Wall clock time and date at job start Mon Mar 30 2020 01:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47120 * 2 1 4 4 C 1.50700 * 109.47140 * 119.99951 * 2 1 3 5 5 H 1.07993 * 120.00145 * 120.00097 * 4 2 1 6 6 C 1.37884 * 120.00044 * 299.99963 * 4 2 1 7 7 N 1.31519 * 119.99741 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00018 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46988 * 59.99946 * 8 6 4 10 10 H 1.48496 * 109.46833 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46794 * 300.00059 * 8 6 4 12 12 C 1.50697 * 109.47019 * 240.00006 * 2 1 3 13 13 O 1.21283 * 119.99895 * 239.99930 * 12 2 1 14 14 N 1.34776 * 120.00214 * 60.00183 * 12 2 1 15 15 C 1.47536 * 125.63600 * 0.03651 * 14 12 2 16 16 C 1.54906 * 104.78210 * 155.84644 * 15 14 12 17 17 C 1.55156 * 101.61451 * 37.00903 * 16 15 14 18 18 C 1.47019 * 125.65091 * 180.02562 * 14 12 2 19 19 H 1.09000 * 109.88178 * 300.50740 * 18 14 12 20 20 C 1.52996 * 110.01102 * 61.59772 * 18 14 12 21 21 O 1.43749 * 109.63529 * 303.70453 * 20 18 14 22 22 C 1.44781 * 104.81575 * 215.80828 * 21 20 18 23 23 C 1.54907 * 101.72281 * 36.10176 * 22 21 20 24 24 O 1.43368 * 109.63340 * 184.33782 * 20 18 14 25 25 H 1.08990 * 109.47356 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46832 * 300.00194 * 1 2 3 27 27 H 1.09000 * 109.47335 * 59.99812 * 1 2 3 28 28 H 0.96998 * 119.99901 * 179.97438 * 7 6 4 29 29 H 1.09008 * 110.40688 * 37.01521 * 15 14 12 30 30 H 1.08997 * 110.36984 * 274.66162 * 15 14 12 31 31 H 1.09002 * 111.00655 * 278.91303 * 16 15 14 32 32 H 1.09002 * 111.00329 * 155.10229 * 16 15 14 33 33 H 1.09001 * 110.72614 * 82.84221 * 17 16 15 34 34 H 1.09002 * 110.71438 * 206.11319 * 17 16 15 35 35 H 1.09009 * 109.62648 * 63.95213 * 20 18 14 36 36 H 1.09000 * 110.97750 * 277.98895 * 22 21 20 37 37 H 1.09006 * 111.01092 * 154.22882 * 22 21 20 38 38 H 1.09007 * 110.69548 * 206.03733 * 23 22 21 39 39 H 1.09000 * 110.84423 * 82.90597 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.8075 -1.1189 4.0077 10 1 1.8269 -0.4198 5.2204 11 1 1.8281 -2.5197 4.0082 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4546 15 6 0.8710 0.9334 -2.7336 16 6 1.2965 1.3926 -4.1505 17 6 1.5403 0.0340 -4.8591 18 6 2.1258 -0.8435 -3.7327 19 1 3.2138 -0.8530 -3.7980 20 6 1.5852 -2.2700 -3.8497 21 8 2.0246 -3.0470 -2.7230 22 6 2.2596 -4.3723 -3.2562 23 6 2.8231 -4.0503 -4.6628 24 8 2.0814 -2.8762 -5.0504 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1615 3.4844 29 1 1.0693 1.7192 -2.0046 30 1 -0.1849 0.6631 -2.7235 31 1 2.2122 1.9827 -4.1114 32 1 0.4960 1.9493 -4.6377 33 1 0.6024 -0.3839 -5.2251 34 1 2.2570 0.1466 -5.6726 35 1 0.4956 -2.2478 -3.8740 36 1 1.3286 -4.9347 -3.3282 37 1 2.9929 -4.9109 -2.6559 38 1 2.6310 -4.8725 -5.3522 39 1 3.8900 -3.8329 -4.6127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888444987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:36 Heat of formation + Delta-G solvation = -114.357353 kcal Electronic energy + Delta-G solvation = -22241.818087 eV Core-core repulsion = 18957.010927 eV Total energy + Delta-G solvation = -3284.807160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.38957 -38.91487 -36.60616 -34.69002 -33.67876 -31.47687 -30.80864 -29.79157 -28.23404 -25.09350 -24.42216 -23.24966 -22.84987 -21.32281 -20.55426 -18.55471 -17.19505 -16.61709 -16.21265 -15.80907 -15.60866 -15.10189 -14.66138 -14.31185 -14.00200 -13.46803 -13.28633 -13.10335 -12.93758 -12.61809 -12.42195 -12.29968 -11.68090 -11.66232 -11.32292 -11.01490 -10.91665 -10.90281 -10.71613 -10.65884 -10.38604 -10.14892 -10.01432 -9.87653 -9.51641 -8.87931 -8.42477 -8.16496 -7.87357 -5.96049 -3.98192 3.35870 3.40147 3.42006 3.48670 3.92202 3.94971 4.24509 4.52426 4.69907 4.73171 4.86919 4.95829 5.05456 5.16408 5.31034 5.37206 5.47372 5.52847 5.60899 5.70354 5.77175 5.83735 5.96542 6.02666 6.11574 6.14561 6.25395 6.40614 6.73382 6.89715 7.00597 7.09301 7.33170 7.59043 7.84535 8.08985 8.26527 8.55940 9.10471 9.45309 9.66965 11.11681 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022009 B = 0.006521 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.911447 B = 4292.696507 C = 5296.084120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.037 3.963 3 H 0.048 0.952 4 C -0.497 4.497 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.528 3.472 13 O -0.506 6.506 14 N -0.625 5.625 15 C 0.105 3.895 16 C -0.136 4.136 17 C -0.117 4.117 18 C 0.126 3.874 19 H 0.074 0.926 20 C 0.220 3.780 21 O -0.320 6.320 22 C 0.009 3.991 23 C 0.024 3.976 24 O -0.389 6.389 25 H 0.028 0.972 26 H 0.090 0.910 27 H 0.019 0.981 28 H 0.260 0.740 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -2.701 -15.853 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.016 3.984 3 H 0.066 0.934 4 C -0.535 4.535 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.320 3.680 13 O -0.378 6.378 14 N -0.365 5.365 15 C -0.018 4.018 16 C -0.174 4.174 17 C -0.155 4.155 18 C 0.021 3.979 19 H 0.092 0.908 20 C 0.124 3.876 21 O -0.238 6.238 22 C -0.068 4.068 23 C -0.053 4.053 24 O -0.309 6.309 25 H 0.047 0.953 26 H 0.109 0.891 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.489 -3.034 -15.498 15.800 hybrid contribution 0.202 -0.591 0.773 0.994 sum -0.286 -3.625 -14.725 15.167 Atomic orbital electron populations 1.21846 0.96785 0.99745 1.01102 1.18793 0.94079 0.96486 0.89046 0.93441 1.21136 1.30695 1.12660 0.89032 0.90892 1.24940 0.95231 0.95107 0.99002 1.69871 1.37311 1.23154 1.23459 0.86528 0.79241 0.79711 0.81763 1.20265 1.21429 1.20291 1.21774 0.79123 0.84354 0.82781 1.90582 1.36727 1.25482 1.85058 1.48900 1.53568 1.29538 1.04448 1.22333 0.94819 0.88607 0.96057 1.22849 1.02114 0.96722 0.95679 1.22523 1.01521 0.94892 0.96577 1.21736 0.99666 0.90892 0.85582 0.90787 1.24575 0.96564 0.91252 0.75251 1.89892 1.87190 1.18763 1.27979 1.24336 1.00745 0.88015 0.93739 1.24147 0.96984 0.87900 0.96257 1.88798 1.71139 1.41038 1.29965 0.95293 0.89109 0.96241 0.93035 0.90022 0.91733 0.90712 0.90116 0.90675 0.90191 0.90670 0.91543 0.87702 0.88812 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.78 37.16 0.33 -2.94 16 2 C 0.04 0.96 1.99 -92.93 -0.18 0.77 16 3 H 0.05 1.28 7.85 -51.93 -0.41 0.87 16 4 C -0.50 -14.50 8.37 -34.44 -0.29 -14.79 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.63 5.30 -17.81 -0.09 1.54 16 7 N -0.90 -25.70 11.32 55.43 0.63 -25.07 16 8 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.53 12.74 6.81 -10.99 -0.07 12.67 16 13 O -0.51 -13.63 12.55 -19.13 -0.24 -13.87 16 14 N -0.62 -11.95 3.07 -162.93 -0.50 -12.45 16 15 C 0.11 1.60 5.14 -2.47 -0.01 1.59 16 16 C -0.14 -1.56 7.08 -24.58 -0.17 -1.74 16 17 C -0.12 -1.43 6.31 -24.90 -0.16 -1.58 16 18 C 0.13 2.09 3.06 -66.96 -0.21 1.89 16 19 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 20 C 0.22 3.68 3.58 37.16 0.13 3.81 16 21 O -0.32 -6.30 7.49 -67.80 -0.51 -6.80 16 22 C 0.01 0.12 7.95 38.16 0.30 0.43 16 23 C 0.02 0.29 8.07 38.16 0.31 0.60 16 24 O -0.39 -5.73 11.04 -59.04 -0.65 -6.38 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 27 H 0.02 0.38 5.00 -51.93 -0.26 0.12 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.08 1.30 7.37 -51.92 -0.38 0.92 16 30 H 0.06 0.94 7.08 -51.93 -0.37 0.57 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.85 7.79 -51.93 -0.40 0.45 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.23 8.06 -51.92 -0.42 0.81 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 306.32 15.07 4.62 4.62 Total: -1.00 -33.22 306.32 -7.65 -40.87 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.85 Total: -0.45 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.12 Total: 2.24 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.13 Total: -37.53 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -1.40 Total: -27.05 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.22 -7.65 -40.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888444987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.489 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds