Wall clock time and date at job start Mon Mar 30 2020 01:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47120 * 2 1 4 4 C 1.50700 * 109.47140 * 119.99951 * 2 1 3 5 5 H 1.07993 * 120.00145 * 120.00097 * 4 2 1 6 6 C 1.37884 * 120.00044 * 299.99963 * 4 2 1 7 7 N 1.31519 * 119.99741 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00018 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46988 * 59.99946 * 8 6 4 10 10 H 1.48496 * 109.46833 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46794 * 300.00059 * 8 6 4 12 12 C 1.50697 * 109.47019 * 240.00006 * 2 1 3 13 13 O 1.21283 * 119.99895 * 239.99930 * 12 2 1 14 14 N 1.34776 * 120.00214 * 60.00183 * 12 2 1 15 15 C 1.47536 * 125.63600 * 0.03651 * 14 12 2 16 16 C 1.54906 * 104.78210 * 155.84644 * 15 14 12 17 17 C 1.55156 * 101.61451 * 37.00903 * 16 15 14 18 18 C 1.47019 * 125.65091 * 180.02562 * 14 12 2 19 19 H 1.09000 * 109.88178 * 300.50740 * 18 14 12 20 20 C 1.52996 * 110.01102 * 61.59772 * 18 14 12 21 21 O 1.43749 * 109.63529 * 303.70453 * 20 18 14 22 22 C 1.44781 * 104.81575 * 215.80828 * 21 20 18 23 23 C 1.54907 * 101.72281 * 36.10176 * 22 21 20 24 24 O 1.43368 * 109.63340 * 184.33782 * 20 18 14 25 25 H 1.08990 * 109.47356 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46832 * 300.00194 * 1 2 3 27 27 H 1.09000 * 109.47335 * 59.99812 * 1 2 3 28 28 H 0.96998 * 119.99901 * 179.97438 * 7 6 4 29 29 H 1.09008 * 110.40688 * 37.01521 * 15 14 12 30 30 H 1.08997 * 110.36984 * 274.66162 * 15 14 12 31 31 H 1.09002 * 111.00655 * 278.91303 * 16 15 14 32 32 H 1.09002 * 111.00329 * 155.10229 * 16 15 14 33 33 H 1.09001 * 110.72614 * 82.84221 * 17 16 15 34 34 H 1.09002 * 110.71438 * 206.11319 * 17 16 15 35 35 H 1.09009 * 109.62648 * 63.95213 * 20 18 14 36 36 H 1.09000 * 110.97750 * 277.98895 * 22 21 20 37 37 H 1.09006 * 111.01092 * 154.22882 * 22 21 20 38 38 H 1.09007 * 110.69548 * 206.03733 * 23 22 21 39 39 H 1.09000 * 110.84423 * 82.90597 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.8075 -1.1189 4.0077 10 1 1.8269 -0.4198 5.2204 11 1 1.8281 -2.5197 4.0082 12 6 2.0323 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2499 -2.4546 15 6 0.8710 0.9334 -2.7336 16 6 1.2965 1.3926 -4.1505 17 6 1.5403 0.0340 -4.8591 18 6 2.1258 -0.8435 -3.7327 19 1 3.2138 -0.8530 -3.7980 20 6 1.5852 -2.2700 -3.8497 21 8 2.0246 -3.0470 -2.7230 22 6 2.2596 -4.3723 -3.2562 23 6 2.8231 -4.0503 -4.6628 24 8 2.0814 -2.8762 -5.0504 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1615 3.4844 29 1 1.0693 1.7192 -2.0046 30 1 -0.1849 0.6631 -2.7235 31 1 2.2122 1.9827 -4.1114 32 1 0.4960 1.9493 -4.6377 33 1 0.6024 -0.3839 -5.2251 34 1 2.2570 0.1466 -5.6726 35 1 0.4956 -2.2478 -3.8740 36 1 1.3286 -4.9347 -3.3282 37 1 2.9929 -4.9109 -2.6559 38 1 2.6310 -4.8725 -5.3522 39 1 3.8900 -3.8329 -4.6127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888444987.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:35 Heat of formation + Delta-G solvation = -136.408808 kcal Electronic energy + Delta-G solvation = -22242.774310 eV Core-core repulsion = 18957.010927 eV Total energy + Delta-G solvation = -3285.763383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66996 -40.40200 -38.15775 -35.94321 -35.74978 -33.20424 -31.98031 -31.51208 -29.41458 -27.20805 -25.81818 -24.69580 -24.08759 -22.78130 -21.83934 -20.08790 -18.51558 -18.19091 -17.87933 -17.44994 -16.94411 -16.71321 -16.21026 -15.84483 -15.40072 -14.98827 -14.59709 -14.47111 -14.32267 -14.16262 -13.92645 -13.54775 -13.32890 -13.10760 -12.89588 -12.67843 -12.63215 -12.48031 -12.17000 -12.10044 -11.96968 -11.90996 -11.66491 -11.14098 -11.02691 -10.77118 -10.54863 -10.10585 -9.39982 -8.14482 -6.24436 1.38715 1.40912 1.49370 1.98885 2.14607 2.43353 2.69048 3.04166 3.14605 3.58380 3.69375 3.75455 3.84889 4.02231 4.10338 4.21938 4.31527 4.36647 4.47948 4.57817 4.62456 4.71066 4.75545 4.86901 4.90130 5.00406 5.01119 5.03951 5.08942 5.13880 5.34416 5.48351 5.59443 5.74263 5.96405 6.14154 6.24482 6.74035 6.87923 7.41759 7.66805 8.91441 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022009 B = 0.006521 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.911447 B = 4292.696507 C = 5296.084120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.035 3.965 3 H 0.032 0.968 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.277 1.277 12 C 0.525 3.475 13 O -0.545 6.545 14 N -0.622 5.622 15 C 0.091 3.909 16 C -0.120 4.120 17 C -0.105 4.105 18 C 0.119 3.881 19 H 0.053 0.947 20 C 0.221 3.779 21 O -0.368 6.368 22 C -0.001 4.001 23 C 0.027 3.973 24 O -0.389 6.389 25 H 0.014 0.986 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.265 0.735 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.133 0.867 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -2.368 -17.727 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.013 3.987 3 H 0.050 0.950 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.203 1.203 12 C 0.316 3.684 13 O -0.421 6.421 14 N -0.360 5.360 15 C -0.031 4.031 16 C -0.157 4.157 17 C -0.143 4.143 18 C 0.014 3.986 19 H 0.071 0.929 20 C 0.125 3.875 21 O -0.288 6.288 22 C -0.078 4.078 23 C -0.049 4.049 24 O -0.310 6.310 25 H 0.033 0.967 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.151 0.849 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.270 -2.668 -17.419 17.668 hybrid contribution 0.454 -0.709 1.309 1.556 sum -0.815 -3.377 -16.110 16.481 Atomic orbital electron populations 1.21637 0.95369 0.98937 1.01859 1.18685 0.95183 0.95313 0.89471 0.95010 1.21269 1.31501 1.12623 0.91200 0.93568 1.25599 0.95241 0.95786 1.01341 1.69948 1.37257 1.23561 1.24302 0.85658 0.78637 0.78697 0.78902 1.20230 1.19669 1.20302 1.21305 0.79125 0.83914 0.84074 1.90552 1.38494 1.27016 1.86080 1.48713 1.52933 1.30329 1.04030 1.22650 0.94926 0.86953 0.98534 1.22836 1.03528 0.96610 0.92768 1.22553 1.02470 0.93989 0.95268 1.22011 0.98873 0.92092 0.85606 0.92852 1.24533 0.96627 0.91091 0.75282 1.89856 1.87582 1.21227 1.30148 1.24597 1.01842 0.86442 0.94870 1.24319 0.96655 0.88091 0.95816 1.88770 1.71429 1.41825 1.28927 0.96673 0.91221 0.92479 0.92601 0.91021 0.90507 0.90402 0.86366 0.89102 0.88135 0.90403 0.89965 0.87548 0.84945 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.78 71.98 0.63 -5.18 16 2 C 0.03 1.85 1.99 -12.29 -0.02 1.83 16 3 H 0.03 1.78 7.85 -2.38 -0.02 1.76 16 4 C -0.53 -31.99 8.37 25.60 0.21 -31.77 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -52.61 11.32 21.45 0.24 -52.37 16 8 Si 0.96 46.35 29.54 68.60 2.03 48.38 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 12 C 0.53 26.18 6.81 87.66 0.60 26.77 16 13 O -0.55 -30.78 12.55 20.56 0.26 -30.52 16 14 N -0.62 -23.76 3.07 -787.79 -2.42 -26.17 16 15 C 0.09 2.62 5.14 86.83 0.45 3.07 16 16 C -0.12 -2.33 7.08 31.98 0.23 -2.10 16 17 C -0.11 -2.21 6.31 31.78 0.20 -2.01 16 18 C 0.12 3.83 3.06 45.34 0.14 3.97 16 19 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 20 C 0.22 7.23 3.58 71.98 0.26 7.49 16 21 O -0.37 -14.81 7.49 -117.84 -0.88 -15.69 16 22 C 0.00 -0.04 7.95 72.63 0.58 0.54 16 23 C 0.03 0.61 8.07 72.63 0.59 1.20 16 24 O -0.39 -10.73 11.04 -126.22 -1.39 -12.12 16 25 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 27 H 0.06 2.25 5.00 -2.39 -0.01 2.24 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.07 2.21 7.37 -2.38 -0.02 2.19 16 30 H 0.08 2.03 7.08 -2.39 -0.02 2.02 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.68 7.79 -2.39 -0.02 1.66 16 34 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 2.47 8.06 -2.38 -0.02 2.45 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 38 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -74.95 306.32 3.17 -71.77 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.04 Total: 11.36 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 4.30 Total: 5.37 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -2.17 Total: -78.54 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -2.02 Total: -58.33 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.95 3.17 -71.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888444987.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.639 kcal (2) G-P(sol) polarization free energy of solvation -74.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds