Wall clock time and date at job start Mon Mar 30 2020 01:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.50701 * 109.47433 * 120.00046 * 2 1 3 13 13 O 1.21277 * 119.99812 * 120.00556 * 12 2 1 14 14 N 1.34776 * 119.99977 * 300.00436 * 12 2 1 15 15 C 1.47432 * 125.64779 * 0.02562 * 14 12 2 16 16 C 1.54911 * 104.83377 * 204.09183 * 15 14 12 17 17 C 1.55162 * 101.57855 * 322.99331 * 16 15 14 18 18 C 1.47021 * 125.65088 * 179.71543 * 14 12 2 19 19 H 1.08997 * 109.87932 * 59.55597 * 18 14 12 20 20 C 1.52997 * 109.88050 * 298.39683 * 18 14 12 21 21 O 1.43755 * 109.63309 * 298.90254 * 20 18 14 22 22 C 1.44575 * 104.92160 * 215.71250 * 21 20 18 23 23 C 1.54918 * 101.64054 * 36.26795 * 22 21 20 24 24 O 1.43368 * 109.63095 * 179.68948 * 20 18 14 25 25 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 26 26 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 27 27 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 1.08998 * 110.36882 * 322.93274 * 15 14 12 30 30 H 1.09003 * 110.36643 * 85.25448 * 15 14 12 31 31 H 1.09004 * 111.00320 * 81.06210 * 16 15 14 32 32 H 1.08989 * 111.00344 * 204.88176 * 16 15 14 33 33 H 1.09001 * 110.71656 * 153.86622 * 17 16 15 34 34 H 1.08999 * 110.71867 * 276.95757 * 17 16 15 35 35 H 1.09000 * 109.63227 * 59.29730 * 20 18 14 36 36 H 1.08997 * 111.08783 * 278.15717 * 22 21 20 37 37 H 1.09007 * 110.98076 * 154.32899 * 22 21 20 38 38 H 1.08999 * 110.69699 * 205.96224 * 23 22 21 39 39 H 1.09003 * 110.84222 * 82.82159 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 6 2.0324 -0.7104 1.2304 13 8 2.7298 -1.6964 1.1191 14 7 1.7068 -0.2500 2.4546 15 6 0.8704 0.9316 2.7337 16 6 1.2941 1.3915 4.1510 17 6 1.5387 0.0328 4.8592 18 6 2.1214 -0.8466 3.7327 19 1 3.2092 -0.8595 3.8001 20 6 1.5734 -2.2707 3.8442 21 8 0.1367 -2.2398 3.8058 22 6 -0.2825 -3.2901 4.7065 23 6 0.7921 -3.1957 5.8185 24 8 1.9868 -2.8498 5.0889 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 0.7087 1.1613 -3.4844 29 1 1.0686 1.7174 2.0048 30 1 -0.1852 0.6603 2.7227 31 1 2.2093 1.9824 4.1127 32 1 0.4926 1.9474 4.6372 33 1 2.2549 0.1456 5.6731 34 1 0.6014 -0.3846 5.2271 35 1 1.9489 -2.8734 3.0173 36 1 -0.2518 -4.2629 4.2159 37 1 -1.2763 -3.0879 5.1062 38 1 0.9118 -4.1555 6.3209 39 1 0.5397 -2.4153 6.5364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888444988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:37 Heat of formation + Delta-G solvation = -142.224833 kcal Electronic energy + Delta-G solvation = -22144.816939 eV Core-core repulsion = 18858.801355 eV Total energy + Delta-G solvation = -3286.015584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88805 -40.54181 -38.19054 -36.04873 -35.85428 -33.24498 -32.12089 -31.50810 -29.47567 -27.23969 -26.00534 -24.76491 -24.08441 -22.95959 -21.87695 -20.10416 -18.44629 -18.22835 -17.88245 -17.63674 -17.21618 -16.75178 -16.38845 -15.98310 -15.33826 -15.09284 -14.60044 -14.49523 -14.34931 -14.25302 -14.00552 -13.75307 -13.37840 -13.19059 -12.93527 -12.71809 -12.57423 -12.53314 -12.38517 -12.21821 -12.02441 -11.93502 -11.66013 -11.16774 -11.05832 -10.78977 -10.59776 -10.31904 -9.53033 -8.16413 -6.27178 1.38915 1.41082 1.49551 1.82018 2.00419 2.42466 2.61154 2.91274 3.12550 3.53644 3.62830 3.68832 3.87550 4.04339 4.15193 4.21678 4.26523 4.35767 4.37354 4.57509 4.64723 4.71310 4.77694 4.85229 4.89581 4.91386 4.96848 4.99931 5.06307 5.10846 5.34012 5.44488 5.52748 5.71281 5.91561 6.03696 6.19956 6.63361 6.81142 7.36907 7.45720 8.89468 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027035 B = 0.005626 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.437589 B = 4976.046281 C = 5409.599201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.035 3.965 3 H 0.039 0.961 4 C -0.533 4.533 5 H 0.045 0.955 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.533 3.467 13 O -0.589 6.589 14 N -0.613 5.613 15 C 0.096 3.904 16 C -0.119 4.119 17 C -0.106 4.106 18 C 0.117 3.883 19 H 0.071 0.929 20 C 0.234 3.766 21 O -0.383 6.383 22 C 0.005 3.995 23 C 0.018 3.982 24 O -0.396 6.396 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.013 0.987 28 H 0.266 0.734 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.106 -0.503 19.861 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.014 3.986 3 H 0.056 0.944 4 C -0.571 4.571 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.325 3.675 13 O -0.469 6.469 14 N -0.348 5.348 15 C -0.026 4.026 16 C -0.156 4.156 17 C -0.143 4.143 18 C 0.013 3.987 19 H 0.089 0.911 20 C 0.138 3.862 21 O -0.304 6.304 22 C -0.070 4.070 23 C -0.057 4.057 24 O -0.317 6.317 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.724 -0.815 19.527 20.106 hybrid contribution 0.473 -0.875 -1.331 1.662 sum -4.251 -1.690 18.195 18.762 Atomic orbital electron populations 1.21628 0.95078 0.98990 1.01962 1.18702 0.95311 0.95578 0.89041 0.94367 1.21245 1.31840 1.12821 0.91210 0.93626 1.25597 0.95116 0.95762 1.01344 1.69942 1.36967 1.23464 1.24435 0.85635 0.78676 0.78664 0.78795 1.19524 1.20159 1.20331 1.21453 0.77992 0.83591 0.84454 1.90485 1.40593 1.28935 1.86930 1.48610 1.52146 1.30172 1.03869 1.22608 0.94830 0.86503 0.98644 1.22817 1.03536 0.96608 0.92681 1.22550 1.02299 0.94090 0.95389 1.22035 0.98936 0.92083 0.85660 0.91128 1.24054 0.80658 0.94745 0.86777 1.89236 1.19110 1.55418 1.66633 1.24669 1.01590 0.91591 0.89179 1.24519 0.82488 1.03890 0.94838 1.88861 1.31325 1.81226 1.30275 0.92516 0.90941 0.96762 0.92478 0.90784 0.90779 0.90089 0.86540 0.88102 0.89457 0.93449 0.91216 0.84174 0.85957 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.78 71.98 0.63 -5.17 16 2 C 0.03 1.86 1.99 -12.29 -0.02 1.84 16 3 H 0.04 2.12 7.85 -2.38 -0.02 2.10 16 4 C -0.53 -32.38 8.37 25.60 0.21 -32.16 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -52.24 11.32 21.45 0.24 -51.99 16 8 Si 0.96 46.26 29.54 68.60 2.03 48.29 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 12 C 0.53 26.92 7.00 87.66 0.61 27.54 16 13 O -0.59 -34.00 14.48 -3.02 -0.04 -34.04 16 14 N -0.61 -23.81 2.96 -788.04 -2.34 -26.14 16 15 C 0.10 2.85 5.13 86.85 0.45 3.30 16 16 C -0.12 -2.38 7.09 31.99 0.23 -2.15 16 17 C -0.11 -2.29 6.13 31.79 0.19 -2.09 16 18 C 0.12 3.86 2.97 45.34 0.13 3.99 16 19 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 20 C 0.23 8.00 3.59 71.98 0.26 8.26 16 21 O -0.38 -11.94 10.25 -126.20 -1.29 -13.23 16 22 C 0.01 0.11 7.95 72.64 0.58 0.69 16 23 C 0.02 0.31 7.98 72.64 0.58 0.89 16 24 O -0.40 -11.17 10.94 -126.20 -1.38 -12.55 16 25 H 0.06 2.29 4.99 -2.39 -0.01 2.28 16 26 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 29 H 0.07 2.30 7.36 -2.39 -0.02 2.29 16 30 H 0.07 2.14 7.07 -2.39 -0.02 2.12 16 31 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 32 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.09 1.74 7.03 -2.39 -0.02 1.73 16 35 H 0.05 2.10 6.84 -2.39 -0.02 2.08 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.14 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -75.54 308.66 2.56 -72.98 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.04 Total: 10.09 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 4.30 Total: 6.60 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -2.09 Total: -78.14 kcal Atomic # 8 Polarization: -57.11 SS G_CDS: -2.72 Total: -59.83 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -75.54 2.56 -72.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888444988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.248 kcal (2) G-P(sol) polarization free energy of solvation -75.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds