Wall clock time and date at job start Mon Mar 30 2020 01:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46453 * 2 1 4 4 C 1.52994 * 109.47400 * 239.99545 * 2 1 3 5 5 C 1.50699 * 109.47018 * 64.99990 * 4 2 1 6 6 H 1.08001 * 120.00410 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99724 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00100 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99793 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47235 * 60.00211 * 9 7 5 11 11 H 1.48501 * 109.47257 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47620 * 300.00038 * 9 7 5 13 13 C 1.53003 * 109.46953 * 119.99326 * 2 1 3 14 14 N 1.46507 * 109.47165 * 295.00519 * 13 2 1 15 15 C 1.39672 * 119.99644 * 179.97438 * 14 13 2 16 16 C 1.38918 * 120.07035 * 179.97438 * 15 14 13 17 17 C 1.38103 * 119.92232 * 180.26003 * 16 15 14 18 18 C 1.38291 * 120.07426 * 359.43747 * 17 16 15 19 19 C 1.50698 * 119.92195 * 180.27995 * 18 17 16 20 20 F 1.39903 * 109.46610 * 120.28236 * 19 18 17 21 21 F 1.39901 * 109.47299 * 240.27534 * 19 18 17 22 22 C 1.38281 * 120.14889 * 0.56232 * 18 17 16 23 23 C 1.38103 * 120.07737 * 359.72142 * 22 18 17 24 24 H 1.09010 * 109.46784 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47463 * 300.00154 * 1 2 3 26 26 H 1.09003 * 109.47348 * 60.01077 * 1 2 3 27 27 H 1.08997 * 109.47273 * 185.00167 * 4 2 1 28 28 H 1.09002 * 109.46909 * 305.00056 * 4 2 1 29 29 H 0.97003 * 120.00153 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46926 * 175.00213 * 13 2 1 31 31 H 1.08999 * 109.47098 * 54.99969 * 13 2 1 32 32 H 0.97003 * 119.99787 * 359.97438 * 14 13 2 33 33 H 1.08002 * 120.03585 * 359.97438 * 16 15 14 34 34 H 1.08004 * 119.95970 * 179.72372 * 17 16 15 35 35 H 1.08994 * 109.47297 * 0.28552 * 19 18 17 36 36 H 1.07998 * 119.96595 * 179.74375 * 22 18 17 37 37 H 1.08001 * 120.04036 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3758 7 6 1.9925 -0.4025 -3.7282 8 7 2.6757 -1.5195 -3.8509 9 14 1.4978 0.5617 -5.2497 10 1 2.0899 1.9222 -5.1878 11 1 1.9929 -0.1383 -6.4621 12 1 0.0178 0.6682 -5.3088 13 6 2.0400 -0.7211 1.2494 14 7 1.6523 0.0356 2.4425 15 6 2.0079 -0.4296 3.7105 16 6 1.6415 0.2869 4.8428 17 6 1.9993 -0.1730 6.0949 18 6 2.7114 -1.3516 6.2228 19 6 3.0946 -1.8536 7.5910 20 9 2.5346 -3.1190 7.7971 21 9 4.4880 -1.9398 7.6828 22 6 3.0777 -2.0673 5.0977 23 6 2.7282 -1.6100 3.8423 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 3.1264 -0.7995 -1.2054 28 1 1.6054 -1.7199 -1.2949 29 1 2.9230 -1.8425 -4.7315 30 1 3.1263 -0.7993 1.2057 31 1 1.6054 -1.7197 1.2954 32 1 1.1487 0.8597 2.3517 33 1 1.0815 1.2051 4.7438 34 1 1.7187 0.3859 6.9754 35 1 2.7225 -1.1639 8.3485 36 1 3.6374 -2.9852 5.2008 37 1 3.0149 -2.1693 2.9640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897108341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:06 Heat of formation + Delta-G solvation = -99.811750 kcal Electronic energy + Delta-G solvation = -19475.535820 eV Core-core repulsion = 16080.271889 eV Total energy + Delta-G solvation = -3395.263931 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.00838 -47.00116 -39.53200 -36.84777 -34.24764 -32.25965 -31.04491 -30.13712 -27.08627 -26.33850 -24.89881 -23.33285 -22.31535 -21.09640 -19.41228 -17.64006 -17.38910 -17.23409 -16.83597 -16.52126 -15.38232 -14.70451 -14.61101 -14.45141 -13.96292 -13.78465 -13.60589 -13.39409 -13.38208 -13.21537 -12.72629 -12.48184 -12.24139 -12.02747 -11.61151 -11.11752 -11.00672 -10.95459 -10.91442 -10.48544 -10.43151 -10.17981 -9.81317 -9.37937 -9.12754 -9.02282 -8.42062 -7.42587 -6.06568 -4.08961 1.35458 1.37946 3.28440 3.33719 3.35095 3.53924 3.71599 3.74266 4.14502 4.40356 4.52032 4.87235 4.91307 5.02718 5.29215 5.31517 5.40295 5.51338 5.57316 5.68035 5.81452 5.93675 6.08073 6.17819 6.25803 6.30392 6.34194 6.42663 6.69598 6.80332 6.91818 6.96552 7.38684 7.55362 7.68500 7.80179 7.91306 8.33276 8.96379 9.55106 11.04770 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.045650 B = 0.002903 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.209631 B = 9643.322264 C = 9972.722569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.063 0.937 4 C 0.031 3.969 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.121 3.879 14 N -0.733 5.733 15 C 0.246 3.754 16 C -0.209 4.209 17 C -0.037 4.037 18 C -0.247 4.247 19 C 0.320 3.680 20 F -0.206 7.206 21 F -0.206 7.206 22 C -0.028 4.028 23 C -0.203 4.203 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.262 0.738 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.400 0.600 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 1.964 20.655 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.002 4.002 14 N -0.359 5.359 15 C 0.138 3.862 16 C -0.232 4.232 17 C -0.056 4.056 18 C -0.251 4.251 19 C 0.266 3.734 20 F -0.187 7.187 21 F -0.187 7.187 22 C -0.047 4.047 23 C -0.225 4.225 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.235 0.765 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.338 1.689 20.310 20.424 hybrid contribution -0.340 0.655 -1.012 1.253 sum -1.678 2.344 19.298 19.512 Atomic orbital electron populations 1.21731 0.95844 1.01177 1.00225 1.21453 0.95695 0.99835 0.94530 0.91904 1.19072 0.96286 0.95552 0.89780 1.21140 1.35237 1.08427 0.90911 0.92601 1.25010 0.95177 0.95061 0.99145 1.69941 1.38626 1.21078 1.23714 0.86669 0.78890 0.80097 0.82412 1.20266 1.21271 1.20254 1.21732 0.99343 0.95302 0.83806 1.45174 1.60101 1.27811 1.02775 1.18066 0.90524 0.91914 0.85699 1.20520 1.08770 1.02700 0.91187 1.20535 0.94326 0.93603 0.97106 1.19900 1.10780 1.00532 0.93847 1.20257 0.74620 0.81905 0.96582 1.92994 1.84950 1.44640 1.96132 1.92995 1.31720 1.96635 1.97362 1.20655 0.95000 0.97747 0.91332 1.20705 1.05870 0.98024 0.97948 0.93406 0.95135 0.91664 0.96418 0.96276 0.92868 0.92207 0.92274 0.76491 0.85810 0.85859 0.87220 0.85953 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.88 37.16 0.33 -1.95 16 2 C -0.10 -1.78 2.37 -90.62 -0.22 -2.00 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.03 0.74 4.45 -27.89 -0.12 0.61 16 5 C -0.52 -13.92 8.41 -34.44 -0.29 -14.21 16 6 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.12 1.92 4.30 -4.04 -0.02 1.90 16 14 N -0.73 -9.86 5.46 -58.62 -0.32 -10.18 16 15 C 0.25 3.22 6.65 -83.78 -0.56 2.66 16 16 C -0.21 -2.33 9.90 -39.38 -0.39 -2.72 16 17 C -0.04 -0.37 9.66 -39.61 -0.38 -0.75 16 18 C -0.25 -2.78 5.37 -104.59 -0.56 -3.34 16 19 C 0.32 3.14 5.45 36.00 0.20 3.34 16 20 F -0.21 -2.38 17.26 2.25 0.04 -2.34 16 21 F -0.21 -2.38 17.26 2.25 0.04 -2.35 16 22 C -0.03 -0.35 9.59 -39.61 -0.38 -0.73 16 23 C -0.20 -2.70 9.31 -39.38 -0.37 -3.07 16 24 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.03 0.43 7.18 -51.93 -0.37 0.06 16 26 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 31 H 0.06 0.95 7.95 -51.93 -0.41 0.53 16 32 H 0.40 4.86 7.67 -40.82 -0.31 4.55 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.12 0.84 7.94 -52.48 -0.42 0.43 16 35 H 0.11 0.68 7.87 -51.93 -0.41 0.27 16 36 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.13 1.71 6.73 -52.49 -0.35 1.36 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -29.37 318.20 -7.68 -37.05 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.09 Total: 1.14 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.86 Total: -18.76 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.42 Total: -35.63 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.08 Total: -4.69 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.37 -7.68 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897108341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.764 kcal (2) G-P(sol) polarization free energy of solvation -29.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds