Wall clock time and date at job start Mon Mar 30 2020 01:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46453 * 2 1 4 4 C 1.52994 * 109.47400 * 239.99545 * 2 1 3 5 5 C 1.50699 * 109.47018 * 64.99990 * 4 2 1 6 6 H 1.08001 * 120.00410 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99724 * 180.02562 * 5 4 2 8 8 N 1.31506 * 120.00100 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99793 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47235 * 60.00211 * 9 7 5 11 11 H 1.48501 * 109.47257 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47620 * 300.00038 * 9 7 5 13 13 C 1.53003 * 109.46953 * 119.99326 * 2 1 3 14 14 N 1.46507 * 109.47165 * 295.00519 * 13 2 1 15 15 C 1.39672 * 119.99644 * 179.97438 * 14 13 2 16 16 C 1.38918 * 120.07035 * 179.97438 * 15 14 13 17 17 C 1.38103 * 119.92232 * 180.26003 * 16 15 14 18 18 C 1.38291 * 120.07426 * 359.43747 * 17 16 15 19 19 C 1.50698 * 119.92195 * 180.27995 * 18 17 16 20 20 F 1.39903 * 109.46610 * 120.28236 * 19 18 17 21 21 F 1.39901 * 109.47299 * 240.27534 * 19 18 17 22 22 C 1.38281 * 120.14889 * 0.56232 * 18 17 16 23 23 C 1.38103 * 120.07737 * 359.72142 * 22 18 17 24 24 H 1.09010 * 109.46784 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47463 * 300.00154 * 1 2 3 26 26 H 1.09003 * 109.47348 * 60.01077 * 1 2 3 27 27 H 1.08997 * 109.47273 * 185.00167 * 4 2 1 28 28 H 1.09002 * 109.46909 * 305.00056 * 4 2 1 29 29 H 0.97003 * 120.00153 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46926 * 175.00213 * 13 2 1 31 31 H 1.08999 * 109.47098 * 54.99969 * 13 2 1 32 32 H 0.97003 * 119.99787 * 359.97438 * 14 13 2 33 33 H 1.08002 * 120.03585 * 359.97438 * 16 15 14 34 34 H 1.08004 * 119.95970 * 179.72372 * 17 16 15 35 35 H 1.08994 * 109.47297 * 0.28552 * 19 18 17 36 36 H 1.07998 * 119.96595 * 179.74375 * 22 18 17 37 37 H 1.08001 * 120.04036 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3758 7 6 1.9925 -0.4025 -3.7282 8 7 2.6757 -1.5195 -3.8509 9 14 1.4978 0.5617 -5.2497 10 1 2.0899 1.9222 -5.1878 11 1 1.9929 -0.1383 -6.4621 12 1 0.0178 0.6682 -5.3088 13 6 2.0400 -0.7211 1.2494 14 7 1.6523 0.0356 2.4425 15 6 2.0079 -0.4296 3.7105 16 6 1.6415 0.2869 4.8428 17 6 1.9993 -0.1730 6.0949 18 6 2.7114 -1.3516 6.2228 19 6 3.0946 -1.8536 7.5910 20 9 2.5346 -3.1190 7.7971 21 9 4.4880 -1.9398 7.6828 22 6 3.0777 -2.0673 5.0977 23 6 2.7282 -1.6100 3.8423 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8901 27 1 3.1264 -0.7995 -1.2054 28 1 1.6054 -1.7199 -1.2949 29 1 2.9230 -1.8425 -4.7315 30 1 3.1263 -0.7993 1.2057 31 1 1.6054 -1.7197 1.2954 32 1 1.1487 0.8597 2.3517 33 1 1.0815 1.2051 4.7438 34 1 1.7187 0.3859 6.9754 35 1 2.7225 -1.1639 8.3485 36 1 3.6374 -2.9852 5.2008 37 1 3.0149 -2.1693 2.9640 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897108341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:06 Heat of formation + Delta-G solvation = -115.322504 kcal Electronic energy + Delta-G solvation = -19476.208416 eV Core-core repulsion = 16080.271889 eV Total energy + Delta-G solvation = -3395.936527 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.82577 -47.83589 -40.48381 -38.17263 -35.71470 -34.07809 -31.93870 -31.23923 -28.89087 -27.56700 -25.98539 -24.86206 -23.46269 -22.05833 -20.91927 -18.61861 -18.53795 -18.13369 -18.05387 -17.80679 -16.66558 -16.39947 -16.04540 -15.42614 -14.90239 -14.82267 -14.72497 -14.43914 -14.26820 -14.23663 -14.22021 -14.03898 -13.41373 -13.38150 -13.09136 -12.78388 -12.69059 -12.28753 -12.11418 -11.92093 -11.76125 -11.70958 -11.19122 -11.06700 -11.02763 -10.54758 -9.91263 -8.43847 -8.19131 -6.28560 0.43721 0.48733 1.40484 1.42437 1.50155 2.38371 2.49394 2.80274 2.99597 3.15019 3.44234 3.74147 3.98016 4.05889 4.11965 4.14809 4.24703 4.35590 4.46326 4.61461 4.70391 4.74014 4.84839 4.89928 5.05513 5.17950 5.26580 5.32931 5.37248 5.44153 5.50016 5.53746 5.74217 5.84410 5.84668 6.22839 6.33853 6.82682 6.87798 7.40112 8.92732 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.045650 B = 0.002903 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.209631 B = 9643.322264 C = 9972.722569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.034 3.966 5 C -0.531 4.531 6 H 0.064 0.936 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.139 3.861 14 N -0.731 5.731 15 C 0.228 3.772 16 C -0.206 4.206 17 C -0.029 4.029 18 C -0.251 4.251 19 C 0.316 3.684 20 F -0.218 7.218 21 F -0.219 7.219 22 C -0.045 4.045 23 C -0.223 4.223 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.048 0.952 27 H -0.010 1.010 28 H -0.007 1.007 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.408 0.592 33 H 0.148 0.852 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.121 0.879 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 4.042 22.515 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.104 4.104 3 H 0.084 0.916 4 C -0.004 4.004 5 C -0.569 4.569 6 H 0.082 0.918 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.014 3.986 14 N -0.359 5.359 15 C 0.121 3.879 16 C -0.228 4.228 17 C -0.048 4.048 18 C -0.254 4.254 19 C 0.263 3.737 20 F -0.200 7.200 21 F -0.200 7.200 22 C -0.064 4.064 23 C -0.246 4.246 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.008 0.992 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.245 0.755 33 H 0.166 0.834 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.139 0.861 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.646 3.779 22.205 22.679 hybrid contribution 0.098 -0.027 -1.492 1.496 sum -2.548 3.753 20.713 21.203 Atomic orbital electron populations 1.21643 0.94378 1.01033 1.01186 1.21206 0.96774 0.99247 0.93134 0.91642 1.18957 0.94447 0.94761 0.92229 1.21598 1.34685 1.08718 0.91919 0.91763 1.25939 0.95236 0.96044 1.02679 1.70086 1.40133 1.22908 1.24413 0.85573 0.78952 0.78772 0.78202 1.19243 1.21249 1.19155 1.21291 0.98442 0.94929 0.83927 1.44859 1.60917 1.28012 1.02109 1.18248 0.91304 0.92286 0.86028 1.20857 1.08153 1.03092 0.90744 1.20989 0.92681 0.92942 0.98192 1.20230 1.10252 1.00808 0.94145 1.20723 0.73928 0.82035 0.97028 1.92970 1.85072 1.45777 1.96148 1.92970 1.32945 1.96685 1.97392 1.20791 0.95611 0.98270 0.91769 1.20737 1.07026 0.98766 0.98039 0.94115 0.91508 0.93247 0.99195 0.98865 0.92915 0.93401 0.92957 0.75506 0.83404 0.81659 0.82479 0.86127 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.88 71.98 0.64 -3.56 16 2 C -0.08 -3.16 2.37 -10.79 -0.03 -3.19 16 3 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -28.91 8.41 25.60 0.22 -28.70 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 8 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 9 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 C 0.14 4.46 4.30 86.38 0.37 4.83 16 14 N -0.73 -18.87 5.46 -339.39 -1.85 -20.72 16 15 C 0.23 5.68 6.65 38.22 0.25 5.94 16 16 C -0.21 -3.95 9.90 22.40 0.22 -3.73 16 17 C -0.03 -0.48 9.66 22.25 0.21 -0.26 16 18 C -0.25 -5.08 5.37 -19.84 -0.11 -5.19 16 19 C 0.32 5.35 5.45 71.24 0.39 5.73 16 20 F -0.22 -4.67 17.26 44.97 0.78 -3.89 16 21 F -0.22 -4.70 17.26 44.97 0.78 -3.92 16 22 C -0.05 -1.12 9.59 22.25 0.21 -0.91 16 23 C -0.22 -6.02 9.31 22.40 0.21 -5.81 16 24 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.07 1.75 7.18 -2.39 -0.02 1.73 16 26 H 0.05 1.80 6.95 -2.39 -0.02 1.79 16 27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.05 1.63 7.95 -2.39 -0.02 1.62 16 31 H 0.05 1.74 7.95 -2.39 -0.02 1.72 16 32 H 0.41 9.00 7.67 -92.71 -0.71 8.29 16 33 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.17 1.29 7.94 -2.91 -0.02 1.26 16 35 H 0.16 1.21 7.87 -2.39 -0.02 1.19 16 36 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.12 3.30 6.73 -2.91 -0.02 3.28 16 Total: -1.00 -65.09 318.20 5.56 -59.53 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.36 Total: 12.16 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 3.19 Total: -32.63 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -1.57 Total: -76.70 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 1.55 Total: -7.81 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -65.09 5.56 -59.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897108341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.796 kcal (2) G-P(sol) polarization free energy of solvation -65.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds