Wall clock time and date at job start Mon Mar 30 2020 01:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 110.56393 * 2 1 4 4 C 1.54470 * 110.51351 * 237.31557 * 2 1 3 5 5 O 1.44425 * 104.80378 * 265.33564 * 4 2 1 6 6 C 1.44420 * 105.27495 * 319.49003 * 5 4 2 7 7 H 1.09000 * 110.46136 * 281.63139 * 6 5 4 8 8 C 1.50706 * 110.37276 * 159.34501 * 6 5 4 9 9 O 1.21274 * 119.99839 * 359.61742 * 8 6 5 10 10 N 1.34777 * 119.99774 * 179.61614 * 8 6 5 11 11 C 1.47426 * 125.65023 * 0.02562 * 10 8 6 12 12 C 1.54906 * 104.82801 * 155.83532 * 11 10 8 13 13 C 1.55152 * 101.58547 * 37.00910 * 12 11 10 14 14 O 1.42905 * 110.71793 * 83.03711 * 13 12 11 15 15 C 1.50697 * 110.72157 * 206.13235 * 13 12 11 16 16 H 1.07997 * 119.99945 * 24.85520 * 15 13 12 17 17 C 1.37881 * 120.00071 * 204.85763 * 15 13 12 18 18 N 1.31510 * 120.00181 * 173.71742 * 17 15 13 19 19 Si 1.86802 * 119.99724 * 353.71540 * 17 15 13 20 20 H 1.48506 * 109.47139 * 87.22712 * 19 17 15 21 21 H 1.48497 * 109.47003 * 207.22123 * 19 17 15 22 22 H 1.48493 * 109.47330 * 327.22604 * 19 17 15 23 23 C 1.47023 * 125.64449 * 179.97438 * 10 8 6 24 24 C 1.54474 * 104.80506 * 40.51166 * 6 5 4 25 25 H 1.08998 * 109.47219 * 297.32383 * 1 2 3 26 26 H 1.09005 * 109.46701 * 57.32787 * 1 2 3 27 27 H 1.08997 * 109.46840 * 177.32264 * 1 2 3 28 28 H 1.09003 * 110.37365 * 24.16659 * 4 2 1 29 29 H 1.09004 * 110.37534 * 146.50261 * 4 2 1 30 30 H 1.09000 * 110.36235 * 37.00117 * 11 10 8 31 31 H 1.08996 * 110.36767 * 274.67659 * 11 10 8 32 32 H 1.09005 * 111.00655 * 278.93354 * 12 11 10 33 33 H 1.09003 * 111.00234 * 155.08671 * 12 11 10 34 34 H 0.96701 * 114.00317 * 58.51295 * 14 13 12 35 35 H 0.96995 * 120.00198 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.88147 * 61.67769 * 23 10 8 37 37 H 1.09002 * 109.88218 * 300.51345 * 23 10 8 38 38 H 1.08999 * 110.51082 * 94.66765 * 24 6 5 39 39 H 1.08998 * 110.51062 * 217.24258 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9130 1.0206 0.0000 4 6 2.0714 -0.7813 -1.2177 5 8 2.3071 -2.1177 -0.7235 6 6 2.8757 -1.9421 0.5923 7 1 3.9304 -1.6770 0.5194 8 6 2.7066 -3.1976 1.4087 9 8 2.1476 -4.1615 0.9300 10 7 3.1768 -3.2491 2.6708 11 6 3.8725 -2.1558 3.3738 12 6 3.6460 -2.4449 4.8787 13 6 3.7271 -3.9939 4.9141 14 8 5.0873 -4.4276 4.9766 15 6 2.9407 -4.5426 6.0766 16 1 2.1237 -3.9722 6.4931 17 6 3.2642 -5.7729 6.6085 18 7 2.6618 -6.1974 7.6977 19 14 4.5582 -6.8367 5.7818 20 1 5.9022 -6.4719 6.2976 21 1 4.2860 -8.2663 6.0771 22 1 4.5151 -6.6175 4.3138 23 6 3.0799 -4.4045 3.5747 24 6 2.0713 -0.7813 1.2182 25 1 -0.3633 0.4717 0.9130 26 1 -0.3633 0.5548 -0.8651 27 1 -0.3633 -1.0265 -0.0480 28 1 1.3312 -0.7975 -2.0177 29 1 3.0025 -0.3373 -1.5701 30 1 3.4379 -1.1936 3.1028 31 1 4.9370 -2.1716 3.1405 32 1 2.6639 -2.0977 5.1999 33 1 4.4341 -1.9984 5.4852 34 1 5.5725 -4.0919 5.7427 35 1 2.8896 -7.0627 8.0720 36 1 3.6148 -5.2538 3.1495 37 1 2.0332 -4.6645 3.7331 38 1 1.2490 -1.1675 1.8204 39 1 2.7214 -0.1484 1.8223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898086226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:50 Heat of formation + Delta-G solvation = -125.265716 kcal Electronic energy + Delta-G solvation = -21747.639975 eV Core-core repulsion = 18462.359793 eV Total energy + Delta-G solvation = -3285.280182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.39952 -38.91734 -37.36514 -34.86946 -33.55453 -32.40330 -31.05810 -29.77101 -28.36212 -26.60902 -25.32680 -23.69610 -22.36869 -20.66130 -19.88989 -19.08498 -17.48900 -17.27545 -16.54681 -15.85016 -15.47181 -15.16458 -14.99735 -14.60743 -14.29620 -13.87746 -13.73159 -13.24935 -12.85256 -12.68912 -12.53803 -12.32603 -12.01786 -11.95696 -11.67264 -11.66541 -11.33749 -11.06523 -11.05264 -10.79979 -10.63867 -10.31771 -10.22715 -9.96451 -9.38707 -9.24927 -8.67060 -8.54975 -8.13712 -6.22833 -4.35776 2.89167 3.05652 3.43806 3.54039 3.70484 3.97477 4.27938 4.47341 4.52362 4.62099 4.80695 4.90656 5.00227 5.05258 5.12325 5.16310 5.26239 5.36693 5.44545 5.51484 5.53907 5.64803 5.69642 5.77995 5.84281 5.94532 6.04887 6.07591 6.46061 6.54732 6.56558 6.62163 6.78401 6.97389 7.43034 7.92348 8.08686 8.51295 8.58333 8.77921 9.38308 10.85850 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034644 B = 0.005035 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.035128 B = 5560.241300 C = 5723.225313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 H 0.086 0.914 4 C 0.044 3.956 5 O -0.344 6.344 6 C 0.063 3.937 7 H 0.091 0.909 8 C 0.526 3.474 9 O -0.529 6.529 10 N -0.610 5.610 11 C 0.092 3.908 12 C -0.147 4.147 13 C 0.220 3.780 14 O -0.561 6.561 15 C -0.554 4.554 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.885 5.885 19 Si 0.946 3.054 20 H -0.291 1.291 21 H -0.324 1.324 22 H -0.269 1.269 23 C 0.116 3.884 24 C -0.142 4.142 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.373 0.627 35 H 0.268 0.732 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.795 15.366 -11.758 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 H 0.104 0.896 4 C -0.033 4.033 5 O -0.261 6.261 6 C 0.002 3.998 7 H 0.108 0.892 8 C 0.313 3.687 9 O -0.405 6.405 10 N -0.345 5.345 11 C -0.030 4.030 12 C -0.186 4.186 13 C 0.179 3.821 14 O -0.369 6.369 15 C -0.591 4.591 16 H 0.100 0.900 17 C -0.131 4.131 18 N -0.520 5.520 19 Si 0.781 3.219 20 H -0.219 1.219 21 H -0.255 1.255 22 H -0.195 1.195 23 C -0.005 4.005 24 C -0.180 4.180 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.221 0.779 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.199 14.205 -12.623 19.041 hybrid contribution 0.880 -0.041 0.343 0.945 sum 2.079 14.164 -12.280 18.861 Atomic orbital electron populations 1.21844 0.93806 1.02692 1.01847 1.22533 0.97367 0.99820 0.94624 0.89567 1.23575 1.00103 0.83002 0.96606 1.89280 1.82927 1.25334 1.28586 1.22801 0.98598 0.93753 0.84675 0.89152 1.19739 0.79325 0.88805 0.80833 1.90706 1.42340 1.37380 1.70068 1.48609 1.56786 1.16913 1.12211 1.22522 0.96675 0.89858 0.93989 1.23393 1.02687 0.99583 0.92889 1.20071 0.79983 0.89260 0.92748 1.86154 1.25824 1.74190 1.50769 1.21178 1.18735 1.05060 1.14172 0.89995 1.25154 0.96390 0.97534 0.93975 1.69951 1.41994 1.20352 1.19687 0.85736 0.79919 0.75727 0.80499 1.21883 1.25500 1.19527 1.22691 1.01691 0.87478 0.88637 1.23087 1.00684 0.95976 0.98271 0.92234 0.92427 0.91856 0.88683 0.92118 0.91298 0.91600 0.90199 0.90441 0.77927 0.92311 0.91597 0.89902 0.89709 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.94 37.16 0.33 -0.96 16 2 C -0.12 -1.13 3.72 -89.05 -0.33 -1.46 16 3 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 4 C 0.04 0.45 7.18 37.93 0.27 0.72 16 5 O -0.34 -5.30 10.91 -54.45 -0.59 -5.89 16 6 C 0.06 0.90 3.13 -27.11 -0.08 0.81 16 7 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 8 C 0.53 10.02 7.14 -10.98 -0.08 9.95 16 9 O -0.53 -12.45 16.88 -13.66 -0.23 -12.68 16 10 N -0.61 -11.37 3.33 -170.52 -0.57 -11.94 16 11 C 0.09 1.36 6.62 -2.53 -0.02 1.34 16 12 C -0.15 -2.47 6.22 -24.59 -0.15 -2.62 16 13 C 0.22 4.71 0.68 -89.94 -0.06 4.65 16 14 O -0.56 -11.71 8.52 -35.23 -0.30 -12.01 16 15 C -0.55 -14.41 8.72 -34.44 -0.30 -14.71 16 16 H 0.08 2.30 7.99 -52.49 -0.42 1.89 16 17 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 18 N -0.89 -26.02 13.96 55.43 0.77 -25.24 16 19 Si 0.95 23.50 24.87 -169.99 -4.23 19.28 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.32 -8.31 7.11 56.52 0.40 -7.90 16 22 H -0.27 -6.81 5.42 56.52 0.31 -6.51 16 23 C 0.12 2.59 5.83 -3.07 -0.02 2.57 16 24 C -0.14 -1.57 5.08 -25.16 -0.13 -1.69 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.85 7.87 -51.93 -0.41 0.44 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.79 5.17 -51.93 -0.27 0.53 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.37 7.99 -51.93 -0.41 0.95 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.37 6.60 8.94 45.56 0.41 7.01 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.60 6.69 -51.93 -0.35 1.25 16 37 H 0.08 1.97 7.81 -51.93 -0.41 1.56 16 38 H 0.08 1.07 7.46 -51.93 -0.39 0.68 16 39 H 0.09 0.76 6.66 -51.93 -0.35 0.41 16 LS Contribution 306.84 15.07 4.62 4.62 Total: -1.00 -33.59 306.84 -6.39 -39.98 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.20 Total: 3.32 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.66 Total: 0.56 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.21 Total: -37.18 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -1.12 Total: -30.59 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -4.23 Total: 19.28 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.59 -6.39 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898086226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.285 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds