Wall clock time and date at job start Mon Mar 30 2020 01:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 110.56393 * 2 1 4 4 C 1.54470 * 110.51351 * 237.31557 * 2 1 3 5 5 O 1.44425 * 104.80378 * 265.33564 * 4 2 1 6 6 C 1.44420 * 105.27495 * 319.49003 * 5 4 2 7 7 H 1.09000 * 110.46136 * 281.63139 * 6 5 4 8 8 C 1.50706 * 110.37276 * 159.34501 * 6 5 4 9 9 O 1.21274 * 119.99839 * 359.61742 * 8 6 5 10 10 N 1.34777 * 119.99774 * 179.61614 * 8 6 5 11 11 C 1.47426 * 125.65023 * 0.02562 * 10 8 6 12 12 C 1.54906 * 104.82801 * 155.83532 * 11 10 8 13 13 C 1.55152 * 101.58547 * 37.00910 * 12 11 10 14 14 O 1.42905 * 110.71793 * 83.03711 * 13 12 11 15 15 C 1.50697 * 110.72157 * 206.13235 * 13 12 11 16 16 H 1.07997 * 119.99945 * 24.85520 * 15 13 12 17 17 C 1.37881 * 120.00071 * 204.85763 * 15 13 12 18 18 N 1.31510 * 120.00181 * 173.71742 * 17 15 13 19 19 Si 1.86802 * 119.99724 * 353.71540 * 17 15 13 20 20 H 1.48506 * 109.47139 * 87.22712 * 19 17 15 21 21 H 1.48497 * 109.47003 * 207.22123 * 19 17 15 22 22 H 1.48493 * 109.47330 * 327.22604 * 19 17 15 23 23 C 1.47023 * 125.64449 * 179.97438 * 10 8 6 24 24 C 1.54474 * 104.80506 * 40.51166 * 6 5 4 25 25 H 1.08998 * 109.47219 * 297.32383 * 1 2 3 26 26 H 1.09005 * 109.46701 * 57.32787 * 1 2 3 27 27 H 1.08997 * 109.46840 * 177.32264 * 1 2 3 28 28 H 1.09003 * 110.37365 * 24.16659 * 4 2 1 29 29 H 1.09004 * 110.37534 * 146.50261 * 4 2 1 30 30 H 1.09000 * 110.36235 * 37.00117 * 11 10 8 31 31 H 1.08996 * 110.36767 * 274.67659 * 11 10 8 32 32 H 1.09005 * 111.00655 * 278.93354 * 12 11 10 33 33 H 1.09003 * 111.00234 * 155.08671 * 12 11 10 34 34 H 0.96701 * 114.00317 * 58.51295 * 14 13 12 35 35 H 0.96995 * 120.00198 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.88147 * 61.67769 * 23 10 8 37 37 H 1.09002 * 109.88218 * 300.51345 * 23 10 8 38 38 H 1.08999 * 110.51082 * 94.66765 * 24 6 5 39 39 H 1.08998 * 110.51062 * 217.24258 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9130 1.0206 0.0000 4 6 2.0714 -0.7813 -1.2177 5 8 2.3071 -2.1177 -0.7235 6 6 2.8757 -1.9421 0.5923 7 1 3.9304 -1.6770 0.5194 8 6 2.7066 -3.1976 1.4087 9 8 2.1476 -4.1615 0.9300 10 7 3.1768 -3.2491 2.6708 11 6 3.8725 -2.1558 3.3738 12 6 3.6460 -2.4449 4.8787 13 6 3.7271 -3.9939 4.9141 14 8 5.0873 -4.4276 4.9766 15 6 2.9407 -4.5426 6.0766 16 1 2.1237 -3.9722 6.4931 17 6 3.2642 -5.7729 6.6085 18 7 2.6618 -6.1974 7.6977 19 14 4.5582 -6.8367 5.7818 20 1 5.9022 -6.4719 6.2976 21 1 4.2860 -8.2663 6.0771 22 1 4.5151 -6.6175 4.3138 23 6 3.0799 -4.4045 3.5747 24 6 2.0713 -0.7813 1.2182 25 1 -0.3633 0.4717 0.9130 26 1 -0.3633 0.5548 -0.8651 27 1 -0.3633 -1.0265 -0.0480 28 1 1.3312 -0.7975 -2.0177 29 1 3.0025 -0.3373 -1.5701 30 1 3.4379 -1.1936 3.1028 31 1 4.9370 -2.1716 3.1405 32 1 2.6639 -2.0977 5.1999 33 1 4.4341 -1.9984 5.4852 34 1 5.5725 -4.0919 5.7427 35 1 2.8896 -7.0627 8.0720 36 1 3.6148 -5.2538 3.1495 37 1 2.0332 -4.6645 3.7331 38 1 1.2490 -1.1675 1.8204 39 1 2.7214 -0.1484 1.8223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898086226.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:49 Heat of formation + Delta-G solvation = -151.671592 kcal Electronic energy + Delta-G solvation = -21748.785020 eV Core-core repulsion = 18462.359793 eV Total energy + Delta-G solvation = -3286.425226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.63983 -40.20359 -38.91682 -36.47234 -34.49013 -34.40906 -32.41439 -31.05047 -29.94101 -27.43010 -27.01156 -25.04612 -23.61765 -21.62976 -21.38263 -20.48693 -19.40049 -18.52894 -17.54983 -17.38384 -16.94720 -16.67732 -16.34391 -16.14001 -15.53756 -15.11954 -14.97024 -14.68110 -14.33647 -13.93581 -13.79674 -13.71806 -13.49906 -13.40288 -13.26048 -12.81439 -12.61711 -12.34880 -12.16435 -12.09892 -12.01120 -11.82238 -11.61754 -11.28724 -11.00967 -10.74070 -10.65116 -10.32458 -9.69834 -8.38875 -6.51633 1.41959 1.45984 1.49141 1.69109 1.73995 2.39335 2.94141 3.00400 3.29469 3.46598 3.59442 3.77693 3.83167 3.94794 4.08414 4.22082 4.22652 4.28809 4.46584 4.54300 4.60688 4.71605 4.76249 4.83471 4.85438 4.89895 4.92271 5.06810 5.11229 5.14780 5.25703 5.31799 5.34507 5.50523 5.78031 6.04355 6.49686 6.56949 6.98767 7.04747 7.28442 8.73941 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034644 B = 0.005035 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.035128 B = 5560.241300 C = 5723.225313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 H 0.124 0.876 4 C 0.037 3.963 5 O -0.387 6.387 6 C 0.069 3.931 7 H 0.124 0.876 8 C 0.516 3.484 9 O -0.590 6.590 10 N -0.610 5.610 11 C 0.095 3.905 12 C -0.137 4.137 13 C 0.218 3.782 14 O -0.563 6.563 15 C -0.547 4.547 16 H 0.051 0.949 17 C 0.029 3.971 18 N -0.932 5.932 19 Si 1.000 3.000 20 H -0.267 1.267 21 H -0.339 1.339 22 H -0.280 1.280 23 C 0.120 3.880 24 C -0.140 4.140 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.389 0.611 35 H 0.267 0.733 36 H 0.038 0.962 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 19.077 -12.951 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 H 0.142 0.858 4 C -0.039 4.039 5 O -0.306 6.306 6 C 0.009 3.991 7 H 0.141 0.859 8 C 0.305 3.695 9 O -0.470 6.470 10 N -0.344 5.344 11 C -0.026 4.026 12 C -0.175 4.175 13 C 0.177 3.823 14 O -0.373 6.373 15 C -0.585 4.585 16 H 0.069 0.931 17 C -0.172 4.172 18 N -0.569 5.569 19 Si 0.835 3.165 20 H -0.193 1.193 21 H -0.272 1.272 22 H -0.207 1.207 23 C -0.003 4.003 24 C -0.178 4.178 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.128 0.872 34 H 0.239 0.761 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.342 17.985 -13.800 22.914 hybrid contribution 0.133 -1.170 0.679 1.359 sum 3.474 16.815 -13.122 21.610 Atomic orbital electron populations 1.21864 0.94366 1.01043 1.03081 1.22572 0.96892 1.01156 0.92848 0.85825 1.23888 1.01779 0.81062 0.97206 1.89251 1.83402 1.28753 1.29151 1.22902 1.00829 0.91445 0.83950 0.85913 1.20868 0.77773 0.89983 0.80858 1.90666 1.44947 1.40001 1.71398 1.48657 1.56863 1.16745 1.12095 1.22811 0.98012 0.90142 0.91603 1.23304 1.03719 0.95171 0.95347 1.19876 0.79630 0.92706 0.90067 1.86085 1.25014 1.74612 1.51630 1.21483 1.17908 1.04310 1.14820 0.93058 1.25815 0.98223 0.98783 0.94343 1.70057 1.44274 1.21012 1.21583 0.84846 0.79212 0.73631 0.78848 1.19294 1.27171 1.20717 1.22261 0.99485 0.88512 0.90081 1.23164 1.00257 0.95258 0.99133 0.91614 0.90571 0.95016 0.88139 0.89445 0.87020 0.89188 0.90829 0.87169 0.76061 0.92370 0.94393 0.93112 0.92020 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.94 71.99 0.64 -1.63 16 2 C -0.12 -1.62 3.72 -9.78 -0.04 -1.66 16 3 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 4 C 0.04 0.63 7.18 72.48 0.52 1.15 16 5 O -0.39 -11.39 10.91 -130.60 -1.42 -12.81 16 6 C 0.07 1.79 3.13 30.35 0.09 1.88 16 7 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 8 C 0.52 19.47 7.14 87.66 0.63 20.10 16 9 O -0.59 -28.95 16.88 15.36 0.26 -28.69 16 10 N -0.61 -22.04 3.33 -811.80 -2.70 -24.74 16 11 C 0.10 2.39 6.62 86.85 0.57 2.96 16 12 C -0.14 -4.17 6.22 31.98 0.20 -3.97 16 13 C 0.22 9.16 0.68 -10.36 -0.01 9.15 16 14 O -0.56 -22.24 8.52 -148.98 -1.27 -23.51 16 15 C -0.55 -28.97 8.72 25.60 0.22 -28.75 16 16 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 17 C 0.03 1.62 5.46 84.66 0.46 2.09 16 18 N -0.93 -56.41 13.96 21.45 0.30 -56.11 16 19 Si 1.00 49.18 24.87 68.60 1.71 50.89 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.34 -17.40 7.11 99.48 0.71 -16.69 16 22 H -0.28 -14.20 5.42 99.48 0.54 -13.66 16 23 C 0.12 5.44 5.83 86.73 0.51 5.94 16 24 C -0.14 -2.55 5.08 31.61 0.16 -2.39 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 1.56 7.87 -2.39 -0.02 1.54 16 29 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.11 1.90 5.17 -2.39 -0.01 1.89 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 2.35 7.99 -2.38 -0.02 2.33 16 33 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.39 12.49 8.94 -74.06 -0.66 11.83 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.04 1.91 6.69 -2.38 -0.02 1.89 16 37 H 0.05 2.57 7.81 -2.39 -0.02 2.55 16 38 H 0.06 1.43 7.46 -2.39 -0.02 1.41 16 39 H 0.12 1.33 6.66 -2.39 -0.02 1.31 16 Total: -1.00 -79.18 306.84 1.06 -78.12 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.22 Total: 11.99 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 3.97 Total: 4.86 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.40 Total: -80.85 kcal Atomic # 8 Polarization: -62.59 SS G_CDS: -2.43 Total: -65.02 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.71 Total: 50.89 kcal Total: -79.18 1.06 -78.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898086226.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.551 kcal (2) G-P(sol) polarization free energy of solvation -79.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds