Wall clock time and date at job start Mon Mar 30 2020 01:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.45834 * 2 1 4 4 C 1.54489 * 110.50773 * 237.39830 * 2 1 3 5 5 O 1.44423 * 104.79978 * 217.23630 * 4 2 1 6 6 C 1.44428 * 105.27473 * 40.51192 * 5 4 2 7 7 H 1.09000 * 110.37388 * 78.43179 * 6 5 4 8 8 C 1.50705 * 110.37112 * 200.65188 * 6 5 4 9 9 O 1.21281 * 119.99961 * 3.55270 * 8 6 5 10 10 N 1.34774 * 119.99741 * 183.54574 * 8 6 5 11 11 C 1.47422 * 125.65171 * 359.94939 * 10 8 6 12 12 C 1.54908 * 104.83357 * 155.91447 * 11 10 8 13 13 C 1.55156 * 101.58197 * 37.01425 * 12 11 10 14 14 O 1.42902 * 110.87534 * 82.92925 * 13 12 11 15 15 C 1.50698 * 110.72267 * 206.13524 * 13 12 11 16 16 H 1.07999 * 120.00434 * 113.51617 * 15 13 12 17 17 C 1.37880 * 119.99910 * 293.51912 * 15 13 12 18 18 N 1.31517 * 120.00024 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00209 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47215 * 89.99717 * 19 17 15 21 21 H 1.48493 * 109.47057 * 210.00303 * 19 17 15 22 22 H 1.48502 * 109.47018 * 330.00233 * 19 17 15 23 23 C 1.47031 * 125.64691 * 180.02562 * 10 8 6 24 24 C 1.54476 * 104.80596 * 319.48586 * 6 5 4 25 25 H 1.08994 * 109.47097 * 181.15074 * 1 2 3 26 26 H 1.09000 * 109.46599 * 301.14984 * 1 2 3 27 27 H 1.08997 * 109.47114 * 61.14750 * 1 2 3 28 28 H 1.08994 * 110.37158 * 98.41031 * 4 2 1 29 29 H 1.08996 * 110.46425 * 336.11692 * 4 2 1 30 30 H 1.09000 * 110.36378 * 37.07938 * 11 10 8 31 31 H 1.08998 * 110.37024 * 274.75654 * 11 10 8 32 32 H 1.08999 * 111.00895 * 278.93886 * 12 11 10 33 33 H 1.09003 * 111.00533 * 155.08158 * 12 11 10 34 34 H 0.96700 * 113.99769 * 66.39526 * 14 13 12 35 35 H 0.96992 * 119.99999 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.88059 * 61.59780 * 23 10 8 37 37 H 1.08994 * 109.87878 * 300.43060 * 23 10 8 38 38 H 1.08999 * 110.51457 * 142.62229 * 24 6 5 39 39 H 1.09003 * 110.50883 * 265.33274 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0712 -0.7796 -1.2190 5 8 3.2417 -1.4678 -0.7268 6 6 2.8801 -1.9399 0.5894 7 1 2.2640 -2.8360 0.5151 8 6 4.1165 -2.2208 1.4040 9 8 5.2128 -1.9795 0.9450 10 7 4.0038 -2.7400 2.6426 11 6 2.7393 -3.0786 3.3206 12 6 3.1251 -4.1565 4.3641 13 6 4.5161 -3.6532 4.8322 14 8 4.3814 -2.6451 5.8360 15 6 5.3549 -4.7982 5.3384 16 1 6.2447 -5.0940 4.8026 17 6 4.9863 -5.4683 6.4856 18 7 3.9024 -5.1086 7.1379 19 14 6.0256 -6.8882 7.1128 20 1 7.0597 -6.3709 8.0446 21 1 5.1579 -7.8595 7.8259 22 1 6.6856 -7.5628 5.9662 23 6 5.1217 -3.0610 3.5421 24 6 2.0744 -0.7809 1.2170 25 1 -0.3633 -1.0274 0.0206 26 1 -0.3632 0.5316 0.8795 27 1 -0.3633 0.4959 -0.9001 28 1 2.3441 -0.0914 -2.0189 29 1 1.3302 -1.4965 -1.5725 30 1 2.0220 -3.4821 2.6059 31 1 2.3279 -2.1999 3.8172 32 1 3.2013 -5.1399 3.9002 33 1 2.4160 -4.1706 5.1918 34 1 4.0053 -2.9655 6.6673 35 1 3.6433 -5.5798 7.9451 36 1 5.6806 -2.1551 3.7766 37 1 5.7780 -3.7926 3.0711 38 1 1.2535 -1.1690 1.8200 39 1 2.7245 -0.1458 1.8187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898086227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:52 Heat of formation + Delta-G solvation = -133.485939 kcal Electronic energy + Delta-G solvation = -21563.104562 eV Core-core repulsion = 18277.467924 eV Total energy + Delta-G solvation = -3285.636637 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26177 -38.70603 -37.05893 -34.42257 -33.63552 -32.18502 -30.81576 -29.34661 -28.19579 -26.44561 -25.32609 -23.65839 -22.11451 -20.57646 -19.83931 -18.94348 -17.43968 -16.90929 -16.19441 -15.87086 -15.24910 -15.02081 -14.72933 -14.44875 -14.15087 -13.92632 -13.42962 -13.18452 -12.98554 -12.49188 -12.41167 -12.03882 -11.72533 -11.60794 -11.39453 -11.37528 -11.32825 -11.00728 -10.91170 -10.80276 -10.64193 -10.50650 -10.16024 -9.96455 -9.47054 -9.20879 -8.69504 -8.25752 -8.05276 -6.33311 -4.40364 2.96853 3.16760 3.18749 3.26062 3.30761 4.05996 4.24221 4.36296 4.56442 4.71753 4.85116 4.95800 5.03224 5.13935 5.26133 5.37280 5.47507 5.49692 5.59292 5.63556 5.73486 5.81795 5.86004 5.90704 5.97256 6.02494 6.15289 6.42514 6.61394 6.69678 6.86398 6.94619 7.25568 7.29605 7.70204 7.96496 8.04731 8.58803 8.63273 9.28081 9.41544 10.74644 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037589 B = 0.004529 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.728083 B = 6180.292388 C = 6532.570592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 H 0.085 0.915 4 C 0.045 3.955 5 O -0.346 6.346 6 C 0.064 3.936 7 H 0.091 0.909 8 C 0.526 3.474 9 O -0.535 6.535 10 N -0.606 5.606 11 C 0.095 3.905 12 C -0.137 4.137 13 C 0.248 3.752 14 O -0.586 6.586 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.123 3.877 24 C -0.139 4.139 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.386 0.614 35 H 0.269 0.731 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.963 6.117 -9.529 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.103 0.897 4 C -0.032 4.032 5 O -0.264 6.264 6 C 0.003 3.997 7 H 0.108 0.892 8 C 0.313 3.687 9 O -0.412 6.412 10 N -0.340 5.340 11 C -0.028 4.028 12 C -0.176 4.176 13 C 0.208 3.792 14 O -0.397 6.397 15 C -0.573 4.573 16 H 0.084 0.916 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.197 1.197 23 C 0.002 3.998 24 C -0.177 4.177 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.238 0.762 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.005 6.574 -10.278 15.164 hybrid contribution -0.075 -1.156 0.971 1.512 sum -9.080 5.419 -9.307 14.086 Atomic orbital electron populations 1.21812 0.93819 1.02248 1.02153 1.22544 0.96618 1.00623 0.94727 0.89651 1.23573 0.88018 0.95076 0.96512 1.89267 1.34661 1.73660 1.28763 1.22789 0.94190 0.98227 0.84518 0.89156 1.19697 0.90082 0.78065 0.80845 1.90687 1.27981 1.52343 1.70186 1.48554 1.09908 1.61470 1.14086 1.22543 0.85599 0.99292 0.95369 1.23325 1.01090 0.96238 0.96957 1.19426 0.90427 0.85411 0.83938 1.86099 1.87101 1.38977 1.27505 1.21562 1.10748 1.14859 1.10180 0.91645 1.24983 0.94796 0.97197 0.95998 1.69568 1.23818 1.42115 1.18373 0.86393 0.80048 0.81399 0.79041 1.20347 1.21019 1.19679 1.22109 0.88331 0.99845 0.89522 1.22980 1.00018 0.96512 0.98152 0.92241 0.92050 0.92312 0.88877 0.91999 0.92271 0.91724 0.91352 0.89551 0.76170 0.92073 0.91986 0.90923 0.89359 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.95 37.16 0.33 -0.73 16 2 C -0.13 -1.24 3.71 -89.05 -0.33 -1.58 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.05 0.49 7.18 37.94 0.27 0.76 16 5 O -0.35 -5.57 10.91 -54.42 -0.59 -6.16 16 6 C 0.06 0.97 2.99 -27.11 -0.08 0.89 16 7 H 0.09 1.20 7.61 -51.93 -0.40 0.80 16 8 C 0.53 10.42 7.12 -10.98 -0.08 10.34 16 9 O -0.53 -12.71 16.88 -13.63 -0.23 -12.94 16 10 N -0.61 -12.01 3.33 -170.52 -0.57 -12.58 16 11 C 0.09 1.64 5.96 -2.53 -0.02 1.63 16 12 C -0.14 -2.87 5.68 -24.58 -0.14 -3.01 16 13 C 0.25 5.91 0.86 -89.94 -0.08 5.83 16 14 O -0.59 -14.57 13.09 -35.23 -0.46 -15.04 16 15 C -0.54 -13.85 8.21 -34.44 -0.28 -14.13 16 16 H 0.07 1.71 7.53 -52.49 -0.40 1.31 16 17 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 18 N -0.90 -22.66 10.70 55.43 0.59 -22.06 16 19 Si 0.90 20.03 29.54 -169.99 -5.02 15.00 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 23 C 0.12 2.80 6.22 -3.06 -0.02 2.78 16 24 C -0.14 -1.69 5.59 -25.17 -0.14 -1.83 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.57 7.87 -51.93 -0.41 0.16 16 30 H 0.06 0.84 7.32 -51.93 -0.38 0.46 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 33 H 0.09 1.86 7.77 -51.93 -0.40 1.45 16 34 H 0.39 9.66 6.98 45.56 0.32 9.98 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.06 1.46 8.07 -51.93 -0.42 1.04 16 37 H 0.07 1.68 7.63 -51.93 -0.40 1.29 16 38 H 0.09 0.92 7.60 -51.93 -0.39 0.52 16 39 H 0.08 1.11 7.86 -51.93 -0.41 0.71 16 LS Contribution 314.98 15.07 4.75 4.75 Total: -1.00 -29.66 314.98 -7.56 -37.22 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.37 Total: 9.12 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.65 Total: 2.69 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.03 Total: -34.64 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.29 Total: -34.14 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.66 -7.56 -37.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898086227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.265 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds