Wall clock time and date at job start Mon Mar 30 2020 01:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.45834 * 2 1 4 4 C 1.54489 * 110.50773 * 237.39830 * 2 1 3 5 5 O 1.44423 * 104.79978 * 217.23630 * 4 2 1 6 6 C 1.44428 * 105.27473 * 40.51192 * 5 4 2 7 7 H 1.09000 * 110.37388 * 78.43179 * 6 5 4 8 8 C 1.50705 * 110.37112 * 200.65188 * 6 5 4 9 9 O 1.21281 * 119.99961 * 3.55270 * 8 6 5 10 10 N 1.34774 * 119.99741 * 183.54574 * 8 6 5 11 11 C 1.47422 * 125.65171 * 359.94939 * 10 8 6 12 12 C 1.54908 * 104.83357 * 155.91447 * 11 10 8 13 13 C 1.55156 * 101.58197 * 37.01425 * 12 11 10 14 14 O 1.42902 * 110.87534 * 82.92925 * 13 12 11 15 15 C 1.50698 * 110.72267 * 206.13524 * 13 12 11 16 16 H 1.07999 * 120.00434 * 113.51617 * 15 13 12 17 17 C 1.37880 * 119.99910 * 293.51912 * 15 13 12 18 18 N 1.31517 * 120.00024 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00209 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47215 * 89.99717 * 19 17 15 21 21 H 1.48493 * 109.47057 * 210.00303 * 19 17 15 22 22 H 1.48502 * 109.47018 * 330.00233 * 19 17 15 23 23 C 1.47031 * 125.64691 * 180.02562 * 10 8 6 24 24 C 1.54476 * 104.80596 * 319.48586 * 6 5 4 25 25 H 1.08994 * 109.47097 * 181.15074 * 1 2 3 26 26 H 1.09000 * 109.46599 * 301.14984 * 1 2 3 27 27 H 1.08997 * 109.47114 * 61.14750 * 1 2 3 28 28 H 1.08994 * 110.37158 * 98.41031 * 4 2 1 29 29 H 1.08996 * 110.46425 * 336.11692 * 4 2 1 30 30 H 1.09000 * 110.36378 * 37.07938 * 11 10 8 31 31 H 1.08998 * 110.37024 * 274.75654 * 11 10 8 32 32 H 1.08999 * 111.00895 * 278.93886 * 12 11 10 33 33 H 1.09003 * 111.00533 * 155.08158 * 12 11 10 34 34 H 0.96700 * 113.99769 * 66.39526 * 14 13 12 35 35 H 0.96992 * 119.99999 * 180.02562 * 18 17 15 36 36 H 1.08998 * 109.88059 * 61.59780 * 23 10 8 37 37 H 1.08994 * 109.87878 * 300.43060 * 23 10 8 38 38 H 1.08999 * 110.51457 * 142.62229 * 24 6 5 39 39 H 1.09003 * 110.50883 * 265.33274 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0712 -0.7796 -1.2190 5 8 3.2417 -1.4678 -0.7268 6 6 2.8801 -1.9399 0.5894 7 1 2.2640 -2.8360 0.5151 8 6 4.1165 -2.2208 1.4040 9 8 5.2128 -1.9795 0.9450 10 7 4.0038 -2.7400 2.6426 11 6 2.7393 -3.0786 3.3206 12 6 3.1251 -4.1565 4.3641 13 6 4.5161 -3.6532 4.8322 14 8 4.3814 -2.6451 5.8360 15 6 5.3549 -4.7982 5.3384 16 1 6.2447 -5.0940 4.8026 17 6 4.9863 -5.4683 6.4856 18 7 3.9024 -5.1086 7.1379 19 14 6.0256 -6.8882 7.1128 20 1 7.0597 -6.3709 8.0446 21 1 5.1579 -7.8595 7.8259 22 1 6.6856 -7.5628 5.9662 23 6 5.1217 -3.0610 3.5421 24 6 2.0744 -0.7809 1.2170 25 1 -0.3633 -1.0274 0.0206 26 1 -0.3632 0.5316 0.8795 27 1 -0.3633 0.4959 -0.9001 28 1 2.3441 -0.0914 -2.0189 29 1 1.3302 -1.4965 -1.5725 30 1 2.0220 -3.4821 2.6059 31 1 2.3279 -2.1999 3.8172 32 1 3.2013 -5.1399 3.9002 33 1 2.4160 -4.1706 5.1918 34 1 4.0053 -2.9655 6.6673 35 1 3.6433 -5.5798 7.9451 36 1 5.6806 -2.1551 3.7766 37 1 5.7780 -3.7926 3.0711 38 1 1.2535 -1.1690 1.8200 39 1 2.7245 -0.1458 1.8187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898086227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:51 Heat of formation + Delta-G solvation = -154.202824 kcal Electronic energy + Delta-G solvation = -21564.002913 eV Core-core repulsion = 18277.467924 eV Total energy + Delta-G solvation = -3286.534989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.58009 -40.08552 -38.74382 -36.19863 -34.52834 -34.15663 -32.22599 -30.83075 -29.84731 -27.26603 -26.97543 -25.00878 -23.55384 -21.62669 -21.37861 -20.47146 -19.25553 -18.39013 -17.48896 -17.14300 -16.95893 -16.47350 -16.06560 -16.00681 -15.56370 -15.03855 -14.80729 -14.76929 -13.98005 -13.83758 -13.83729 -13.44586 -13.25368 -13.17057 -13.12484 -12.76519 -12.62328 -12.43188 -12.27442 -12.16894 -11.99285 -11.76313 -11.62674 -11.30882 -11.04327 -10.72876 -10.59422 -10.15388 -9.70353 -8.27001 -6.40796 1.41310 1.44731 1.45907 1.53015 1.74342 2.38810 2.98284 2.99049 3.29801 3.59058 3.79121 3.82257 3.91605 3.97929 4.13789 4.20517 4.28041 4.40317 4.54207 4.56039 4.61995 4.66063 4.76578 4.84730 4.87451 4.88933 5.11849 5.14959 5.18860 5.24349 5.39666 5.44809 5.51533 5.73325 5.75410 6.04441 6.49836 6.62404 7.03736 7.30216 7.44303 8.79584 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037589 B = 0.004529 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.728083 B = 6180.292388 C = 6532.570592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.039 3.961 5 O -0.384 6.384 6 C 0.070 3.930 7 H 0.119 0.881 8 C 0.519 3.481 9 O -0.586 6.586 10 N -0.606 5.606 11 C 0.103 3.897 12 C -0.129 4.129 13 C 0.237 3.763 14 O -0.594 6.594 15 C -0.566 4.566 16 H 0.050 0.950 17 C 0.040 3.960 18 N -0.906 5.906 19 Si 0.959 3.041 20 H -0.278 1.278 21 H -0.274 1.274 22 H -0.275 1.275 23 C 0.128 3.872 24 C -0.136 4.136 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.383 0.617 35 H 0.274 0.726 36 H 0.042 0.958 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.544 6.012 -10.139 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.138 4.138 3 H 0.102 0.898 4 C -0.037 4.037 5 O -0.303 6.303 6 C 0.009 3.991 7 H 0.137 0.863 8 C 0.308 3.692 9 O -0.467 6.467 10 N -0.339 5.339 11 C -0.019 4.019 12 C -0.168 4.168 13 C 0.197 3.803 14 O -0.404 6.404 15 C -0.604 4.604 16 H 0.069 0.931 17 C -0.161 4.161 18 N -0.546 5.546 19 Si 0.784 3.216 20 H -0.204 1.204 21 H -0.199 1.199 22 H -0.200 1.200 23 C 0.005 3.995 24 C -0.174 4.174 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.629 6.477 -10.887 17.196 hybrid contribution 0.774 -1.092 1.156 1.768 sum -10.856 5.385 -9.731 15.542 Atomic orbital electron populations 1.21795 0.91454 1.03117 1.03158 1.22526 0.98410 0.99949 0.92935 0.89795 1.23883 0.87037 0.95693 0.97100 1.89236 1.37535 1.74500 1.29059 1.22858 0.91702 1.00497 0.84013 0.86322 1.20719 0.91256 0.76619 0.80603 1.90651 1.30426 1.54361 1.71212 1.48598 1.09853 1.61367 1.14076 1.22635 0.85055 0.98799 0.95368 1.23118 0.98983 0.96938 0.97714 1.19550 0.92149 0.84835 0.83755 1.86084 1.87246 1.39452 1.27644 1.21763 1.11137 1.16307 1.11198 0.93128 1.25550 0.95757 0.98944 0.95882 1.69609 1.24115 1.42480 1.18371 0.85547 0.78747 0.79027 0.78235 1.20434 1.19948 1.20041 1.21835 0.89270 0.98393 0.90012 1.23033 0.99913 0.95425 0.99046 0.91394 0.91559 0.90915 0.87720 0.89711 0.87850 0.90308 0.92089 0.90046 0.76498 0.91650 0.93997 0.92455 0.86779 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.95 71.98 0.64 -0.82 16 2 C -0.12 -1.99 3.71 -9.78 -0.04 -2.03 16 3 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 4 C 0.04 0.73 7.18 72.49 0.52 1.25 16 5 O -0.38 -11.85 10.91 -130.63 -1.43 -13.28 16 6 C 0.07 1.98 2.99 30.35 0.09 2.07 16 7 H 0.12 2.68 7.61 -2.39 -0.02 2.66 16 8 C 0.52 20.46 7.12 87.66 0.62 21.08 16 9 O -0.59 -28.74 16.88 15.32 0.26 -28.48 16 10 N -0.61 -23.82 3.33 -811.79 -2.70 -26.52 16 11 C 0.10 3.33 5.96 86.86 0.52 3.85 16 12 C -0.13 -5.26 5.68 31.99 0.18 -5.08 16 13 C 0.24 11.45 0.86 -10.35 -0.01 11.45 16 14 O -0.59 -29.91 13.09 -148.98 -1.95 -31.86 16 15 C -0.57 -29.89 8.21 25.60 0.21 -29.68 16 16 H 0.05 2.74 7.53 -2.91 -0.02 2.72 16 17 C 0.04 2.02 5.28 84.65 0.45 2.47 16 18 N -0.91 -45.24 10.70 21.45 0.23 -45.01 16 19 Si 0.96 40.97 29.54 68.60 2.03 42.99 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.13 5.99 6.22 86.73 0.54 6.53 16 24 C -0.14 -2.96 5.59 31.61 0.18 -2.78 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.21 7.87 -2.39 -0.02 1.20 16 30 H 0.10 2.49 7.32 -2.39 -0.02 2.47 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 2.55 8.04 -2.39 -0.02 2.53 16 33 H 0.08 3.40 7.77 -2.39 -0.02 3.39 16 34 H 0.38 19.36 6.98 -74.06 -0.52 18.84 16 35 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 36 H 0.04 2.08 8.07 -2.39 -0.02 2.06 16 37 H 0.06 2.81 7.63 -2.39 -0.02 2.79 16 38 H 0.11 1.87 7.60 -2.39 -0.02 1.85 16 39 H 0.06 1.55 7.86 -2.39 -0.02 1.54 16 Total: -1.00 -66.05 314.98 0.87 -65.17 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.53 Total: 28.68 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 3.91 Total: 8.30 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -2.47 Total: -71.53 kcal Atomic # 8 Polarization: -70.50 SS G_CDS: -3.12 Total: -73.62 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -66.05 0.87 -65.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898086227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.030 kcal (2) G-P(sol) polarization free energy of solvation -66.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds