Wall clock time and date at job start Mon Mar 30 2020 01:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46899 * 2 1 4 4 C 1.46762 * 124.35084 * 90.00343 * 3 2 1 5 5 C 1.54472 * 105.47562 * 162.95689 * 4 3 2 6 6 H 1.09005 * 110.97015 * 143.56562 * 5 4 3 7 7 C 1.50696 * 110.97338 * 267.29908 * 5 4 3 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 5 4 9 9 O 1.34231 * 120.00640 * 180.27611 * 7 5 4 10 10 C 1.45193 * 117.00126 * 179.71955 * 9 7 5 11 11 C 1.53006 * 109.46665 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46922 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.46874 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00063 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99583 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00139 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99712 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47169 * 89.99891 * 17 15 13 19 19 H 1.48501 * 109.46997 * 209.99391 * 17 15 13 20 20 H 1.48501 * 109.47313 * 330.00044 * 17 15 13 21 21 C 1.54633 * 101.76311 * 25.41415 * 5 4 3 22 22 C 1.34416 * 124.34756 * 269.97053 * 3 2 1 23 23 O 1.21282 * 124.94308 * 0.47107 * 22 3 2 24 24 H 1.09001 * 109.47144 * 300.00235 * 1 2 3 25 25 H 1.09004 * 109.46999 * 59.99960 * 1 2 3 26 26 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47144 * 239.99765 * 2 1 3 28 28 H 1.08996 * 109.46984 * 119.99706 * 2 1 3 29 29 H 1.08999 * 110.24218 * 43.95454 * 4 3 2 30 30 H 1.09002 * 110.31854 * 281.99598 * 4 3 2 31 31 H 1.08997 * 109.47488 * 299.99586 * 10 9 7 32 32 H 1.08997 * 109.47515 * 60.00401 * 10 9 7 33 33 H 1.08997 * 109.47361 * 299.99752 * 11 10 9 34 34 H 1.08997 * 109.47194 * 60.00320 * 11 10 9 35 35 H 1.08997 * 109.46804 * 299.99976 * 12 11 10 36 36 H 1.08997 * 109.47020 * 60.00097 * 12 11 10 37 37 H 0.96998 * 120.00042 * 179.97438 * 16 15 13 38 38 H 1.08996 * 110.48542 * 93.88348 * 21 5 4 39 39 H 1.09004 * 110.48639 * 216.52138 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1749 3.3438 0.7488 6 1 2.9317 4.2513 1.3014 7 6 4.6385 3.0104 0.8818 8 8 4.9760 1.9308 1.3068 9 8 5.5673 3.9149 0.5340 10 6 6.9573 3.5275 0.6945 11 6 7.8621 4.6783 0.2494 12 6 9.3270 4.2699 0.4180 13 6 10.2181 5.4036 -0.0198 14 1 9.7831 6.3233 -0.3824 15 6 11.5886 5.2664 0.0417 16 7 12.1182 4.1463 0.4828 17 14 12.6932 6.6714 -0.5017 18 1 12.9786 7.5538 0.6582 19 1 13.9675 6.1228 -1.0315 20 1 12.0119 7.4546 -1.5636 21 6 2.7703 3.4750 -0.7379 22 6 2.2716 2.0961 -1.1098 23 8 2.1215 1.6943 -2.2442 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8320 1.5530 1.9384 30 1 1.3644 2.5312 1.6441 31 1 7.1515 3.2965 1.7419 32 1 7.1623 2.6479 0.0843 33 1 7.6679 4.9090 -0.7980 34 1 7.6574 5.5582 0.8593 35 1 9.5215 4.0390 1.4653 36 1 9.5314 3.3902 -0.1921 37 1 13.0824 4.0496 0.5256 38 1 1.9756 4.2121 -0.8533 39 1 3.6337 3.7453 -1.3458 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914911036.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:52 Heat of formation + Delta-G solvation = -138.116382 kcal Electronic energy + Delta-G solvation = -20246.475712 eV Core-core repulsion = 16960.638284 eV Total energy + Delta-G solvation = -3285.837429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25563 -39.78153 -36.98374 -36.22497 -34.35457 -33.97641 -31.74149 -30.13513 -28.09397 -27.21169 -24.79483 -23.47399 -22.78660 -20.62381 -20.27774 -19.63742 -17.98266 -17.14831 -16.93714 -16.34025 -16.17388 -15.70110 -15.25516 -14.49346 -14.38156 -14.27473 -13.85817 -13.70413 -13.40791 -13.15857 -12.56918 -12.34727 -12.25707 -12.15554 -12.04409 -11.96018 -11.78167 -11.37983 -10.99286 -10.69611 -10.68008 -10.45721 -10.42087 -10.04077 -9.76789 -9.53789 -9.19029 -9.04120 -8.40690 -6.05403 -4.08610 2.13168 2.33134 2.60822 2.74572 3.29918 3.36275 3.39789 3.87574 3.98283 4.36267 4.41991 4.60510 4.73534 4.83804 4.94595 5.03833 5.12328 5.20785 5.30663 5.36784 5.38629 5.43156 5.51854 5.55666 5.57092 5.81925 5.95502 6.23140 6.41287 6.49598 6.76972 6.81452 6.94237 7.57503 7.68144 7.76954 7.90620 7.92684 8.33461 8.97648 9.55888 11.06071 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043083 B = 0.002937 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.754930 B = 9531.927680 C = 9658.570926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.617 5.617 4 C 0.113 3.887 5 C -0.099 4.099 6 H 0.137 0.863 7 C 0.463 3.537 8 O -0.504 6.504 9 O -0.353 6.353 10 C 0.068 3.932 11 C -0.109 4.109 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.145 4.145 22 C 0.516 3.484 23 O -0.528 6.528 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.262 0.738 38 H 0.121 0.879 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.933 -3.742 3.033 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.001 3.999 3 N -0.351 5.351 4 C -0.010 4.010 5 C -0.119 4.119 6 H 0.155 0.845 7 C 0.305 3.695 8 O -0.392 6.392 9 O -0.269 6.269 10 C -0.005 4.005 11 C -0.147 4.147 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.185 4.185 22 C 0.303 3.697 23 O -0.404 6.404 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.139 0.861 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -23.710 -4.451 2.586 24.262 hybrid contribution 0.849 0.595 -0.061 1.039 sum -22.860 -3.856 2.524 23.320 Atomic orbital electron populations 1.22160 0.95682 1.02426 1.02380 1.21359 0.94204 0.80814 1.03555 1.48263 1.65880 1.13993 1.06985 1.22069 0.98672 0.91983 0.88231 1.21970 0.89014 1.01759 0.99121 0.84493 1.23108 0.89133 0.82762 0.74501 1.90672 1.82666 1.23984 1.41849 1.86478 1.18737 1.44621 1.77082 1.23562 0.74652 1.00338 1.01908 1.21776 0.96164 0.95600 1.01112 1.19054 0.87361 0.97307 0.97606 1.21165 0.91039 1.00465 1.43340 0.92399 1.25034 0.98308 0.95864 0.95274 1.69963 1.11571 1.25233 1.46603 0.86541 0.80018 0.82213 0.78923 1.20599 1.21180 1.19789 1.22376 1.04789 0.96740 0.94610 1.20844 0.76786 0.87504 0.84531 1.90738 1.53504 1.75155 1.20988 0.92393 0.92246 0.91344 0.89950 0.90054 0.88351 0.89545 0.91355 0.91473 0.92070 0.92057 0.96241 0.96229 0.92865 0.86058 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.12 1.06 6.65 -4.04 -0.03 1.03 16 3 N -0.62 -6.18 2.93 -172.42 -0.51 -6.69 16 4 C 0.11 0.87 6.68 -3.13 -0.02 0.84 16 5 C -0.10 -0.84 3.66 -90.14 -0.33 -1.17 16 6 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 7 C 0.46 6.27 7.19 36.00 0.26 6.53 16 8 O -0.50 -8.23 15.28 -18.76 -0.29 -8.52 16 9 O -0.35 -5.44 10.21 -39.26 -0.40 -5.85 16 10 C 0.07 1.22 5.47 37.16 0.20 1.42 16 11 C -0.11 -2.21 5.53 -26.72 -0.15 -2.36 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.15 -1.31 6.40 -26.74 -0.17 -1.48 16 22 C 0.52 6.34 8.02 -10.86 -0.09 6.25 16 23 O -0.53 -8.57 17.60 5.56 0.10 -8.48 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.84 7.02 -51.93 -0.36 0.47 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 32 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.12 1.18 7.89 -51.93 -0.41 0.77 16 LS Contribution 334.26 15.07 5.04 5.04 Total: -1.00 -34.37 334.26 -7.06 -41.42 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -6.22 Total: -4.72 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.49 Total: -2.64 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.23 Total: -32.72 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.59 Total: -22.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.37 -7.06 -41.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914911036.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.694 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds