Wall clock time and date at job start Mon Mar 30 2020 01:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46899 * 2 1 4 4 C 1.46762 * 124.35084 * 90.00343 * 3 2 1 5 5 C 1.54472 * 105.47562 * 162.95689 * 4 3 2 6 6 H 1.09005 * 110.97015 * 143.56562 * 5 4 3 7 7 C 1.50696 * 110.97338 * 267.29908 * 5 4 3 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 5 4 9 9 O 1.34231 * 120.00640 * 180.27611 * 7 5 4 10 10 C 1.45193 * 117.00126 * 179.71955 * 9 7 5 11 11 C 1.53006 * 109.46665 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.46922 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.46874 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00063 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99583 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00139 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99712 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47169 * 89.99891 * 17 15 13 19 19 H 1.48501 * 109.46997 * 209.99391 * 17 15 13 20 20 H 1.48501 * 109.47313 * 330.00044 * 17 15 13 21 21 C 1.54633 * 101.76311 * 25.41415 * 5 4 3 22 22 C 1.34416 * 124.34756 * 269.97053 * 3 2 1 23 23 O 1.21282 * 124.94308 * 0.47107 * 22 3 2 24 24 H 1.09001 * 109.47144 * 300.00235 * 1 2 3 25 25 H 1.09004 * 109.46999 * 59.99960 * 1 2 3 26 26 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47144 * 239.99765 * 2 1 3 28 28 H 1.08996 * 109.46984 * 119.99706 * 2 1 3 29 29 H 1.08999 * 110.24218 * 43.95454 * 4 3 2 30 30 H 1.09002 * 110.31854 * 281.99598 * 4 3 2 31 31 H 1.08997 * 109.47488 * 299.99586 * 10 9 7 32 32 H 1.08997 * 109.47515 * 60.00401 * 10 9 7 33 33 H 1.08997 * 109.47361 * 299.99752 * 11 10 9 34 34 H 1.08997 * 109.47194 * 60.00320 * 11 10 9 35 35 H 1.08997 * 109.46804 * 299.99976 * 12 11 10 36 36 H 1.08997 * 109.47020 * 60.00097 * 12 11 10 37 37 H 0.96998 * 120.00042 * 179.97438 * 16 15 13 38 38 H 1.08996 * 110.48542 * 93.88348 * 21 5 4 39 39 H 1.09004 * 110.48639 * 216.52138 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 3.1749 3.3438 0.7488 6 1 2.9317 4.2513 1.3014 7 6 4.6385 3.0104 0.8818 8 8 4.9760 1.9308 1.3068 9 8 5.5673 3.9149 0.5340 10 6 6.9573 3.5275 0.6945 11 6 7.8621 4.6783 0.2494 12 6 9.3270 4.2699 0.4180 13 6 10.2181 5.4036 -0.0198 14 1 9.7831 6.3233 -0.3824 15 6 11.5886 5.2664 0.0417 16 7 12.1182 4.1463 0.4828 17 14 12.6932 6.6714 -0.5017 18 1 12.9786 7.5538 0.6582 19 1 13.9675 6.1228 -1.0315 20 1 12.0119 7.4546 -1.5636 21 6 2.7703 3.4750 -0.7379 22 6 2.2716 2.0961 -1.1098 23 8 2.1215 1.6943 -2.2442 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8320 1.5530 1.9384 30 1 1.3644 2.5312 1.6441 31 1 7.1515 3.2965 1.7419 32 1 7.1623 2.6479 0.0843 33 1 7.6679 4.9090 -0.7980 34 1 7.6574 5.5582 0.8593 35 1 9.5215 4.0390 1.4653 36 1 9.5314 3.3902 -0.1921 37 1 13.0824 4.0496 0.5256 38 1 1.9756 4.2121 -0.8533 39 1 3.6337 3.7453 -1.3458 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914911036.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:51 Heat of formation + Delta-G solvation = -159.743881 kcal Electronic energy + Delta-G solvation = -20247.413551 eV Core-core repulsion = 16960.638284 eV Total energy + Delta-G solvation = -3286.775267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.19980 -40.84599 -38.13100 -37.30732 -35.95389 -35.02171 -33.66592 -30.88343 -29.09731 -28.75481 -25.99699 -24.68722 -23.88599 -22.17989 -21.50727 -20.46604 -19.00712 -18.59471 -18.02730 -17.78956 -17.48021 -16.53626 -16.49874 -16.26420 -15.70468 -15.08515 -14.78291 -14.55524 -14.46666 -14.18783 -14.07209 -13.79588 -13.62002 -13.17745 -13.00692 -12.83708 -12.76012 -12.63945 -12.51763 -12.34716 -12.08457 -12.02662 -11.76505 -11.42895 -11.39501 -11.21942 -10.95932 -10.57931 -9.81643 -8.22512 -6.34065 1.06195 1.40928 1.42878 1.43030 1.53590 1.58050 1.99069 2.41044 3.11602 3.15461 3.25965 3.52496 3.74316 3.98584 4.04155 4.06602 4.24125 4.28863 4.40360 4.45953 4.56986 4.61168 4.73341 4.78638 4.79716 4.81383 4.90049 4.94911 5.07541 5.25968 5.40627 5.50435 5.53570 5.63045 5.79623 6.03162 6.18322 6.62239 6.82279 7.03541 7.35703 8.89790 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043083 B = 0.002937 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.754930 B = 9531.927680 C = 9658.570926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.114 3.886 3 N -0.617 5.617 4 C 0.112 3.888 5 C -0.086 4.086 6 H 0.187 0.813 7 C 0.457 3.543 8 O -0.536 6.536 9 O -0.351 6.351 10 C 0.079 3.921 11 C -0.094 4.094 12 C 0.025 3.975 13 C -0.542 4.542 14 H 0.066 0.934 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.261 1.261 21 C -0.138 4.138 22 C 0.500 3.500 23 O -0.582 6.582 24 H 0.075 0.925 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.072 0.928 35 H -0.002 1.002 36 H -0.007 1.007 37 H 0.264 0.736 38 H 0.162 0.838 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.688 -1.783 3.953 26.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.007 4.007 3 N -0.350 5.350 4 C -0.009 4.009 5 C -0.104 4.104 6 H 0.204 0.796 7 C 0.301 3.699 8 O -0.426 6.426 9 O -0.268 6.268 10 C 0.005 3.995 11 C -0.131 4.131 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.084 0.916 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.185 1.185 21 C -0.177 4.177 22 C 0.288 3.712 23 O -0.463 6.463 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.151 0.849 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.016 0.984 36 H 0.011 0.989 37 H 0.073 0.927 38 H 0.179 0.821 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -25.493 -2.486 3.545 25.858 hybrid contribution 1.354 -0.108 -0.301 1.392 sum -24.139 -2.594 3.244 24.493 Atomic orbital electron populations 1.22068 0.93905 1.03350 1.02243 1.21497 0.95669 0.80443 1.03137 1.48497 1.64712 1.14396 1.07443 1.22364 1.00433 0.91264 0.86886 1.22220 0.84736 1.04112 0.99371 0.79629 1.24272 0.90702 0.81890 0.73061 1.90668 1.83368 1.25242 1.43309 1.86467 1.17591 1.45213 1.77488 1.23115 0.76322 0.98683 1.01384 1.21453 0.93387 0.96617 1.01656 1.18942 0.90836 0.95917 0.95539 1.21633 0.91889 1.01294 1.43216 0.91551 1.26022 1.00120 0.98636 0.95216 1.70100 1.12051 1.27520 1.47824 0.85388 0.77664 0.78750 0.78900 1.19552 1.20956 1.18545 1.22421 1.05352 0.95568 0.94407 1.21497 0.76441 0.88978 0.84234 1.90700 1.56025 1.76492 1.23087 0.90598 0.94097 0.89994 0.92424 0.88453 0.89128 0.84874 0.91495 0.92726 0.91679 0.90939 0.98365 0.98861 0.92691 0.82080 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 10.24 71.98 0.74 -1.17 16 2 C 0.11 1.90 6.65 86.38 0.57 2.47 16 3 N -0.62 -11.47 2.93 -818.01 -2.40 -13.86 16 4 C 0.11 1.32 6.68 86.83 0.58 1.90 16 5 C -0.09 -1.14 3.66 -10.48 -0.04 -1.18 16 6 H 0.19 0.78 8.14 -2.38 -0.02 0.76 16 7 C 0.46 11.63 7.19 71.23 0.51 12.14 16 8 O -0.54 -17.26 15.28 21.94 0.34 -16.93 16 9 O -0.35 -10.36 10.21 -51.42 -0.52 -10.89 16 10 C 0.08 2.81 5.47 71.98 0.39 3.21 16 11 C -0.09 -3.78 5.53 30.60 0.17 -3.61 16 12 C 0.02 1.30 4.97 29.85 0.15 1.45 16 13 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 14 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 15 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 16 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 17 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 21 C -0.14 -2.14 6.40 30.59 0.20 -1.94 16 22 C 0.50 11.95 8.02 87.90 0.71 12.65 16 23 O -0.58 -19.56 17.60 -3.04 -0.05 -19.61 16 24 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.04 0.65 8.14 -2.38 -0.02 0.64 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 1.23 7.93 -2.39 -0.02 1.21 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.30 7.02 -2.39 -0.02 1.28 16 30 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 2.40 8.13 -2.39 -0.02 2.38 16 32 H 0.05 2.07 8.13 -2.39 -0.02 2.05 16 33 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.16 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 1.93 7.89 -2.38 -0.02 1.92 16 Total: -1.00 -77.89 334.26 5.36 -72.52 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 1.02 Total: 3.59 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 4.67 Total: -4.03 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -2.11 Total: -70.53 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.24 Total: -47.43 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -77.89 5.36 -72.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914911036.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.221 kcal (2) G-P(sol) polarization free energy of solvation -77.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds