Wall clock time and date at job start Mon Mar 30 2020 01:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99706 * 2 1 4 4 O 1.20827 * 120.00022 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00011 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.30347 * 329.81423 * 5 3 2 7 7 C 1.54386 * 110.34403 * 207.52877 * 5 3 2 8 8 N 1.48143 * 104.61890 * 217.26095 * 7 5 3 9 9 C 1.34779 * 127.84077 * 219.58770 * 8 7 5 10 10 O 1.21275 * 120.00556 * 184.99960 * 9 8 7 11 11 C 1.50703 * 119.99486 * 4.99696 * 9 8 7 12 12 H 1.08998 * 109.47491 * 329.65932 * 11 9 8 13 13 C 1.52994 * 109.47136 * 89.66529 * 11 9 8 14 14 C 1.50706 * 109.46856 * 209.66595 * 11 9 8 15 15 H 1.07999 * 119.99914 * 359.97438 * 14 11 9 16 16 C 1.37875 * 119.99892 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00047 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99820 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47006 * 90.00132 * 18 16 14 20 20 H 1.48500 * 109.47002 * 209.99676 * 18 16 14 21 21 H 1.48491 * 109.47303 * 329.99878 * 18 16 14 22 22 C 1.48148 * 104.32401 * 39.58352 * 8 7 5 23 23 C 1.54292 * 110.34354 * 91.98938 * 5 3 2 24 24 H 1.09002 * 110.34094 * 237.74049 * 23 5 3 25 25 C 1.52997 * 110.34454 * 359.89543 * 23 5 3 26 26 H 1.09001 * 109.46905 * 60.01210 * 1 2 3 27 27 H 1.08991 * 109.47881 * 300.01009 * 1 2 3 28 28 H 1.09004 * 109.47019 * 180.02562 * 1 2 3 29 29 H 1.09003 * 110.40687 * 336.04580 * 7 5 3 30 30 H 1.09000 * 110.40662 * 98.47285 * 7 5 3 31 31 H 1.09002 * 109.47111 * 187.51964 * 13 11 9 32 32 H 1.09001 * 109.47169 * 307.52065 * 13 11 9 33 33 H 1.08996 * 109.47200 * 67.52287 * 13 11 9 34 34 H 0.96997 * 120.00028 * 179.97438 * 17 16 14 35 35 H 1.09003 * 110.40621 * 201.62988 * 22 8 7 36 36 H 1.08996 * 110.50313 * 79.25033 * 22 8 7 37 37 H 1.09001 * 109.46549 * 60.23243 * 25 23 5 38 38 H 1.08993 * 109.47459 * 180.23401 * 25 23 5 39 39 H 1.09001 * 109.46971 * 300.23908 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9901 0.4124 0.5150 7 6 4.0347 2.5851 0.6696 8 7 5.2142 3.0076 -0.1210 9 6 6.3635 3.5465 0.3323 10 8 7.2066 3.9256 -0.4527 11 6 6.6008 3.6779 1.8147 12 1 5.6474 3.8158 2.3245 13 6 7.2797 2.4101 2.3368 14 6 7.4877 4.8675 2.0779 15 1 7.8442 5.4680 1.2540 16 6 7.8449 5.1886 3.3703 17 7 7.4112 4.4570 4.3734 18 14 8.9449 6.6628 3.6964 19 1 8.1061 7.8726 3.8917 20 1 9.7518 6.4175 4.9186 21 1 9.8509 6.8702 2.5384 22 6 4.8440 2.7034 -1.5228 23 6 4.0999 1.3530 -1.4450 24 1 4.7872 0.5298 -1.6401 25 6 2.9401 1.3239 -2.4424 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 3.2509 3.3407 0.6160 30 1 4.3176 2.4025 1.7063 31 1 7.3308 2.4472 3.4250 32 1 6.7042 1.5369 2.0296 33 1 8.2878 2.3431 1.9279 34 1 7.6627 4.6827 5.2826 35 1 5.7375 2.6100 -2.1402 36 1 4.1872 3.4769 -1.9207 37 1 2.2848 2.1762 -2.2625 38 1 3.3327 1.3755 -3.4579 39 1 2.3763 0.3995 -2.3173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926610374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:12 Heat of formation + Delta-G solvation = -123.643695 kcal Electronic energy + Delta-G solvation = -21427.864951 eV Core-core repulsion = 18142.655106 eV Total energy + Delta-G solvation = -3285.209846 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.04812 -39.19449 -37.30975 -36.30548 -33.74086 -32.70776 -30.44500 -30.13643 -27.83260 -26.39401 -25.17651 -24.19633 -22.48436 -21.48145 -19.73449 -18.57976 -17.72064 -16.74130 -16.60694 -16.30304 -15.96820 -15.10492 -14.95702 -14.49001 -14.08502 -13.70450 -13.62274 -12.95408 -12.83735 -12.58647 -12.44512 -12.32620 -12.18450 -12.05994 -11.46415 -11.25436 -11.01527 -10.98926 -10.96434 -10.79237 -10.70943 -10.66527 -10.38961 -10.24502 -10.01523 -8.99586 -8.63586 -8.35850 -8.19422 -6.04283 -4.07279 2.07746 2.51156 3.33779 3.39440 3.45226 3.59781 3.66224 4.37020 4.40943 4.48058 4.67322 4.90092 4.91477 4.97638 5.10544 5.29134 5.30059 5.31512 5.34396 5.49253 5.67334 5.79260 5.87678 5.88853 6.04285 6.06755 6.16495 6.27207 6.62980 6.77460 6.84938 6.98890 7.46940 7.62834 7.74978 7.98285 8.11806 8.37985 8.97480 9.17075 9.57412 11.03751 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030100 B = 0.004645 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.006614 B = 6026.858008 C = 6508.619022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.479 3.521 4 O -0.502 6.502 5 C -0.099 4.099 6 H 0.114 0.886 7 C 0.116 3.884 8 N -0.633 5.633 9 C 0.546 3.454 10 O -0.543 6.543 11 C 0.035 3.965 12 H 0.046 0.954 13 C -0.125 4.125 14 C -0.502 4.502 15 H 0.068 0.932 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.106 3.894 23 C -0.089 4.089 24 H 0.094 0.906 25 C -0.159 4.159 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.010 0.990 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.128 -11.206 -8.467 19.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.322 3.678 4 O -0.389 6.389 5 C -0.119 4.119 6 H 0.132 0.868 7 C -0.008 4.008 8 N -0.370 5.370 9 C 0.338 3.662 10 O -0.418 6.418 11 C 0.014 3.986 12 H 0.063 0.937 13 C -0.183 4.183 14 C -0.540 4.540 15 H 0.086 0.914 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.018 4.018 23 C -0.109 4.109 24 H 0.112 0.888 25 C -0.217 4.217 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.029 0.971 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.737 -10.632 -8.643 18.708 hybrid contribution 0.176 0.683 0.262 0.752 sum -12.561 -9.949 -8.381 18.083 Atomic orbital electron populations 1.23259 0.76533 1.03568 1.02610 1.86539 1.23271 1.33568 1.84172 1.23381 0.91585 0.81325 0.71531 1.90671 1.66886 1.36233 1.45116 1.22147 0.87375 1.02523 0.99880 0.86790 1.22267 0.88960 0.92961 0.96644 1.49293 1.16165 1.64831 1.06679 1.21844 0.77594 0.73331 0.93385 1.90548 1.43932 1.48259 1.59063 1.18875 0.98602 0.96791 0.84333 0.93661 1.21664 0.98472 0.93752 1.04428 1.21045 1.29687 1.10408 0.92888 0.91355 1.24923 0.96194 0.96955 0.95930 1.69883 1.45518 1.38912 0.99060 0.86450 0.80581 0.82505 0.77700 1.20642 1.21192 1.19697 1.22279 0.99241 0.94293 0.85976 1.22073 0.97528 0.99650 0.91610 0.88767 1.22058 0.97722 1.02400 0.99497 0.91967 0.91788 0.88205 0.89604 0.88613 0.89173 0.97067 0.94373 0.92898 0.89879 0.91494 0.91682 0.91358 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.85 10.17 -39.26 -0.40 -4.25 16 3 C 0.48 5.98 4.89 36.00 0.18 6.16 16 4 O -0.50 -7.45 14.75 -18.75 -0.28 -7.73 16 5 C -0.10 -1.23 3.56 -90.37 -0.32 -1.55 16 6 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 7 C 0.12 1.82 6.23 -2.41 -0.02 1.80 16 8 N -0.63 -11.80 3.32 -169.31 -0.56 -12.36 16 9 C 0.55 12.89 6.95 -10.98 -0.08 12.81 16 10 O -0.54 -14.51 16.25 5.56 0.09 -14.42 16 11 C 0.04 0.89 2.12 -92.92 -0.20 0.69 16 12 H 0.05 1.16 6.87 -51.93 -0.36 0.80 16 13 C -0.12 -2.96 8.85 37.15 0.33 -2.63 16 14 C -0.50 -14.36 8.32 -34.44 -0.29 -14.64 16 15 H 0.07 2.06 7.13 -52.49 -0.37 1.68 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.10 11.41 55.43 0.63 -24.47 16 18 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.11 1.58 6.58 -2.41 -0.02 1.57 16 23 C -0.09 -1.04 3.65 -89.22 -0.33 -1.36 16 24 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 25 C -0.16 -1.58 7.95 37.16 0.30 -1.29 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.39 6.87 -51.93 -0.36 1.04 16 30 H 0.10 1.53 6.87 -51.93 -0.36 1.17 16 31 H 0.09 2.28 6.31 -51.93 -0.33 1.95 16 32 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 33 H 0.04 0.93 8.13 -51.93 -0.42 0.50 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 36 H 0.07 0.97 7.83 -51.93 -0.41 0.56 16 37 H 0.06 0.74 7.03 -51.93 -0.36 0.37 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.57 7.22 -51.93 -0.38 0.20 16 LS Contribution 319.17 15.07 4.81 4.81 Total: -1.00 -32.70 319.17 -6.04 -38.73 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -5.85 Total: -1.63 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 0.53 Total: 4.49 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.07 Total: -36.83 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.59 Total: -26.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.70 -6.04 -38.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926610374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.910 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds