Wall clock time and date at job start Mon Mar 30 2020 01:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99706 * 2 1 4 4 O 1.20827 * 120.00022 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00011 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.30347 * 329.81423 * 5 3 2 7 7 C 1.54386 * 110.34403 * 207.52877 * 5 3 2 8 8 N 1.48143 * 104.61890 * 217.26095 * 7 5 3 9 9 C 1.34779 * 127.84077 * 219.58770 * 8 7 5 10 10 O 1.21275 * 120.00556 * 184.99960 * 9 8 7 11 11 C 1.50703 * 119.99486 * 4.99696 * 9 8 7 12 12 H 1.08998 * 109.47491 * 329.65932 * 11 9 8 13 13 C 1.52994 * 109.47136 * 89.66529 * 11 9 8 14 14 C 1.50706 * 109.46856 * 209.66595 * 11 9 8 15 15 H 1.07999 * 119.99914 * 359.97438 * 14 11 9 16 16 C 1.37875 * 119.99892 * 180.02562 * 14 11 9 17 17 N 1.31516 * 120.00047 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99820 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47006 * 90.00132 * 18 16 14 20 20 H 1.48500 * 109.47002 * 209.99676 * 18 16 14 21 21 H 1.48491 * 109.47303 * 329.99878 * 18 16 14 22 22 C 1.48148 * 104.32401 * 39.58352 * 8 7 5 23 23 C 1.54292 * 110.34354 * 91.98938 * 5 3 2 24 24 H 1.09002 * 110.34094 * 237.74049 * 23 5 3 25 25 C 1.52997 * 110.34454 * 359.89543 * 23 5 3 26 26 H 1.09001 * 109.46905 * 60.01210 * 1 2 3 27 27 H 1.08991 * 109.47881 * 300.01009 * 1 2 3 28 28 H 1.09004 * 109.47019 * 180.02562 * 1 2 3 29 29 H 1.09003 * 110.40687 * 336.04580 * 7 5 3 30 30 H 1.09000 * 110.40662 * 98.47285 * 7 5 3 31 31 H 1.09002 * 109.47111 * 187.51964 * 13 11 9 32 32 H 1.09001 * 109.47169 * 307.52065 * 13 11 9 33 33 H 1.08996 * 109.47200 * 67.52287 * 13 11 9 34 34 H 0.96997 * 120.00028 * 179.97438 * 17 16 14 35 35 H 1.09003 * 110.40621 * 201.62988 * 22 8 7 36 36 H 1.08996 * 110.50313 * 79.25033 * 22 8 7 37 37 H 1.09001 * 109.46549 * 60.23243 * 25 23 5 38 38 H 1.08993 * 109.47459 * 180.23401 * 25 23 5 39 39 H 1.09001 * 109.46971 * 300.23908 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9901 0.4124 0.5150 7 6 4.0347 2.5851 0.6696 8 7 5.2142 3.0076 -0.1210 9 6 6.3635 3.5465 0.3323 10 8 7.2066 3.9256 -0.4527 11 6 6.6008 3.6779 1.8147 12 1 5.6474 3.8158 2.3245 13 6 7.2797 2.4101 2.3368 14 6 7.4877 4.8675 2.0779 15 1 7.8442 5.4680 1.2540 16 6 7.8449 5.1886 3.3703 17 7 7.4112 4.4570 4.3734 18 14 8.9449 6.6628 3.6964 19 1 8.1061 7.8726 3.8917 20 1 9.7518 6.4175 4.9186 21 1 9.8509 6.8702 2.5384 22 6 4.8440 2.7034 -1.5228 23 6 4.0999 1.3530 -1.4450 24 1 4.7872 0.5298 -1.6401 25 6 2.9401 1.3239 -2.4424 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 3.2509 3.3407 0.6160 30 1 4.3176 2.4025 1.7063 31 1 7.3308 2.4472 3.4250 32 1 6.7042 1.5369 2.0296 33 1 8.2878 2.3431 1.9279 34 1 7.6627 4.6827 5.2826 35 1 5.7375 2.6100 -2.1402 36 1 4.1872 3.4769 -1.9207 37 1 2.2848 2.1762 -2.2625 38 1 3.3327 1.3755 -3.4579 39 1 2.3763 0.3995 -2.3173 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926610374.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:12 Heat of formation + Delta-G solvation = -144.157514 kcal Electronic energy + Delta-G solvation = -21428.754497 eV Core-core repulsion = 18142.655106 eV Total energy + Delta-G solvation = -3286.099392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.08981 -40.66972 -38.70353 -37.33900 -35.79823 -34.06958 -32.37716 -31.27145 -28.61350 -27.63319 -27.27886 -25.42987 -23.99428 -22.79595 -20.77326 -20.15970 -18.68367 -18.40910 -17.98369 -17.65478 -17.23001 -16.87103 -16.25087 -16.00595 -15.59222 -14.93474 -14.66478 -14.49896 -14.26310 -14.05490 -13.61404 -13.45715 -13.31413 -13.22183 -12.94791 -12.94413 -12.66237 -12.62936 -12.39408 -12.23185 -12.08734 -11.96828 -11.86379 -11.70648 -11.37149 -11.07841 -10.63673 -10.36849 -9.75111 -8.17664 -6.28212 1.10308 1.40295 1.41107 1.52674 1.58310 1.82195 2.15306 2.44851 3.12527 3.28562 3.35669 3.72843 3.98653 4.08925 4.12500 4.25061 4.35689 4.37758 4.39552 4.58032 4.60477 4.72790 4.74020 4.76420 4.81924 4.90506 4.92459 5.01376 5.08049 5.19034 5.28288 5.39402 5.47491 5.69899 5.89849 6.15763 6.57114 6.70776 6.77175 7.33362 7.42597 8.88875 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030100 B = 0.004645 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.006614 B = 6026.858008 C = 6508.619022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.487 3.513 4 O -0.530 6.530 5 C -0.093 4.093 6 H 0.137 0.863 7 C 0.112 3.888 8 N -0.631 5.631 9 C 0.545 3.455 10 O -0.585 6.585 11 C 0.031 3.969 12 H 0.039 0.961 13 C -0.111 4.111 14 C -0.532 4.532 15 H 0.042 0.958 16 C 0.024 3.976 17 N -0.908 5.908 18 Si 0.956 3.044 19 H -0.272 1.272 20 H -0.273 1.273 21 H -0.279 1.279 22 C 0.100 3.900 23 C -0.077 4.077 24 H 0.116 0.884 25 C -0.153 4.153 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.133 0.867 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.021 0.979 34 H 0.266 0.734 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.245 -12.834 -8.827 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.330 3.670 4 O -0.420 6.420 5 C -0.113 4.113 6 H 0.155 0.845 7 C -0.012 4.012 8 N -0.365 5.365 9 C 0.337 3.663 10 O -0.465 6.465 11 C 0.010 3.990 12 H 0.057 0.943 13 C -0.169 4.169 14 C -0.571 4.571 15 H 0.061 0.939 16 C -0.176 4.176 17 N -0.547 5.547 18 Si 0.781 3.219 19 H -0.198 1.198 20 H -0.197 1.197 21 H -0.204 1.204 22 C -0.023 4.023 23 C -0.097 4.097 24 H 0.134 0.866 25 C -0.210 4.210 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.151 0.849 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.917 -12.308 -9.002 20.645 hybrid contribution 0.398 1.153 0.366 1.273 sum -13.519 -11.155 -8.635 19.539 Atomic orbital electron populations 1.23576 0.74715 1.05769 1.02596 1.86520 1.24960 1.32182 1.83569 1.23245 0.91409 0.81465 0.70844 1.90672 1.67451 1.37297 1.46534 1.22072 0.87841 1.01131 1.00248 0.84521 1.22354 0.87495 0.94764 0.96540 1.49093 1.15320 1.63004 1.09081 1.21361 0.78691 0.73742 0.92470 1.90514 1.45910 1.50449 1.59592 1.18796 0.97713 0.96487 0.85996 0.94345 1.21468 0.97981 0.94491 1.03001 1.21184 1.31246 1.11920 0.92703 0.93930 1.25573 0.97168 0.99307 0.95561 1.69950 1.45743 1.39681 0.99325 0.85585 0.78978 0.79732 0.77556 1.19788 1.19741 1.20440 1.22544 0.99516 0.96613 0.83585 1.22060 0.98129 0.97920 0.91565 0.86609 1.22013 0.96766 1.02391 0.99843 0.91699 0.92189 0.84924 0.90308 0.89093 0.90846 0.93589 0.95944 0.92428 0.90433 0.91128 0.93215 0.89662 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.57 10.17 -51.43 -0.52 -7.09 16 3 C 0.49 11.09 4.89 71.24 0.35 11.44 16 4 O -0.53 -15.09 14.75 21.96 0.32 -14.77 16 5 C -0.09 -2.09 3.56 -10.63 -0.04 -2.13 16 6 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 7 C 0.11 3.42 6.23 86.53 0.54 3.96 16 8 N -0.63 -23.39 3.32 -807.96 -2.68 -26.07 16 9 C 0.55 26.26 6.95 87.66 0.61 26.87 16 10 O -0.59 -32.27 16.25 -3.01 -0.05 -32.32 16 11 C 0.03 1.61 2.12 -12.29 -0.03 1.59 16 12 H 0.04 2.01 6.87 -2.39 -0.02 2.00 16 13 C -0.11 -5.29 8.85 71.98 0.64 -4.65 16 14 C -0.53 -31.33 8.32 25.60 0.21 -31.11 16 15 H 0.04 2.67 7.13 -2.91 -0.02 2.65 16 16 C 0.02 1.33 5.30 84.65 0.45 1.78 16 17 N -0.91 -51.08 11.41 21.45 0.24 -50.83 16 18 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 22 C 0.10 2.89 6.58 86.53 0.57 3.46 16 23 C -0.08 -1.60 3.65 -9.89 -0.04 -1.63 16 24 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 25 C -0.15 -2.59 7.95 71.98 0.57 -2.01 16 26 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 27 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 28 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.08 2.56 6.87 -2.39 -0.02 2.54 16 30 H 0.09 2.87 6.87 -2.39 -0.02 2.85 16 31 H 0.07 3.73 6.31 -2.39 -0.02 3.71 16 32 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 33 H 0.02 1.08 8.13 -2.39 -0.02 1.06 16 34 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.08 2.35 7.93 -2.39 -0.02 2.33 16 36 H 0.07 2.00 7.83 -2.39 -0.02 1.98 16 37 H 0.05 1.02 7.03 -2.39 -0.02 1.00 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.11 7.22 -2.39 -0.02 1.10 16 Total: -1.00 -71.79 319.17 5.42 -66.37 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.04 Total: 8.49 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.03 Total: 9.10 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -2.43 Total: -76.90 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -0.25 Total: -54.18 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.79 5.42 -66.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926610374.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.788 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds