Wall clock time and date at job start Mon Mar 30 2020 01:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00272 * 2 1 4 4 O 1.20824 * 119.99452 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46728 * 180.02562 * 5 3 2 7 7 C 1.53789 * 113.61098 * 175.00043 * 6 5 3 8 8 C 1.53790 * 87.08008 * 139.97933 * 7 6 5 9 9 N 1.46496 * 113.61245 * 89.11308 * 8 7 6 10 10 C 1.34774 * 119.99544 * 156.53002 * 9 8 7 11 11 O 1.21279 * 120.00472 * 0.02562 * 10 9 8 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 14 14 C 1.53002 * 109.46925 * 300.00031 * 12 10 9 15 15 C 1.50698 * 109.47294 * 180.02562 * 12 10 9 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 12 10 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99944 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47418 * 89.99710 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99770 * 19 17 15 22 22 H 1.48498 * 109.46997 * 329.99580 * 19 17 15 23 23 C 1.53787 * 87.16949 * 334.52734 * 8 7 6 24 24 H 1.09003 * 109.47343 * 299.99706 * 1 2 3 25 25 H 1.08999 * 109.47141 * 59.99467 * 1 2 3 26 26 H 1.09005 * 109.47474 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47201 * 60.00603 * 5 3 2 28 28 H 1.08996 * 109.47345 * 299.99952 * 5 3 2 29 29 H 1.09001 * 112.85229 * 43.80425 * 6 5 3 30 30 H 1.09001 * 113.61434 * 25.43261 * 7 6 5 31 31 H 1.08993 * 113.61465 * 254.52682 * 7 6 5 32 32 H 1.09000 * 113.61193 * 219.93836 * 8 7 6 33 33 H 0.96994 * 120.00700 * 336.53122 * 9 8 7 34 34 H 1.08992 * 109.47060 * 179.97438 * 14 12 10 35 35 H 1.09004 * 109.46930 * 299.99901 * 14 12 10 36 36 H 1.09004 * 109.47059 * 59.99503 * 14 12 10 37 37 H 0.96997 * 119.99752 * 180.02562 * 18 17 15 38 38 H 1.08998 * 113.61144 * 140.03213 * 23 8 7 39 39 H 1.09005 * 113.60959 * 270.92420 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0001 2.7420 0.0002 7 6 5.5210 2.9346 0.1225 8 6 5.3811 4.0676 -0.9080 9 7 5.1158 5.3773 -0.3076 10 6 5.4293 6.5026 -0.9798 11 8 5.9307 6.4310 -2.0818 12 6 5.1569 7.8500 -0.3621 13 1 5.7094 7.9393 0.5733 14 6 3.6588 7.9904 -0.0847 15 6 5.5955 8.9356 -1.3109 16 1 6.0286 8.6758 -2.2656 17 6 5.4448 10.2603 -0.9597 18 7 4.9179 10.5766 0.2030 19 14 5.9891 11.6059 -2.1355 20 1 4.8591 11.9712 -3.0271 21 1 6.4135 12.7991 -1.3600 22 1 7.1276 11.1171 -2.9543 23 6 4.1156 3.3522 -1.4096 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9557 0.7809 -0.8908 28 1 3.9564 0.7805 0.8891 29 1 3.4252 3.3530 0.6961 30 1 6.0993 2.0844 -0.2392 31 1 5.8400 3.2767 1.1069 32 1 6.1876 4.0934 -1.6408 33 1 4.7145 5.4347 0.5735 34 1 3.4619 8.9646 0.3624 35 1 3.1062 7.9011 -1.0201 36 1 3.3412 7.2051 0.6013 37 1 4.8116 11.5086 0.4498 38 1 3.3009 4.0312 -1.6612 39 1 4.3104 2.6159 -2.1894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927928822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:54 Heat of formation + Delta-G solvation = -115.218778 kcal Electronic energy + Delta-G solvation = -20526.966501 eV Core-core repulsion = 17242.121987 eV Total energy + Delta-G solvation = -3284.844514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.78587 -39.61453 -37.81118 -36.56910 -33.67767 -32.97285 -30.87047 -29.84784 -27.67778 -25.67448 -25.08444 -23.89429 -22.40342 -20.92794 -19.69654 -18.88682 -17.72367 -16.89402 -16.71606 -16.24559 -15.96532 -15.46373 -14.70352 -14.44353 -14.20786 -13.95977 -13.79115 -13.35691 -12.87193 -12.63703 -12.42830 -12.36624 -12.23190 -11.74861 -11.41793 -11.12061 -11.03685 -10.97306 -10.74009 -10.64319 -10.62520 -10.36327 -10.20560 -10.16421 -9.90297 -8.92528 -8.56592 -8.38159 -8.27087 -5.98949 -4.01862 2.04157 2.50122 3.36796 3.42220 3.49146 3.74923 3.90179 4.36015 4.47313 4.50885 4.68860 4.76154 4.83874 4.91293 5.00737 5.18150 5.28100 5.30821 5.34548 5.38760 5.67030 5.73940 5.89303 6.09855 6.15642 6.22390 6.24758 6.47247 6.68609 6.89551 6.98945 7.20885 7.53350 7.56775 7.81153 8.03992 8.20639 8.50999 9.07232 9.30280 9.63595 11.08734 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034587 B = 0.003522 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.364034 B = 7949.206297 C = 8351.351650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.456 3.544 4 O -0.499 6.499 5 C -0.102 4.102 6 C -0.103 4.103 7 C -0.141 4.141 8 C 0.125 3.875 9 N -0.729 5.729 10 C 0.522 3.478 11 O -0.546 6.546 12 C 0.029 3.971 13 H 0.052 0.948 14 C -0.132 4.132 15 C -0.500 4.500 16 H 0.074 0.926 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.900 3.100 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C -0.149 4.149 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.396 0.604 34 H 0.092 0.908 35 H 0.030 0.970 36 H 0.012 0.988 37 H 0.260 0.740 38 H 0.075 0.925 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 -21.698 3.336 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.299 3.701 4 O -0.385 6.385 5 C -0.140 4.140 6 C -0.121 4.121 7 C -0.179 4.179 8 C 0.018 3.982 9 N -0.382 5.382 10 C 0.312 3.688 11 O -0.421 6.421 12 C 0.008 3.992 13 H 0.070 0.930 14 C -0.190 4.190 15 C -0.538 4.538 16 H 0.092 0.908 17 C -0.143 4.143 18 N -0.537 5.537 19 Si 0.728 3.272 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.188 4.188 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.230 0.770 34 H 0.111 0.889 35 H 0.050 0.950 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.955 -21.255 2.621 21.982 hybrid contribution -0.334 0.708 -0.100 0.789 sum -5.289 -20.547 2.521 21.367 Atomic orbital electron populations 1.23245 0.76481 1.03503 1.02658 1.86504 1.23408 1.33937 1.84416 1.23961 0.92459 0.81232 0.72439 1.90711 1.67151 1.36235 1.44411 1.21474 0.87068 0.99740 1.05682 1.22573 0.96570 0.93162 0.99802 1.23383 0.95066 0.98969 1.00498 1.21589 0.97616 0.83111 0.95844 1.46006 1.66062 1.04552 1.21536 1.21991 0.75054 0.86451 0.85320 1.90519 1.43248 1.87579 1.20803 1.18874 0.95268 0.87400 0.97649 0.93022 1.21738 0.96110 1.02384 0.98760 1.21157 1.39825 0.89492 1.03342 0.90796 1.24954 0.95255 0.98693 0.95401 1.69877 1.45114 1.17909 1.20791 0.86454 0.79101 0.80901 0.80773 1.20697 1.21326 1.19753 1.23566 0.99758 0.99971 0.95517 0.91907 0.91886 0.88249 0.87533 0.87577 0.87982 0.88924 0.90558 0.88450 0.76990 0.88892 0.95031 0.96903 0.93010 0.90657 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.37 -3.55 10.56 -39.25 -0.41 -3.96 16 3 C 0.46 5.01 7.96 36.00 0.29 5.29 16 4 O -0.50 -7.23 15.51 -18.75 -0.29 -7.52 16 5 C -0.10 -0.84 5.65 -27.88 -0.16 -0.99 16 6 C -0.10 -1.09 3.04 -89.66 -0.27 -1.36 16 7 C -0.14 -1.41 7.38 -25.91 -0.19 -1.60 16 8 C 0.13 1.82 4.30 -67.11 -0.29 1.53 16 9 N -0.73 -12.83 5.16 -53.01 -0.27 -13.11 16 10 C 0.52 12.11 7.15 -10.98 -0.08 12.03 16 11 O -0.55 -14.46 15.08 5.56 0.08 -14.38 16 12 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 13 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -3.13 8.86 37.16 0.33 -2.80 16 15 C -0.50 -14.46 8.37 -34.44 -0.29 -14.75 16 16 H 0.07 2.26 6.75 -52.48 -0.35 1.90 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.90 -25.62 11.32 55.43 0.63 -24.99 16 19 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 C -0.15 -1.94 7.45 -25.78 -0.19 -2.14 16 24 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 25 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.11 0.70 7.85 -51.93 -0.41 0.29 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.10 1.24 7.68 -51.93 -0.40 0.84 16 30 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.58 7.50 -51.93 -0.39 1.19 16 33 H 0.40 6.17 8.12 -40.82 -0.33 5.84 16 34 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.01 0.25 7.56 -51.93 -0.39 -0.15 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 0.93 7.90 -51.93 -0.41 0.52 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -33.94 328.11 -6.41 -40.35 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.94 Total: 2.95 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -0.13 Total: -1.44 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.35 Total: -38.10 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.62 Total: -25.86 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.94 -6.41 -40.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927928822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.871 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds