Wall clock time and date at job start Mon Mar 30 2020 01:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00272 * 2 1 4 4 O 1.20824 * 119.99452 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99997 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46728 * 180.02562 * 5 3 2 7 7 C 1.53789 * 113.61098 * 175.00043 * 6 5 3 8 8 C 1.53790 * 87.08008 * 139.97933 * 7 6 5 9 9 N 1.46496 * 113.61245 * 89.11308 * 8 7 6 10 10 C 1.34774 * 119.99544 * 156.53002 * 9 8 7 11 11 O 1.21279 * 120.00472 * 0.02562 * 10 9 8 12 12 C 1.50706 * 120.00020 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.47318 * 59.99264 * 12 10 9 14 14 C 1.53002 * 109.46925 * 300.00031 * 12 10 9 15 15 C 1.50698 * 109.47294 * 180.02562 * 12 10 9 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 12 10 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99944 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47418 * 89.99710 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99770 * 19 17 15 22 22 H 1.48498 * 109.46997 * 329.99580 * 19 17 15 23 23 C 1.53787 * 87.16949 * 334.52734 * 8 7 6 24 24 H 1.09003 * 109.47343 * 299.99706 * 1 2 3 25 25 H 1.08999 * 109.47141 * 59.99467 * 1 2 3 26 26 H 1.09005 * 109.47474 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47201 * 60.00603 * 5 3 2 28 28 H 1.08996 * 109.47345 * 299.99952 * 5 3 2 29 29 H 1.09001 * 112.85229 * 43.80425 * 6 5 3 30 30 H 1.09001 * 113.61434 * 25.43261 * 7 6 5 31 31 H 1.08993 * 113.61465 * 254.52682 * 7 6 5 32 32 H 1.09000 * 113.61193 * 219.93836 * 8 7 6 33 33 H 0.96994 * 120.00700 * 336.53122 * 9 8 7 34 34 H 1.08992 * 109.47060 * 179.97438 * 14 12 10 35 35 H 1.09004 * 109.46930 * 299.99901 * 14 12 10 36 36 H 1.09004 * 109.47059 * 59.99503 * 14 12 10 37 37 H 0.96997 * 119.99752 * 180.02562 * 18 17 15 38 38 H 1.08998 * 113.61144 * 140.03213 * 23 8 7 39 39 H 1.09005 * 113.60959 * 270.92420 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0001 2.7420 0.0002 7 6 5.5210 2.9346 0.1225 8 6 5.3811 4.0676 -0.9080 9 7 5.1158 5.3773 -0.3076 10 6 5.4293 6.5026 -0.9798 11 8 5.9307 6.4310 -2.0818 12 6 5.1569 7.8500 -0.3621 13 1 5.7094 7.9393 0.5733 14 6 3.6588 7.9904 -0.0847 15 6 5.5955 8.9356 -1.3109 16 1 6.0286 8.6758 -2.2656 17 6 5.4448 10.2603 -0.9597 18 7 4.9179 10.5766 0.2030 19 14 5.9891 11.6059 -2.1355 20 1 4.8591 11.9712 -3.0271 21 1 6.4135 12.7991 -1.3600 22 1 7.1276 11.1171 -2.9543 23 6 4.1156 3.3522 -1.4096 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.9557 0.7809 -0.8908 28 1 3.9564 0.7805 0.8891 29 1 3.4252 3.3530 0.6961 30 1 6.0993 2.0844 -0.2392 31 1 5.8400 3.2767 1.1069 32 1 6.1876 4.0934 -1.6408 33 1 4.7145 5.4347 0.5735 34 1 3.4619 8.9646 0.3624 35 1 3.1062 7.9011 -1.0201 36 1 3.3412 7.2051 0.6013 37 1 4.8116 11.5086 0.4498 38 1 3.3009 4.0312 -1.6612 39 1 4.3104 2.6159 -2.1894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927928822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:53 Heat of formation + Delta-G solvation = -137.989064 kcal Electronic energy + Delta-G solvation = -20527.953895 eV Core-core repulsion = 17242.121987 eV Total energy + Delta-G solvation = -3285.831908 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66881 -40.90964 -39.27239 -37.43810 -35.77339 -34.45040 -32.50829 -31.16554 -28.36134 -27.22121 -26.60819 -25.23684 -23.92144 -21.79577 -21.33719 -20.07651 -18.55474 -18.30885 -17.90954 -17.54840 -17.44225 -16.87906 -16.36712 -15.87983 -15.52706 -15.19512 -14.80427 -14.61824 -14.37285 -14.07876 -13.66254 -13.39721 -13.26264 -12.98890 -12.93487 -12.71459 -12.61513 -12.55774 -12.23378 -12.05119 -11.93153 -11.78473 -11.65426 -11.31438 -11.13816 -11.04370 -10.61060 -10.30366 -9.86473 -8.15949 -6.26582 1.24128 1.39930 1.40451 1.52666 1.82659 1.92398 2.35157 2.53661 3.13394 3.52979 3.57986 3.83653 3.96519 4.00937 4.31440 4.32030 4.33163 4.46868 4.58503 4.68521 4.71833 4.72085 4.82650 4.87887 4.91753 4.96272 5.01712 5.13555 5.20920 5.34284 5.47177 5.48512 5.71051 5.80331 5.93841 6.20256 6.74498 6.78310 6.86700 7.39274 7.56429 8.90102 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034587 B = 0.003522 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.364034 B = 7949.206297 C = 8351.351650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.455 3.545 4 O -0.545 6.545 5 C -0.095 4.095 6 C -0.094 4.094 7 C -0.113 4.113 8 C 0.100 3.900 9 N -0.709 5.709 10 C 0.522 3.478 11 O -0.587 6.587 12 C 0.024 3.976 13 H 0.043 0.957 14 C -0.118 4.118 15 C -0.530 4.530 16 H 0.048 0.952 17 C 0.018 3.982 18 N -0.912 5.912 19 Si 0.957 3.043 20 H -0.275 1.275 21 H -0.273 1.273 22 H -0.277 1.277 23 C -0.150 4.150 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.084 0.916 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.407 0.593 34 H 0.071 0.929 35 H 0.018 0.982 36 H 0.048 0.952 37 H 0.265 0.735 38 H 0.038 0.962 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 -23.916 4.125 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.300 3.700 4 O -0.434 6.434 5 C -0.132 4.132 6 C -0.112 4.112 7 C -0.150 4.150 8 C -0.006 4.006 9 N -0.361 5.361 10 C 0.312 3.688 11 O -0.467 6.467 12 C 0.003 3.997 13 H 0.060 0.940 14 C -0.176 4.176 15 C -0.568 4.568 16 H 0.067 0.933 17 C -0.181 4.181 18 N -0.551 5.551 19 Si 0.783 3.217 20 H -0.201 1.201 21 H -0.198 1.198 22 H -0.202 1.202 23 C -0.189 4.189 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.158 0.842 29 H 0.102 0.898 30 H 0.146 0.854 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.243 0.757 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.726 -23.531 3.458 24.249 hybrid contribution -0.466 1.328 -0.332 1.446 sum -5.192 -22.203 3.126 23.015 Atomic orbital electron populations 1.23479 0.75446 1.05496 1.02121 1.86502 1.24510 1.33229 1.83909 1.24569 0.93578 0.80846 0.71032 1.90705 1.68326 1.37683 1.46724 1.21547 0.85057 0.98105 1.08506 1.22408 0.96959 0.94654 0.97186 1.23321 0.94876 0.97449 0.99402 1.21967 0.98136 0.82662 0.97790 1.45723 1.64306 1.04678 1.21411 1.21522 0.75159 0.87257 0.84894 1.90490 1.45516 1.88207 1.22498 1.18803 0.95923 0.88407 0.96583 0.93959 1.21546 0.94953 1.02437 0.98691 1.21301 1.40969 0.91288 1.03270 0.93338 1.25627 0.95095 1.00410 0.96948 1.69954 1.44978 1.18591 1.21615 0.85571 0.78584 0.78585 0.79007 1.20073 1.19800 1.20246 1.23606 0.97372 0.99864 0.98029 0.92313 0.92651 0.85008 0.84920 0.84219 0.89806 0.85362 0.89551 0.90324 0.75651 0.90987 0.96263 0.93348 0.92575 0.94280 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.37 -6.24 10.56 -51.39 -0.54 -6.78 16 3 C 0.45 9.07 7.96 71.23 0.57 9.64 16 4 O -0.54 -15.57 15.51 21.97 0.34 -15.23 16 5 C -0.10 -1.19 5.65 29.85 0.17 -1.02 16 6 C -0.09 -1.74 3.04 -10.17 -0.03 -1.77 16 7 C -0.11 -1.86 7.38 31.13 0.23 -1.63 16 8 C 0.10 2.80 4.30 45.52 0.20 3.00 16 9 N -0.71 -24.91 5.16 -440.02 -2.27 -27.17 16 10 C 0.52 24.87 7.15 87.66 0.63 25.50 16 11 O -0.59 -32.33 15.08 -3.02 -0.05 -32.37 16 12 C 0.02 1.25 2.64 -12.28 -0.03 1.22 16 13 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 14 C -0.12 -5.69 8.86 71.98 0.64 -5.06 16 15 C -0.53 -31.65 8.37 25.60 0.21 -31.43 16 16 H 0.05 3.09 6.75 -2.91 -0.02 3.07 16 17 C 0.02 1.04 5.30 84.65 0.45 1.49 16 18 N -0.91 -52.42 11.32 21.45 0.24 -52.18 16 19 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 C -0.15 -3.74 7.45 31.21 0.23 -3.51 16 24 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 25 H 0.05 0.82 8.13 -2.39 -0.02 0.80 16 26 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.13 1.06 7.85 -2.39 -0.02 1.04 16 28 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.91 7.68 -2.39 -0.02 1.89 16 30 H 0.13 1.31 8.10 -2.39 -0.02 1.29 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 2.53 7.50 -2.39 -0.02 2.51 16 33 H 0.41 12.36 8.12 -92.71 -0.75 11.61 16 34 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 35 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.05 1.92 7.56 -2.39 -0.02 1.90 16 37 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.11 2.15 7.90 -2.38 -0.02 2.13 16 Total: -1.00 -77.02 328.11 4.50 -72.52 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.30 Total: 15.25 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 4.45 Total: -2.00 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.03 Total: -79.35 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -0.25 Total: -54.38 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -77.02 4.50 -72.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927928822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.468 kcal (2) G-P(sol) polarization free energy of solvation -77.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds