Wall clock time and date at job start Mon Mar 30 2020 01:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47165 * 2 1 4 4 O 1.42900 * 109.46981 * 239.99528 * 2 1 3 5 5 C 1.53001 * 109.46753 * 119.99802 * 2 1 3 6 6 H 1.09000 * 109.47123 * 60.00172 * 5 2 1 7 7 O 1.42903 * 109.47479 * 300.00258 * 5 2 1 8 8 C 1.53004 * 109.47118 * 179.97438 * 5 2 1 9 9 N 1.46900 * 109.46853 * 185.00307 * 8 5 2 10 10 C 1.46907 * 110.99310 * 190.00204 * 9 8 5 11 11 C 1.50701 * 109.47463 * 75.73728 * 10 9 8 12 12 H 1.08004 * 119.99668 * 5.04962 * 11 10 9 13 13 C 1.37872 * 119.99785 * 185.05897 * 11 10 9 14 14 N 1.31512 * 120.00552 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99664 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46951 * 89.99879 * 15 13 11 17 17 H 1.48496 * 109.47481 * 209.99988 * 15 13 11 18 18 H 1.48504 * 109.47212 * 329.99906 * 15 13 11 19 19 C 1.46896 * 111.00220 * 66.04669 * 9 8 5 20 20 C 1.50703 * 109.46741 * 195.89017 * 19 9 8 21 21 C 1.34515 * 125.79029 * 89.71806 * 20 19 9 22 22 C 1.41380 * 106.84195 * 179.88672 * 21 20 19 23 23 C 1.34515 * 106.84122 * 0.37258 * 22 21 20 24 24 O 1.34305 * 125.79000 * 270.02236 * 20 19 9 25 25 H 1.08998 * 109.47583 * 300.00400 * 1 2 3 26 26 H 1.09005 * 109.46754 * 60.00297 * 1 2 3 27 27 H 1.09000 * 109.47165 * 179.97438 * 1 2 3 28 28 H 0.96693 * 114.00271 * 300.00260 * 4 2 1 29 29 H 0.96706 * 113.99455 * 300.00423 * 7 5 2 30 30 H 1.08996 * 109.46559 * 64.99887 * 8 5 2 31 31 H 1.09005 * 109.46711 * 305.00095 * 8 5 2 32 32 H 1.09008 * 109.46734 * 195.73594 * 10 9 8 33 33 H 1.08998 * 109.47277 * 315.73061 * 10 9 8 34 34 H 0.96995 * 120.00195 * 179.97438 * 14 13 11 35 35 H 1.08991 * 109.47262 * 315.89107 * 19 9 8 36 36 H 1.09000 * 109.46942 * 75.89476 * 19 9 8 37 37 H 1.08002 * 126.57472 * 0.02634 * 21 20 19 38 38 H 1.07996 * 126.58033 * 180.16611 * 22 21 20 39 39 H 1.08002 * 125.79252 * 179.75013 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 1.6766 -1.7489 1.2493 7 8 1.5635 -0.0476 2.4161 8 6 3.5700 -0.7218 1.2491 9 7 4.0594 -1.5163 2.3836 10 6 5.5084 -1.3481 2.5577 11 6 5.7866 -0.0071 3.1866 12 1 4.9673 0.6193 3.5071 13 6 7.0870 0.4199 3.3526 14 7 8.0846 -0.3430 2.9626 15 14 7.4317 2.0824 4.1315 16 1 7.5586 1.9231 5.6025 17 1 8.6965 2.6337 3.5824 18 1 6.3140 3.0122 3.8289 19 6 3.7094 -2.9339 2.2236 20 6 3.8673 -3.6424 3.5443 21 6 2.9133 -3.7792 4.4827 22 6 3.4887 -4.5081 5.5487 23 6 4.7624 -4.7661 5.2016 24 8 4.9862 -4.2394 3.9865 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 -1.5952 -1.2328 29 1 1.8489 0.8740 2.4822 30 1 3.9336 0.3018 1.3384 31 1 3.9329 -1.1565 0.3176 32 1 5.8909 -2.1387 3.2035 33 1 5.9999 -1.4029 1.5864 34 1 8.9994 -0.0424 3.0791 35 1 2.6758 -3.0173 1.8879 36 1 4.3691 -3.3900 1.4855 37 1 1.9012 -3.4058 4.4307 38 1 3.0004 -4.7989 6.4670 39 1 5.4831 -5.3051 5.7987 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929774496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:07 Heat of formation + Delta-G solvation = -109.716804 kcal Electronic energy + Delta-G solvation = -21393.778473 eV Core-core repulsion = 18109.172543 eV Total energy + Delta-G solvation = -3284.605930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.36502 -40.04904 -37.92579 -36.62505 -34.75647 -33.80395 -31.86278 -31.52199 -30.08848 -28.28390 -26.14869 -24.60106 -22.63477 -22.54234 -22.22537 -21.05606 -18.62375 -18.25950 -18.07166 -17.35421 -17.17799 -16.70366 -16.54787 -15.83494 -15.73312 -15.24103 -15.15215 -14.40259 -14.35068 -13.77491 -13.60072 -13.58756 -13.41921 -13.31298 -13.09878 -12.83685 -12.72795 -12.68671 -12.55548 -12.30745 -11.99697 -11.68421 -11.54333 -11.23793 -10.72577 -10.63695 -10.34509 -9.32596 -9.02156 -8.19457 -6.30036 0.89811 1.38763 1.40765 1.51413 1.81429 2.26435 2.39250 3.09123 3.12417 3.44960 3.76540 3.81200 3.90667 4.03016 4.09454 4.21610 4.25769 4.37549 4.42881 4.50101 4.53058 4.82726 4.91596 4.95828 4.99211 5.10017 5.16306 5.20196 5.30216 5.30384 5.33327 5.64664 5.75251 6.05647 6.27299 6.38658 6.51892 6.79452 6.85921 6.93623 7.39215 8.91039 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.008142 C = 0.005237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.232408 B = 3438.244689 C = 5345.049497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.078 3.922 3 H 0.094 0.906 4 O -0.573 6.573 5 C 0.096 3.904 6 H 0.104 0.896 7 O -0.554 6.554 8 C 0.038 3.962 9 N -0.525 5.525 10 C 0.208 3.792 11 C -0.515 4.515 12 H 0.063 0.937 13 C -0.001 4.001 14 N -0.937 5.937 15 Si 0.968 3.032 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.259 1.259 19 C 0.129 3.871 20 C -0.017 4.017 21 C -0.202 4.202 22 C -0.220 4.220 23 C -0.058 4.058 24 O -0.205 6.205 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.388 0.612 29 H 0.383 0.617 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.001 0.999 33 H -0.038 1.038 34 H 0.263 0.737 35 H 0.124 0.876 36 H 0.030 0.970 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.989 -4.308 -2.158 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.018 3.982 3 H 0.112 0.888 4 O -0.381 6.381 5 C 0.036 3.964 6 H 0.121 0.879 7 O -0.360 6.360 8 C -0.090 4.090 9 N -0.249 5.249 10 C 0.082 3.918 11 C -0.554 4.554 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.578 5.578 15 Si 0.792 3.208 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.183 1.183 19 C 0.001 3.999 20 C -0.067 4.067 21 C -0.222 4.222 22 C -0.239 4.239 23 C -0.125 4.125 24 O -0.102 6.102 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.238 0.762 29 H 0.231 0.769 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.019 0.981 33 H -0.020 1.020 34 H 0.072 0.928 35 H 0.142 0.858 36 H 0.049 0.951 37 H 0.177 0.823 38 H 0.192 0.808 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -14.771 -4.145 -1.922 15.462 hybrid contribution 1.279 0.339 -0.165 1.334 sum -13.492 -3.806 -2.087 14.173 Atomic orbital electron populations 1.22320 0.93992 1.03370 1.03042 1.22586 0.94848 0.96803 0.83954 0.88841 1.86595 1.77708 1.30357 1.43407 1.22620 0.90677 0.97452 0.85627 0.87863 1.86523 1.75746 1.30065 1.43618 1.22669 0.96586 0.98717 0.91016 1.62031 1.15728 1.05840 1.41298 1.19415 0.82777 0.96405 0.93225 1.21424 0.92062 1.02915 1.38977 0.91834 1.25932 0.95965 1.01601 0.96340 1.70105 0.99398 1.39304 1.48944 0.85405 0.77806 0.79161 0.78390 1.20219 1.20846 1.18324 1.20625 1.02301 0.88006 0.88922 1.22559 0.84472 1.00217 0.99467 1.21744 1.01489 1.04732 0.94232 1.22129 0.95160 1.04669 1.01924 1.24718 0.99469 1.02958 0.85389 1.84059 1.37485 1.56695 1.31938 0.90794 0.91513 0.91414 0.76222 0.76893 0.91739 0.94799 0.98062 1.02024 0.92832 0.85820 0.95138 0.82321 0.80848 0.75551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.39 71.98 0.68 -2.20 16 2 C 0.08 1.70 3.35 30.60 0.10 1.80 16 3 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 4 O -0.57 -13.14 12.58 -148.98 -1.87 -15.02 16 5 C 0.10 2.53 2.71 30.60 0.08 2.61 16 6 H 0.10 2.46 6.10 -2.39 -0.01 2.44 16 7 O -0.55 -15.57 12.61 -148.98 -1.88 -17.45 16 8 C 0.04 1.38 4.35 86.30 0.38 1.76 16 9 N -0.52 -22.58 4.32 -905.35 -3.91 -26.49 16 10 C 0.21 11.46 4.59 85.56 0.39 11.85 16 11 C -0.52 -29.85 8.56 25.60 0.22 -29.63 16 12 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 13 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 14 N -0.94 -58.10 13.29 21.45 0.28 -57.82 16 15 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 19 C 0.13 4.75 5.37 85.56 0.46 5.21 16 20 C -0.02 -0.66 6.13 24.83 0.15 -0.51 16 21 C -0.20 -6.81 10.81 22.19 0.24 -6.57 16 22 C -0.22 -6.60 10.91 22.19 0.24 -6.36 16 23 C -0.06 -1.88 12.09 66.97 0.81 -1.07 16 24 O -0.20 -8.48 9.78 -2.53 -0.02 -8.51 16 25 H 0.07 1.27 7.68 -2.39 -0.02 1.25 16 26 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.39 5.84 9.04 -74.06 -0.67 5.17 16 29 H 0.38 9.26 9.05 -74.05 -0.67 8.59 16 30 H 0.06 2.63 7.44 -2.39 -0.02 2.61 16 31 H 0.03 1.25 7.51 -2.38 -0.02 1.24 16 32 H 0.00 0.08 6.45 -2.38 -0.02 0.06 16 33 H -0.04 -2.29 8.00 -2.39 -0.02 -2.31 16 34 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.12 3.55 5.87 -2.39 -0.01 3.54 16 36 H 0.03 1.16 8.05 -2.39 -0.02 1.14 16 37 H 0.16 4.68 8.06 -2.91 -0.02 4.65 16 38 H 0.17 3.91 8.06 -2.91 -0.02 3.88 16 39 H 0.23 5.27 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -74.37 327.06 -1.44 -75.81 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.28 Total: 25.01 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 4.21 Total: -22.70 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -3.63 Total: -84.31 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -3.78 Total: -40.97 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -74.37 -1.44 -75.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.904 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds