Wall clock time and date at job start Mon Mar 30 2020 01:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47080 * 2 1 4 4 O 1.42902 * 109.46741 * 240.00465 * 2 1 3 5 5 C 1.52995 * 109.47473 * 120.00137 * 2 1 3 6 6 H 1.09002 * 109.47060 * 295.00530 * 5 2 1 7 7 O 1.42900 * 109.46790 * 54.99916 * 5 2 1 8 8 C 1.52996 * 109.47362 * 174.99769 * 5 2 1 9 9 N 1.46900 * 109.47375 * 179.97438 * 8 5 2 10 10 C 1.46895 * 110.99984 * 169.99976 * 9 8 5 11 11 C 1.50698 * 109.47391 * 285.96502 * 10 9 8 12 12 H 1.08002 * 119.99885 * 4.65968 * 11 10 9 13 13 C 1.37878 * 120.00062 * 184.65826 * 11 10 9 14 14 N 1.31511 * 120.00079 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99868 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47291 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46940 * 120.00351 * 15 13 11 18 18 H 1.48499 * 109.47264 * 239.99983 * 15 13 11 19 19 C 1.46894 * 111.00186 * 293.95893 * 9 8 5 20 20 C 1.50701 * 109.47370 * 164.34197 * 19 9 8 21 21 C 1.34514 * 125.78487 * 95.69686 * 20 19 9 22 22 C 1.41388 * 106.83801 * 179.88998 * 21 20 19 23 23 C 1.34520 * 106.84134 * 0.37317 * 22 21 20 24 24 O 1.34302 * 125.79246 * 276.00859 * 20 19 9 25 25 H 1.08999 * 109.47037 * 300.00094 * 1 2 3 26 26 H 1.09000 * 109.47657 * 59.99950 * 1 2 3 27 27 H 1.09001 * 109.47080 * 179.97438 * 1 2 3 28 28 H 0.96698 * 113.99715 * 299.99145 * 4 2 1 29 29 H 0.96703 * 114.00105 * 60.00222 * 7 5 2 30 30 H 1.09003 * 109.47304 * 299.99984 * 8 5 2 31 31 H 1.09003 * 109.47061 * 59.99996 * 8 5 2 32 32 H 1.08994 * 109.47216 * 45.96926 * 10 9 8 33 33 H 1.09003 * 109.46640 * 165.96568 * 10 9 8 34 34 H 0.96999 * 120.00401 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.47340 * 284.34762 * 19 9 8 36 36 H 1.09003 * 109.47508 * 44.34048 * 19 9 8 37 37 H 1.07993 * 126.58645 * 0.03081 * 21 20 19 38 38 H 1.07995 * 126.58040 * 180.16247 * 22 21 20 39 39 H 1.07995 * 125.79302 * 179.74740 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7212 1.2492 6 1 1.7516 -0.1584 2.1369 7 8 1.4702 -2.0303 1.3093 8 6 3.5648 -0.8311 1.1878 9 7 4.0546 -1.5230 2.3875 10 6 5.4790 -1.8578 2.2575 11 6 5.6387 -3.0112 1.3008 12 1 4.7782 -3.4025 0.7784 13 6 6.8832 -3.5668 1.0923 14 7 7.9309 -3.0906 1.7288 15 14 7.0812 -4.9960 -0.0941 16 1 5.7602 -5.3413 -0.6780 17 1 8.0169 -4.6110 -1.1810 18 1 7.6240 -6.1715 0.6331 19 6 3.8102 -0.7217 3.5942 20 6 3.9607 -1.5928 4.8147 21 6 5.0719 -1.7129 5.5631 22 6 4.7702 -2.6246 6.6008 23 6 3.4952 -3.0134 6.4196 24 8 3.0100 -2.3852 5.3362 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7209 -1.5951 -1.2329 29 1 1.6858 -2.5884 0.5495 30 1 3.8532 -1.3940 0.3001 31 1 3.9995 0.1675 1.1419 32 1 6.0224 -0.9927 1.8776 33 1 5.8770 -2.1372 3.2330 34 1 8.8065 -3.4812 1.5820 35 1 4.5302 0.0953 3.6398 36 1 2.7998 -0.3140 3.5611 37 1 6.0131 -1.2080 5.4036 38 1 5.4366 -2.9494 7.3861 39 1 2.9538 -3.7124 7.0397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929774502.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:10 Heat of formation + Delta-G solvation = -81.238252 kcal Electronic energy + Delta-G solvation = -21466.638268 eV Core-core repulsion = 18183.267261 eV Total energy + Delta-G solvation = -3283.371008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.96206 -38.99351 -36.53856 -34.99452 -32.61008 -32.39207 -31.09061 -30.18819 -28.42880 -26.72460 -24.60787 -23.04352 -21.25204 -21.08346 -20.65558 -19.59455 -17.33298 -16.90018 -16.38981 -16.06594 -15.80300 -15.24161 -14.93824 -14.39619 -14.21154 -13.79964 -13.59307 -13.25405 -12.81753 -12.53106 -12.27377 -12.22790 -12.09611 -11.99771 -11.82015 -11.38533 -11.08558 -10.99003 -10.71742 -10.66226 -10.53722 -10.25963 -9.92995 -9.36588 -9.20202 -9.18932 -8.40267 -7.91825 -7.30084 -6.00387 -4.00644 2.28240 3.15850 3.32309 3.39621 3.43694 3.56571 4.30210 4.44089 4.53507 4.81272 5.06174 5.09522 5.20818 5.30871 5.36718 5.41090 5.55169 5.58040 5.66288 5.73869 5.83425 5.88158 5.94178 6.11077 6.28464 6.33606 6.47093 6.58395 6.62825 7.03930 7.20008 7.28855 7.62042 7.70414 7.80235 7.94658 8.10576 8.16974 8.51498 9.05287 9.62584 11.10560 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.008691 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.463099 B = 3220.925408 C = 5330.132648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.070 3.930 3 H 0.101 0.899 4 O -0.557 6.557 5 C 0.077 3.923 6 H 0.097 0.903 7 O -0.541 6.541 8 C 0.037 3.963 9 N -0.521 5.521 10 C 0.186 3.814 11 C -0.499 4.499 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.127 3.873 20 C 0.022 3.978 21 C -0.208 4.208 22 C -0.212 4.212 23 C -0.057 4.057 24 O -0.168 6.168 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.373 0.627 29 H 0.369 0.631 30 H 0.096 0.904 31 H 0.028 0.972 32 H -0.012 1.012 33 H 0.043 0.957 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.865 5.402 2.651 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.010 3.990 3 H 0.119 0.881 4 O -0.363 6.363 5 C 0.017 3.983 6 H 0.114 0.886 7 O -0.346 6.346 8 C -0.091 4.091 9 N -0.246 5.246 10 C 0.062 3.938 11 C -0.538 4.538 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.001 4.001 20 C -0.029 4.029 21 C -0.228 4.228 22 C -0.231 4.231 23 C -0.125 4.125 24 O -0.063 6.063 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.220 0.780 29 H 0.216 0.784 30 H 0.115 0.885 31 H 0.046 0.954 32 H 0.006 0.994 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.183 5.719 3.041 13.798 hybrid contribution 1.056 -0.840 -0.816 1.577 sum -11.127 4.879 2.224 12.352 Atomic orbital electron populations 1.22367 0.96064 1.03086 1.02030 1.22664 0.93463 0.97235 0.85658 0.88141 1.86632 1.77154 1.28935 1.43554 1.22727 0.93334 0.84880 0.97371 0.88566 1.86606 1.74886 1.24428 1.48668 1.22597 0.93284 0.97431 0.95780 1.62046 1.22758 1.40833 0.98922 1.19889 0.80130 0.95308 0.98488 1.21119 0.93375 1.15422 1.23864 0.91977 1.24969 0.95921 0.97305 0.96439 1.69958 0.99275 1.42024 1.42603 0.86465 0.78064 0.82302 0.80710 1.19679 1.21195 1.21117 1.20469 1.01142 0.91639 0.86889 1.22261 0.87555 0.96190 0.96860 1.21551 0.99222 1.04179 0.97839 1.21722 0.96645 1.02525 1.02200 1.23828 0.95756 1.01765 0.91147 1.84008 1.39945 1.46535 1.35841 0.91808 0.92335 0.91568 0.77983 0.78442 0.88535 0.95354 0.99432 0.93912 0.93060 0.92725 0.90538 0.83911 0.84133 0.78852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.34 37.16 0.35 -1.46 16 2 C 0.07 0.83 3.51 -26.73 -0.09 0.74 16 3 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 4 O -0.56 -7.27 12.46 -40.09 -0.50 -7.77 16 5 C 0.08 1.10 2.80 -26.74 -0.07 1.02 16 6 H 0.10 1.34 6.28 -51.93 -0.33 1.01 16 7 O -0.54 -8.27 12.32 -40.09 -0.49 -8.77 16 8 C 0.04 0.67 4.26 -3.83 -0.02 0.66 16 9 N -0.52 -10.99 4.25 -237.52 -1.01 -11.99 16 10 C 0.19 4.80 4.58 -4.98 -0.02 4.78 16 11 C -0.50 -13.95 8.57 -34.44 -0.30 -14.24 16 12 H 0.06 1.71 7.56 -52.49 -0.40 1.32 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 15 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 C 0.13 2.33 5.37 -4.98 -0.03 2.30 16 20 C 0.02 0.44 6.29 -35.62 -0.22 0.21 16 21 C -0.21 -3.97 9.53 -39.70 -0.38 -4.35 16 22 C -0.21 -3.57 10.91 -39.70 -0.43 -4.00 16 23 C -0.06 -0.91 12.09 29.42 0.36 -0.56 16 24 O -0.17 -3.21 10.65 5.71 0.06 -3.15 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.68 7.56 -51.93 -0.39 0.29 16 28 H 0.37 3.73 7.83 45.56 0.36 4.09 16 29 H 0.37 4.75 7.83 45.56 0.36 5.11 16 30 H 0.10 1.92 6.60 -51.93 -0.34 1.58 16 31 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 32 H -0.01 -0.33 8.02 -51.93 -0.42 -0.75 16 33 H 0.04 1.19 6.15 -51.93 -0.32 0.87 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.05 0.96 8.06 -51.93 -0.42 0.54 16 36 H 0.08 1.23 5.94 -51.93 -0.31 0.92 16 37 H 0.14 2.69 8.06 -52.49 -0.42 2.26 16 38 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.19 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -33.22 323.41 -6.61 -39.83 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -4.30 Total: 9.69 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -0.96 Total: -13.45 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.27 Total: -38.04 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.93 Total: -19.69 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.22 -6.61 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774502.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.405 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds