Wall clock time and date at job start Mon Mar 30 2020 01:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47080 * 2 1 4 4 O 1.42902 * 109.46741 * 240.00465 * 2 1 3 5 5 C 1.52995 * 109.47473 * 120.00137 * 2 1 3 6 6 H 1.09002 * 109.47060 * 295.00530 * 5 2 1 7 7 O 1.42900 * 109.46790 * 54.99916 * 5 2 1 8 8 C 1.52996 * 109.47362 * 174.99769 * 5 2 1 9 9 N 1.46900 * 109.47375 * 179.97438 * 8 5 2 10 10 C 1.46895 * 110.99984 * 169.99976 * 9 8 5 11 11 C 1.50698 * 109.47391 * 285.96502 * 10 9 8 12 12 H 1.08002 * 119.99885 * 4.65968 * 11 10 9 13 13 C 1.37878 * 120.00062 * 184.65826 * 11 10 9 14 14 N 1.31511 * 120.00079 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99868 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47291 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46940 * 120.00351 * 15 13 11 18 18 H 1.48499 * 109.47264 * 239.99983 * 15 13 11 19 19 C 1.46894 * 111.00186 * 293.95893 * 9 8 5 20 20 C 1.50701 * 109.47370 * 164.34197 * 19 9 8 21 21 C 1.34514 * 125.78487 * 95.69686 * 20 19 9 22 22 C 1.41388 * 106.83801 * 179.88998 * 21 20 19 23 23 C 1.34520 * 106.84134 * 0.37317 * 22 21 20 24 24 O 1.34302 * 125.79246 * 276.00859 * 20 19 9 25 25 H 1.08999 * 109.47037 * 300.00094 * 1 2 3 26 26 H 1.09000 * 109.47657 * 59.99950 * 1 2 3 27 27 H 1.09001 * 109.47080 * 179.97438 * 1 2 3 28 28 H 0.96698 * 113.99715 * 299.99145 * 4 2 1 29 29 H 0.96703 * 114.00105 * 60.00222 * 7 5 2 30 30 H 1.09003 * 109.47304 * 299.99984 * 8 5 2 31 31 H 1.09003 * 109.47061 * 59.99996 * 8 5 2 32 32 H 1.08994 * 109.47216 * 45.96926 * 10 9 8 33 33 H 1.09003 * 109.46640 * 165.96568 * 10 9 8 34 34 H 0.96999 * 120.00401 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.47340 * 284.34762 * 19 9 8 36 36 H 1.09003 * 109.47508 * 44.34048 * 19 9 8 37 37 H 1.07993 * 126.58645 * 0.03081 * 21 20 19 38 38 H 1.07995 * 126.58040 * 180.16247 * 22 21 20 39 39 H 1.07995 * 125.79302 * 179.74740 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7212 1.2492 6 1 1.7516 -0.1584 2.1369 7 8 1.4702 -2.0303 1.3093 8 6 3.5648 -0.8311 1.1878 9 7 4.0546 -1.5230 2.3875 10 6 5.4790 -1.8578 2.2575 11 6 5.6387 -3.0112 1.3008 12 1 4.7782 -3.4025 0.7784 13 6 6.8832 -3.5668 1.0923 14 7 7.9309 -3.0906 1.7288 15 14 7.0812 -4.9960 -0.0941 16 1 5.7602 -5.3413 -0.6780 17 1 8.0169 -4.6110 -1.1810 18 1 7.6240 -6.1715 0.6331 19 6 3.8102 -0.7217 3.5942 20 6 3.9607 -1.5928 4.8147 21 6 5.0719 -1.7129 5.5631 22 6 4.7702 -2.6246 6.6008 23 6 3.4952 -3.0134 6.4196 24 8 3.0100 -2.3852 5.3362 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7209 -1.5951 -1.2329 29 1 1.6858 -2.5884 0.5495 30 1 3.8532 -1.3940 0.3001 31 1 3.9995 0.1675 1.1419 32 1 6.0224 -0.9927 1.8776 33 1 5.8770 -2.1372 3.2330 34 1 8.8065 -3.4812 1.5820 35 1 4.5302 0.0953 3.6398 36 1 2.7998 -0.3140 3.5611 37 1 6.0131 -1.2080 5.4036 38 1 5.4366 -2.9494 7.3861 39 1 2.9538 -3.7124 7.0397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929774502.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:09 Heat of formation + Delta-G solvation = -107.980243 kcal Electronic energy + Delta-G solvation = -21467.797888 eV Core-core repulsion = 18183.267261 eV Total energy + Delta-G solvation = -3284.530627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.35704 -40.18385 -38.01895 -36.18093 -34.70630 -33.81199 -32.14887 -31.58006 -30.03642 -28.32285 -26.17180 -24.63029 -22.61082 -22.39873 -22.09433 -21.06295 -18.61157 -18.40000 -18.18966 -17.22548 -17.16576 -16.72513 -16.49443 -15.91169 -15.60389 -15.23769 -14.82245 -14.71853 -14.35926 -14.03853 -13.71279 -13.56200 -13.48569 -13.35829 -12.95965 -12.81502 -12.76303 -12.61897 -12.45048 -12.28487 -11.92234 -11.59034 -11.53519 -11.20739 -10.75480 -10.60711 -10.36415 -9.32854 -9.01158 -8.17915 -6.26359 0.88988 1.39983 1.40818 1.53693 1.76621 2.22988 2.40969 3.08785 3.17748 3.47489 3.66280 3.84289 3.95132 3.99739 4.14290 4.18620 4.26280 4.38542 4.43359 4.47605 4.50797 4.79660 4.94211 4.97184 4.99577 5.05653 5.16256 5.18511 5.27250 5.32706 5.38276 5.64834 5.69086 6.07166 6.28325 6.38324 6.55394 6.74262 6.87307 6.93005 7.41901 8.93045 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.008691 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.463099 B = 3220.925408 C = 5330.132648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 H 0.106 0.894 4 O -0.574 6.574 5 C 0.090 3.910 6 H 0.105 0.895 7 O -0.554 6.554 8 C 0.039 3.961 9 N -0.528 5.528 10 C 0.203 3.797 11 C -0.512 4.512 12 H 0.062 0.938 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.965 3.035 16 H -0.260 1.260 17 H -0.280 1.280 18 H -0.283 1.283 19 C 0.127 3.873 20 C -0.002 4.002 21 C -0.227 4.227 22 C -0.228 4.228 23 C -0.044 4.044 24 O -0.183 6.183 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.384 0.616 29 H 0.378 0.622 30 H 0.074 0.926 31 H 0.029 0.971 32 H -0.041 1.041 33 H 0.016 0.984 34 H 0.262 0.738 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.165 0.835 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.690 4.694 2.552 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 H 0.124 0.876 4 O -0.382 6.382 5 C 0.030 3.970 6 H 0.122 0.878 7 O -0.360 6.360 8 C -0.089 4.089 9 N -0.252 5.252 10 C 0.077 3.923 11 C -0.550 4.550 12 H 0.080 0.920 13 C -0.197 4.197 14 N -0.576 5.576 15 Si 0.790 3.210 16 H -0.184 1.184 17 H -0.206 1.206 18 H -0.209 1.209 19 C -0.001 4.001 20 C -0.053 4.053 21 C -0.247 4.247 22 C -0.247 4.247 23 C -0.111 4.111 24 O -0.079 6.079 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.234 0.766 29 H 0.226 0.774 30 H 0.092 0.908 31 H 0.047 0.953 32 H -0.023 1.023 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.150 0.850 38 H 0.183 0.817 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -14.034 5.015 2.933 15.189 hybrid contribution 1.625 -0.612 -0.720 1.880 sum -12.409 4.403 2.213 13.352 Atomic orbital electron populations 1.22291 0.94184 1.03343 1.02915 1.22634 0.94750 0.96919 0.84003 0.87607 1.86605 1.77679 1.30054 1.43869 1.22646 0.90177 0.85022 0.99107 0.87751 1.86576 1.74784 1.25023 1.49584 1.22636 0.96171 0.96547 0.93574 1.61947 1.19440 1.42763 1.01040 1.19494 0.82791 0.93688 0.96317 1.21442 0.93517 1.15939 1.24142 0.91972 1.25868 0.95596 1.00094 0.98182 1.70088 0.99795 1.43564 1.44168 0.85394 0.78495 0.78668 0.78439 1.18388 1.20564 1.20858 1.20538 1.02658 0.91334 0.85525 1.22385 0.88006 0.97323 0.97585 1.21749 0.98936 1.04981 0.99071 1.22066 0.97768 1.02385 1.02463 1.24761 0.95724 1.00746 0.89912 1.83997 1.40153 1.46818 1.36888 0.90923 0.91436 0.91618 0.76626 0.77400 0.90792 0.95280 1.02325 0.96555 0.92918 0.92454 0.87906 0.84954 0.81715 0.74225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.34 71.98 0.67 -2.35 16 2 C 0.08 1.69 3.51 30.59 0.11 1.80 16 3 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 4 O -0.57 -14.24 12.46 -144.34 -1.80 -16.04 16 5 C 0.09 2.45 2.80 30.59 0.09 2.53 16 6 H 0.10 2.68 6.28 -2.39 -0.01 2.66 16 7 O -0.55 -16.07 12.32 -144.34 -1.78 -17.85 16 8 C 0.04 1.40 4.26 86.30 0.37 1.76 16 9 N -0.53 -22.57 4.25 -905.39 -3.85 -26.42 16 10 C 0.20 10.86 4.58 85.56 0.39 11.25 16 11 C -0.51 -29.16 8.57 25.60 0.22 -28.94 16 12 H 0.06 3.46 7.56 -2.91 -0.02 3.43 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.94 -57.02 13.29 21.45 0.28 -56.73 16 15 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 19 C 0.13 4.69 5.37 85.56 0.46 5.15 16 20 C 0.00 -0.09 6.29 24.83 0.16 0.07 16 21 C -0.23 -8.86 9.53 22.19 0.21 -8.65 16 22 C -0.23 -7.45 10.91 22.19 0.24 -7.20 16 23 C -0.04 -1.33 12.09 66.97 0.81 -0.52 16 24 O -0.18 -6.77 10.65 -2.47 -0.03 -6.79 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.18 7.56 -2.39 -0.02 1.17 16 28 H 0.38 7.19 7.83 -74.06 -0.58 6.61 16 29 H 0.38 9.28 7.83 -74.06 -0.58 8.70 16 30 H 0.07 2.99 6.60 -2.39 -0.02 2.98 16 31 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 32 H -0.04 -2.36 8.02 -2.39 -0.02 -2.38 16 33 H 0.02 0.95 6.15 -2.39 -0.01 0.94 16 34 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.06 2.06 8.06 -2.39 -0.02 2.04 16 36 H 0.10 3.20 5.94 -2.39 -0.01 3.18 16 37 H 0.13 5.28 8.06 -2.91 -0.02 5.26 16 38 H 0.17 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.24 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -72.23 323.41 -1.05 -73.28 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.10 Total: 28.26 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 4.19 Total: -24.61 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -3.56 Total: -83.16 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -3.60 Total: -40.68 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -72.23 -1.05 -73.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774502.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.701 kcal (2) G-P(sol) polarization free energy of solvation -72.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds