Wall clock time and date at job start Mon Mar 30 2020 01:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47149 * 2 1 4 4 O 1.42902 * 109.47020 * 120.00562 * 2 1 3 5 5 C 1.52998 * 109.46778 * 239.99994 * 2 1 3 6 6 H 1.09001 * 109.47291 * 65.00200 * 5 2 1 7 7 O 1.42906 * 109.47155 * 305.00184 * 5 2 1 8 8 C 1.52998 * 109.47149 * 185.00198 * 5 2 1 9 9 N 1.46899 * 109.47226 * 187.60275 * 8 5 2 10 10 C 1.46895 * 111.00158 * 286.46960 * 9 8 5 11 11 C 1.50703 * 109.47445 * 174.73026 * 10 9 8 12 12 H 1.07998 * 119.99805 * 354.87982 * 11 10 9 13 13 C 1.37875 * 120.00286 * 174.87147 * 11 10 9 14 14 N 1.31522 * 119.99816 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00104 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47332 * 90.00363 * 15 13 11 17 17 H 1.48504 * 109.46906 * 210.00182 * 15 13 11 18 18 H 1.48494 * 109.47118 * 330.00025 * 15 13 11 19 19 C 1.46906 * 111.00073 * 162.50926 * 9 8 5 20 20 C 1.50700 * 109.47065 * 293.95465 * 19 9 8 21 21 C 1.34509 * 125.78668 * 89.71746 * 20 19 9 22 22 C 1.41385 * 106.84048 * 179.88957 * 21 20 19 23 23 C 1.34510 * 106.83676 * 0.36887 * 22 21 20 24 24 O 1.34298 * 125.78776 * 270.01991 * 20 19 9 25 25 H 1.08994 * 109.47569 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47123 * 59.99403 * 1 2 3 27 27 H 1.09005 * 109.46804 * 300.00197 * 1 2 3 28 28 H 0.96705 * 113.99676 * 299.99362 * 4 2 1 29 29 H 0.96695 * 114.00121 * 299.99840 * 7 5 2 30 30 H 1.09000 * 109.47287 * 307.60196 * 8 5 2 31 31 H 1.08996 * 109.47361 * 67.60452 * 8 5 2 32 32 H 1.09008 * 109.47022 * 294.72442 * 10 9 8 33 33 H 1.08991 * 109.47774 * 54.72480 * 10 9 8 34 34 H 0.96994 * 120.00005 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.46459 * 53.95638 * 19 9 8 36 36 H 1.09003 * 109.46956 * 173.95112 * 19 9 8 37 37 H 1.08001 * 126.58014 * 0.02562 * 21 20 19 38 38 H 1.08000 * 126.58393 * 180.16800 * 22 21 20 39 39 H 1.08008 * 125.78692 * 179.75040 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.0399 -0.7213 -1.2493 6 1 1.7516 -0.1583 -2.1370 7 8 1.4701 -2.0304 -1.3094 8 6 3.5647 -0.8311 -1.1880 9 7 4.0694 -1.3571 -2.4634 10 6 3.7795 -2.7913 -2.5930 11 6 4.1941 -3.2660 -3.9619 12 1 4.5522 -2.5571 -4.6937 13 6 4.1164 -4.6053 -4.2800 14 7 3.6800 -5.4686 -3.3889 15 14 4.6310 -5.1938 -5.9766 16 1 6.0761 -5.5352 -5.9649 17 1 3.8412 -6.3965 -6.3440 18 1 4.3847 -4.1175 -6.9696 19 6 5.5076 -1.0954 -2.6087 20 6 5.7395 0.3898 -2.7165 21 6 5.9533 1.2292 -1.6874 22 6 6.1227 2.5196 -2.2398 23 6 5.9941 2.3928 -3.5727 24 8 5.7621 1.1005 -3.8557 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5139 0.8900 28 1 1.7210 -0.2702 1.9980 29 1 1.6856 -2.5885 -0.5498 30 1 3.9931 0.1546 -1.0066 31 1 3.8483 -1.5049 -0.3796 32 1 4.3332 -3.3440 -1.8338 33 1 2.7112 -2.9598 -2.4582 34 1 3.6257 -6.4109 -3.6125 35 1 6.0371 -1.4837 -1.7388 36 1 5.8774 -1.5872 -3.5085 37 1 5.9908 0.9674 -0.6403 38 1 6.3148 3.4326 -1.6958 39 1 6.0649 3.1943 -4.2932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929774508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:14 Heat of formation + Delta-G solvation = -78.605695 kcal Electronic energy + Delta-G solvation = -21476.149567 eV Core-core repulsion = 18192.892715 eV Total energy + Delta-G solvation = -3283.256851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.18848 -38.70603 -36.54360 -35.00363 -32.77367 -32.37192 -31.00580 -30.10988 -28.59495 -26.40163 -24.76410 -22.80629 -21.40770 -21.00471 -20.51216 -19.76817 -17.43610 -16.96687 -16.43399 -15.94943 -15.70153 -15.06343 -14.90512 -14.53526 -14.26975 -13.83670 -13.52764 -13.05065 -12.86150 -12.53146 -12.49781 -12.36469 -12.04227 -11.90554 -11.53010 -11.40218 -11.14378 -10.77426 -10.73729 -10.54018 -10.34891 -9.97685 -9.85503 -9.62726 -9.42775 -8.82140 -8.32751 -8.10455 -7.21731 -5.94437 -3.94126 2.09824 2.90297 3.36588 3.41036 3.42952 3.48087 4.27473 4.48657 4.64894 4.92043 5.06718 5.11770 5.29968 5.31449 5.35569 5.42132 5.47103 5.72894 5.79505 5.82559 5.89120 5.93823 6.09667 6.18093 6.23715 6.28906 6.32713 6.55140 6.61235 6.84437 7.40535 7.44077 7.59184 7.62978 7.87857 8.22994 8.23544 8.27321 8.61856 9.13213 9.68461 11.16274 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.007649 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.312409 B = 3659.791908 C = 5587.560148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 H 0.056 0.944 4 O -0.564 6.564 5 C 0.127 3.873 6 H 0.109 0.891 7 O -0.540 6.540 8 C 0.022 3.978 9 N -0.528 5.528 10 C 0.177 3.823 11 C -0.510 4.510 12 H 0.061 0.939 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.893 3.107 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.128 3.872 20 C 0.031 3.969 21 C -0.232 4.232 22 C -0.215 4.215 23 C -0.057 4.057 24 O -0.166 6.166 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.373 0.627 29 H 0.374 0.626 30 H 0.070 0.930 31 H 0.037 0.963 32 H -0.011 1.011 33 H 0.075 0.925 34 H 0.260 0.740 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 14.424 7.624 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.008 3.992 3 H 0.074 0.926 4 O -0.369 6.369 5 C 0.067 3.933 6 H 0.127 0.873 7 O -0.345 6.345 8 C -0.107 4.107 9 N -0.253 5.253 10 C 0.053 3.947 11 C -0.549 4.549 12 H 0.079 0.921 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.721 3.279 16 H -0.209 1.209 17 H -0.213 1.213 18 H -0.198 1.198 19 C 0.001 3.999 20 C -0.021 4.021 21 C -0.252 4.252 22 C -0.235 4.235 23 C -0.125 4.125 24 O -0.061 6.061 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.219 0.781 29 H 0.222 0.778 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.006 0.994 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.932 14.161 5.946 15.387 hybrid contribution 0.728 -0.256 0.932 1.210 sum -0.204 13.905 6.877 15.514 Atomic orbital electron populations 1.22374 0.96029 1.03518 1.01672 1.22676 0.93580 0.95834 0.87069 0.92565 1.86547 1.76939 1.57633 1.15768 1.21905 0.92121 0.84692 0.94565 0.87293 1.86627 1.75577 1.24035 1.48256 1.22739 0.95584 1.00272 0.92107 1.62140 1.11237 1.21532 1.30341 1.20231 0.99660 0.78685 0.96142 1.21218 1.42914 0.92275 0.98503 0.92081 1.24937 0.95623 0.96783 0.97069 1.69960 1.47060 1.02445 1.34100 0.86574 0.78303 0.78277 0.84729 1.20866 1.21308 1.19834 1.20543 0.91649 0.84490 1.03261 1.22916 1.01101 0.95338 0.82743 1.21524 1.11171 0.92847 0.99638 1.21705 1.08824 0.98557 0.94368 1.23910 1.06955 0.84567 0.97089 1.84093 1.68976 1.18537 1.34493 0.90905 0.91641 0.93091 0.78073 0.77798 0.91140 0.94470 0.99351 0.90748 0.93081 0.92861 0.87668 0.84139 0.84153 0.78783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 9.34 37.16 0.35 -1.67 16 2 C 0.07 0.87 3.47 -26.73 -0.09 0.77 16 3 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 4 O -0.56 -7.00 12.26 -40.09 -0.49 -7.49 16 5 C 0.13 2.13 3.08 -26.73 -0.08 2.04 16 6 H 0.11 1.92 8.14 -51.93 -0.42 1.49 16 7 O -0.54 -10.30 9.48 -40.09 -0.38 -10.68 16 8 C 0.02 0.40 4.32 -3.83 -0.02 0.38 16 9 N -0.53 -11.46 4.47 -237.52 -1.06 -12.52 16 10 C 0.18 4.58 4.45 -4.98 -0.02 4.56 16 11 C -0.51 -14.47 8.22 -34.44 -0.28 -14.75 16 12 H 0.06 1.73 7.06 -52.49 -0.37 1.36 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 15 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.13 2.59 5.33 -4.97 -0.03 2.56 16 20 C 0.03 0.55 6.29 -35.63 -0.22 0.33 16 21 C -0.23 -3.60 9.10 -39.70 -0.36 -3.96 16 22 C -0.22 -2.92 10.91 -39.70 -0.43 -3.35 16 23 C -0.06 -0.79 12.09 29.41 0.36 -0.43 16 24 O -0.17 -2.97 10.65 5.71 0.06 -2.91 16 25 H 0.07 0.93 7.56 -51.93 -0.39 0.54 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.37 2.93 9.08 45.56 0.41 3.34 16 29 H 0.37 6.64 8.72 45.56 0.40 7.04 16 30 H 0.07 1.19 5.41 -51.93 -0.28 0.91 16 31 H 0.04 0.71 7.71 -51.93 -0.40 0.31 16 32 H -0.01 -0.32 8.14 -51.92 -0.42 -0.74 16 33 H 0.07 2.04 5.16 -51.93 -0.27 1.78 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 36 H 0.11 2.32 6.40 -51.93 -0.33 1.99 16 37 H 0.14 1.99 7.90 -52.49 -0.41 1.57 16 38 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 39 H 0.20 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -32.43 321.32 -6.42 -38.85 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.16 Total: 10.95 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -0.94 Total: -11.99 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.33 Total: -38.58 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.81 Total: -21.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.43 -6.42 -38.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.760 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds