Wall clock time and date at job start Mon Mar 30 2020 01:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47149 * 2 1 4 4 O 1.42902 * 109.47020 * 120.00562 * 2 1 3 5 5 C 1.52998 * 109.46778 * 239.99994 * 2 1 3 6 6 H 1.09001 * 109.47291 * 65.00200 * 5 2 1 7 7 O 1.42906 * 109.47155 * 305.00184 * 5 2 1 8 8 C 1.52998 * 109.47149 * 185.00198 * 5 2 1 9 9 N 1.46899 * 109.47226 * 187.60275 * 8 5 2 10 10 C 1.46895 * 111.00158 * 286.46960 * 9 8 5 11 11 C 1.50703 * 109.47445 * 174.73026 * 10 9 8 12 12 H 1.07998 * 119.99805 * 354.87982 * 11 10 9 13 13 C 1.37875 * 120.00286 * 174.87147 * 11 10 9 14 14 N 1.31522 * 119.99816 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00104 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47332 * 90.00363 * 15 13 11 17 17 H 1.48504 * 109.46906 * 210.00182 * 15 13 11 18 18 H 1.48494 * 109.47118 * 330.00025 * 15 13 11 19 19 C 1.46906 * 111.00073 * 162.50926 * 9 8 5 20 20 C 1.50700 * 109.47065 * 293.95465 * 19 9 8 21 21 C 1.34509 * 125.78668 * 89.71746 * 20 19 9 22 22 C 1.41385 * 106.84048 * 179.88957 * 21 20 19 23 23 C 1.34510 * 106.83676 * 0.36887 * 22 21 20 24 24 O 1.34298 * 125.78776 * 270.01991 * 20 19 9 25 25 H 1.08994 * 109.47569 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47123 * 59.99403 * 1 2 3 27 27 H 1.09005 * 109.46804 * 300.00197 * 1 2 3 28 28 H 0.96705 * 113.99676 * 299.99362 * 4 2 1 29 29 H 0.96695 * 114.00121 * 299.99840 * 7 5 2 30 30 H 1.09000 * 109.47287 * 307.60196 * 8 5 2 31 31 H 1.08996 * 109.47361 * 67.60452 * 8 5 2 32 32 H 1.09008 * 109.47022 * 294.72442 * 10 9 8 33 33 H 1.08991 * 109.47774 * 54.72480 * 10 9 8 34 34 H 0.96994 * 120.00005 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.46459 * 53.95638 * 19 9 8 36 36 H 1.09003 * 109.46956 * 173.95112 * 19 9 8 37 37 H 1.08001 * 126.58014 * 0.02562 * 21 20 19 38 38 H 1.08000 * 126.58393 * 180.16800 * 22 21 20 39 39 H 1.08008 * 125.78692 * 179.75040 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 2.0399 -0.7213 -1.2493 6 1 1.7516 -0.1583 -2.1370 7 8 1.4701 -2.0304 -1.3094 8 6 3.5647 -0.8311 -1.1880 9 7 4.0694 -1.3571 -2.4634 10 6 3.7795 -2.7913 -2.5930 11 6 4.1941 -3.2660 -3.9619 12 1 4.5522 -2.5571 -4.6937 13 6 4.1164 -4.6053 -4.2800 14 7 3.6800 -5.4686 -3.3889 15 14 4.6310 -5.1938 -5.9766 16 1 6.0761 -5.5352 -5.9649 17 1 3.8412 -6.3965 -6.3440 18 1 4.3847 -4.1175 -6.9696 19 6 5.5076 -1.0954 -2.6087 20 6 5.7395 0.3898 -2.7165 21 6 5.9533 1.2292 -1.6874 22 6 6.1227 2.5196 -2.2398 23 6 5.9941 2.3928 -3.5727 24 8 5.7621 1.1005 -3.8557 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5139 0.8900 28 1 1.7210 -0.2702 1.9980 29 1 1.6856 -2.5885 -0.5498 30 1 3.9931 0.1546 -1.0066 31 1 3.8483 -1.5049 -0.3796 32 1 4.3332 -3.3440 -1.8338 33 1 2.7112 -2.9598 -2.4582 34 1 3.6257 -6.4109 -3.6125 35 1 6.0371 -1.4837 -1.7388 36 1 5.8774 -1.5872 -3.5085 37 1 5.9908 0.9674 -0.6403 38 1 6.3148 3.4326 -1.6958 39 1 6.0649 3.1943 -4.2932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929774508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:13 Heat of formation + Delta-G solvation = -105.146033 kcal Electronic energy + Delta-G solvation = -21477.300442 eV Core-core repulsion = 18192.892715 eV Total energy + Delta-G solvation = -3284.407727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.41499 -40.03397 -37.97216 -36.38658 -34.73366 -33.78005 -32.16203 -31.48320 -30.15657 -28.13241 -26.26169 -24.48671 -22.59169 -22.42088 -21.91669 -21.15259 -18.58719 -18.49752 -18.06312 -17.38301 -17.19224 -16.59555 -16.42172 -15.92531 -15.80461 -15.17135 -14.95985 -14.57773 -14.27440 -14.03255 -13.67429 -13.58810 -13.54860 -13.26312 -12.95627 -12.91361 -12.67849 -12.59117 -12.36874 -12.16982 -12.08888 -11.67048 -11.33652 -10.93993 -10.74176 -10.67833 -10.34175 -9.37800 -8.97740 -8.15932 -6.23357 0.87068 1.39425 1.40921 1.52416 1.76402 2.21711 2.42056 3.16312 3.19835 3.37941 3.57016 3.87122 4.07334 4.07933 4.20305 4.23396 4.33044 4.35482 4.39548 4.54618 4.68178 4.74123 4.87935 4.93968 4.99372 5.06212 5.18923 5.27200 5.30482 5.36585 5.55197 5.67270 5.72049 6.15023 6.31378 6.34389 6.65450 6.81736 6.92220 6.94238 7.43867 8.94854 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.007649 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.312409 B = 3659.791908 C = 5587.560148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.081 3.919 3 H 0.078 0.922 4 O -0.580 6.580 5 C 0.121 3.879 6 H 0.099 0.901 7 O -0.561 6.561 8 C 0.030 3.970 9 N -0.536 5.536 10 C 0.196 3.804 11 C -0.527 4.527 12 H 0.054 0.946 13 C 0.005 3.995 14 N -0.929 5.929 15 Si 0.961 3.039 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.270 1.270 19 C 0.134 3.866 20 C -0.009 4.009 21 C -0.216 4.216 22 C -0.216 4.216 23 C -0.050 4.050 24 O -0.195 6.195 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.395 0.605 29 H 0.376 0.624 30 H 0.089 0.911 31 H 0.025 0.975 32 H -0.044 1.044 33 H 0.058 0.942 34 H 0.263 0.737 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.154 0.846 38 H 0.176 0.824 39 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 17.013 7.899 18.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.022 3.978 3 H 0.096 0.904 4 O -0.389 6.389 5 C 0.062 3.938 6 H 0.116 0.884 7 O -0.367 6.367 8 C -0.098 4.098 9 N -0.260 5.260 10 C 0.070 3.930 11 C -0.565 4.565 12 H 0.072 0.928 13 C -0.193 4.193 14 N -0.569 5.569 15 Si 0.786 3.214 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.194 1.194 19 C 0.006 3.994 20 C -0.060 4.060 21 C -0.236 4.236 22 C -0.235 4.235 23 C -0.117 4.117 24 O -0.092 6.092 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.245 0.755 29 H 0.224 0.776 30 H 0.108 0.892 31 H 0.043 0.957 32 H -0.026 1.026 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.171 0.829 38 H 0.194 0.806 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.676 16.778 6.249 17.917 hybrid contribution 0.684 -0.944 0.889 1.467 sum 0.008 15.834 7.138 17.369 Atomic orbital electron populations 1.22325 0.94834 1.02722 1.03180 1.22428 0.94284 0.95753 0.85384 0.90389 1.86500 1.77249 1.58351 1.16773 1.22016 0.90961 0.84085 0.96758 0.88355 1.86584 1.75832 1.25422 1.48825 1.22756 0.96761 1.00417 0.89858 1.62061 1.12681 1.18634 1.32665 1.19825 0.97917 0.81050 0.94177 1.21508 1.42957 0.92646 0.99412 0.92803 1.25790 0.95523 0.96888 1.01080 1.70081 1.47955 1.02782 1.36107 0.85511 0.78315 0.77767 0.79805 1.19818 1.20580 1.19435 1.20295 0.90496 0.86821 1.01795 1.22430 1.05232 0.94361 0.83928 1.21784 1.08729 0.93426 0.99644 1.22094 1.08253 0.98791 0.94352 1.24858 1.04615 0.83626 0.98569 1.84055 1.69832 1.20406 1.34865 0.92845 0.91619 0.90079 0.75492 0.77611 0.89248 0.95703 1.02585 0.92450 0.92854 0.92815 0.90669 0.82865 0.80632 0.74705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 9.34 71.98 0.67 -2.94 16 2 C 0.08 1.92 3.47 30.59 0.11 2.03 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 4 O -0.58 -13.44 12.26 -144.34 -1.77 -15.21 16 5 C 0.12 4.09 3.08 30.59 0.09 4.18 16 6 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 7 O -0.56 -22.28 9.48 -144.34 -1.37 -23.65 16 8 C 0.03 1.12 4.32 86.30 0.37 1.49 16 9 N -0.54 -24.24 4.47 -905.37 -4.05 -28.29 16 10 C 0.20 10.70 4.45 85.56 0.38 11.08 16 11 C -0.53 -31.10 8.22 25.60 0.21 -30.89 16 12 H 0.05 3.19 7.06 -2.91 -0.02 3.16 16 13 C 0.01 0.31 5.46 84.65 0.46 0.78 16 14 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 15 Si 0.96 46.06 29.54 68.60 2.03 48.08 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 C 0.13 5.63 5.33 85.56 0.46 6.08 16 20 C -0.01 -0.32 6.29 24.83 0.16 -0.16 16 21 C -0.22 -6.25 9.10 22.19 0.20 -6.05 16 22 C -0.22 -5.05 10.91 22.19 0.24 -4.81 16 23 C -0.05 -1.22 12.09 66.97 0.81 -0.41 16 24 O -0.20 -6.83 10.65 -2.47 -0.03 -6.86 16 25 H 0.05 1.33 7.56 -2.39 -0.02 1.31 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.39 5.16 9.08 -74.05 -0.67 4.48 16 29 H 0.38 14.11 8.72 -74.06 -0.65 13.47 16 30 H 0.09 2.93 5.41 -2.39 -0.01 2.92 16 31 H 0.02 0.98 7.71 -2.39 -0.02 0.96 16 32 H -0.04 -2.60 8.14 -2.38 -0.02 -2.62 16 33 H 0.06 3.34 5.16 -2.39 -0.01 3.33 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.05 2.18 8.12 -2.39 -0.02 2.16 16 36 H 0.07 3.54 6.40 -2.39 -0.02 3.53 16 37 H 0.15 3.96 7.90 -2.91 -0.02 3.93 16 38 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 39 H 0.24 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -72.76 321.32 -0.99 -73.75 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: -0.25 Total: 28.68 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 4.16 Total: -19.61 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -3.76 Total: -85.18 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -3.16 Total: -45.72 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.76 -0.99 -73.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.400 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds