Wall clock time and date at job start Mon Mar 30 2020 01:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52808 * 2 1 4 4 O 1.43069 * 109.52474 * 239.79859 * 2 1 3 5 5 C 1.43077 * 113.59579 * 182.14223 * 4 2 1 6 6 C 1.53152 * 109.14650 * 57.95650 * 5 4 2 7 7 O 1.43196 * 109.18469 * 304.68606 * 6 5 4 8 8 C 1.43074 * 113.52088 * 57.90818 * 7 6 5 9 9 H 1.08995 * 109.53007 * 182.14005 * 8 7 6 10 10 C 1.50707 * 109.52049 * 62.01419 * 8 7 6 11 11 O 1.21277 * 120.00000 * 344.01739 * 10 8 7 12 12 N 1.34779 * 119.99559 * 164.02020 * 10 8 7 13 13 C 1.46501 * 119.99596 * 183.66690 * 12 10 8 14 14 C 1.52999 * 109.46968 * 175.10923 * 13 12 10 15 15 C 1.50701 * 115.55353 * 280.88148 * 14 13 12 16 16 H 1.08004 * 119.99993 * 144.05172 * 15 14 13 17 17 C 1.37875 * 119.99997 * 324.06332 * 15 14 13 18 18 N 1.31515 * 119.99715 * 339.33837 * 17 15 14 19 19 Si 1.86801 * 120.00340 * 159.34328 * 17 15 14 20 20 H 1.48508 * 109.46797 * 5.00009 * 19 17 15 21 21 H 1.48494 * 109.47213 * 124.99936 * 19 17 15 22 22 H 1.48498 * 109.47011 * 245.00299 * 19 17 15 23 23 C 1.53000 * 117.50002 * 135.17595 * 14 13 12 24 24 C 1.52996 * 60.00076 * 252.51120 * 23 14 13 25 25 H 1.08996 * 109.47047 * 289.31797 * 1 2 3 26 26 H 1.09005 * 109.46977 * 49.31661 * 1 2 3 27 27 H 1.08994 * 109.47145 * 169.31582 * 1 2 3 28 28 H 1.08998 * 109.52942 * 177.85360 * 5 4 2 29 29 H 1.08994 * 109.53009 * 297.99264 * 5 4 2 30 30 H 1.09001 * 109.51844 * 64.58841 * 6 5 4 31 31 H 1.08996 * 109.52159 * 184.71985 * 6 5 4 32 32 H 0.96999 * 120.00520 * 3.66076 * 12 10 8 33 33 H 1.08993 * 109.47424 * 295.10912 * 13 12 10 34 34 H 1.09001 * 109.46998 * 55.11106 * 13 12 10 35 35 H 0.97008 * 119.99840 * 185.02081 * 18 17 15 36 36 H 1.09008 * 117.49467 * 0.02562 * 23 14 13 37 37 H 1.08998 * 117.50354 * 145.02047 * 23 14 13 38 38 H 1.09003 * 117.50140 * 252.50932 * 24 23 14 39 39 H 1.09000 * 117.50369 * 107.48873 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 8 2.0082 -0.6783 -1.1654 5 6 3.4345 -0.7719 -1.2288 6 6 3.9463 -1.4965 0.0197 7 8 3.4682 -0.8181 1.1866 8 6 2.0418 -0.7245 1.2484 9 1 1.7515 -0.1661 2.1383 10 6 1.4483 -2.1085 1.3064 11 8 2.1236 -3.0708 1.0084 12 7 0.1671 -2.2767 1.6894 13 6 -0.3861 -3.6267 1.8233 14 6 -1.8074 -3.5421 2.3833 15 6 -1.9080 -3.3258 3.8713 16 1 -2.6983 -2.7105 4.2754 17 6 -0.9910 -3.9133 4.7168 18 7 -0.2984 -4.9559 4.3134 19 14 -0.7324 -3.2284 6.4354 20 1 -1.7106 -2.1396 6.6867 21 1 -0.9282 -4.3099 7.4339 22 1 0.6471 -2.6910 6.5517 23 6 -2.8805 -4.4085 1.7209 24 6 -2.8768 -2.8944 1.5014 25 1 -0.3633 0.3400 0.9698 26 1 -0.3633 0.6699 -0.7793 27 1 -0.3633 -1.0098 -0.1905 28 1 3.7237 -1.3310 -2.1186 29 1 3.8638 0.2290 -1.2719 30 1 3.5810 -2.5234 0.0202 31 1 5.0363 -1.4975 0.0190 32 1 -0.3887 -1.5041 1.8764 33 1 -0.4088 -4.1086 0.8460 34 1 0.2375 -4.2093 2.5013 35 1 0.2930 -5.4139 4.9312 36 1 -2.5737 -5.0391 0.8863 37 1 -3.6593 -4.8224 2.3613 38 1 -3.6533 -2.3120 1.9975 39 1 -2.5678 -2.5284 0.5223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935782103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:37 Heat of formation + Delta-G solvation = -91.783569 kcal Electronic energy + Delta-G solvation = -22137.575533 eV Core-core repulsion = 18853.747246 eV Total energy + Delta-G solvation = -3283.828287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65661 -38.16880 -36.72416 -35.86515 -33.86589 -32.36822 -32.25500 -28.92280 -27.46800 -25.93260 -25.02023 -23.21500 -21.77240 -21.26995 -19.70721 -19.17823 -17.08874 -16.93743 -16.71615 -16.03421 -15.76345 -15.24376 -14.82608 -14.69485 -14.20788 -13.95384 -13.53279 -13.30342 -12.86717 -12.65010 -12.27218 -12.12972 -11.94557 -11.75737 -11.56203 -11.50562 -11.01981 -10.88070 -10.76357 -10.53273 -10.47469 -10.34051 -9.61051 -9.41032 -9.30967 -8.84858 -8.53059 -8.21741 -7.93883 -6.17174 -4.16142 3.09806 3.20859 3.31970 3.33428 3.58678 3.81867 3.88907 4.29246 4.54041 4.84677 4.89119 5.04205 5.06954 5.20321 5.34016 5.39372 5.42375 5.47624 5.57950 5.76694 5.87084 5.97621 6.14805 6.23298 6.27799 6.49514 6.57659 6.62656 6.89394 6.98006 7.04681 7.04874 7.24737 7.40414 7.55442 7.92754 8.25293 8.33192 8.77355 8.89630 9.41403 10.84930 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.006549 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.526334 B = 4274.542156 C = 4837.507494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 H 0.075 0.925 4 O -0.371 6.371 5 C 0.029 3.971 6 C -0.005 4.005 7 O -0.357 6.357 8 C 0.038 3.962 9 H 0.130 0.870 10 C 0.494 3.506 11 O -0.541 6.541 12 N -0.699 5.699 13 C 0.142 3.858 14 C 0.040 3.960 15 C -0.501 4.501 16 H 0.064 0.936 17 C 0.076 3.924 18 N -0.864 5.864 19 Si 0.886 3.114 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.280 1.280 23 C -0.193 4.193 24 C -0.211 4.211 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.395 0.605 33 H 0.031 0.969 34 H 0.121 0.879 35 H 0.265 0.735 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 10.117 -7.972 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 H 0.093 0.907 4 O -0.290 6.290 5 C -0.048 4.048 6 C -0.081 4.081 7 O -0.274 6.274 8 C -0.024 4.024 9 H 0.148 0.852 10 C 0.278 3.722 11 O -0.420 6.420 12 N -0.350 5.350 13 C 0.020 3.980 14 C 0.039 3.961 15 C -0.537 4.537 16 H 0.082 0.918 17 C -0.129 4.129 18 N -0.499 5.499 19 Si 0.713 3.287 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.206 1.206 23 C -0.232 4.232 24 C -0.249 4.249 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.071 0.929 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.230 0.770 33 H 0.050 0.950 34 H 0.139 0.861 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.768 9.306 -8.115 13.236 hybrid contribution -0.121 0.640 1.013 1.204 sum 4.647 9.946 -7.101 13.075 Atomic orbital electron populations 1.22008 0.91867 1.04654 1.03098 1.22606 0.96355 0.95256 0.84896 0.90704 1.88122 1.20868 1.78379 1.41643 1.23214 0.81673 1.00292 0.99589 1.23798 0.99740 1.00230 0.84315 1.88140 1.17886 1.77728 1.43645 1.22908 0.83492 0.95259 1.00713 0.85224 1.20851 0.82710 0.90709 0.77889 1.90496 1.59941 1.41996 1.49593 1.46275 1.11113 1.11026 1.66552 1.21324 0.96207 0.81580 0.98899 1.19159 0.86184 0.97701 0.93070 1.20476 1.12965 1.31681 0.88626 0.91792 1.24972 0.95292 0.94045 0.98588 1.69852 1.27581 1.16827 1.35648 0.86636 0.78480 0.79466 0.84077 1.19544 1.21035 1.20602 1.22937 1.05785 0.91576 1.02876 1.22896 1.05329 0.96096 1.00529 0.90209 0.91119 0.90168 0.88034 0.92879 0.87122 0.88523 0.77011 0.95030 0.86135 0.92447 0.91575 0.90138 0.90486 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.07 37.16 0.30 -1.61 16 2 C 0.07 0.90 3.15 -26.66 -0.08 0.82 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 O -0.37 -5.62 10.23 -48.72 -0.50 -6.12 16 5 C 0.03 0.37 7.05 37.24 0.26 0.64 16 6 C 0.00 -0.07 6.61 37.24 0.25 0.18 16 7 O -0.36 -5.98 10.59 -62.24 -0.66 -6.64 16 8 C 0.04 0.60 3.33 -27.81 -0.09 0.51 16 9 H 0.13 1.76 8.14 -51.93 -0.42 1.33 16 10 C 0.49 9.80 6.24 -10.98 -0.07 9.74 16 11 O -0.54 -12.58 13.57 -13.77 -0.19 -12.77 16 12 N -0.70 -13.84 4.33 -60.29 -0.26 -14.10 16 13 C 0.14 3.32 5.32 -4.04 -0.02 3.30 16 14 C 0.04 0.92 1.73 -155.66 -0.27 0.65 16 15 C -0.50 -12.80 8.98 -34.44 -0.31 -13.11 16 16 H 0.06 1.63 7.90 -52.48 -0.41 1.22 16 17 C 0.08 1.98 5.07 -17.82 -0.09 1.89 16 18 N -0.86 -23.73 11.07 55.43 0.61 -23.12 16 19 Si 0.89 20.27 29.59 -169.99 -5.03 15.24 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.19 -4.23 9.88 -26.73 -0.26 -4.50 16 24 C -0.21 -4.20 9.89 -26.73 -0.26 -4.47 16 25 H 0.08 0.81 7.44 -51.93 -0.39 0.42 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.15 6.66 -51.93 -0.35 0.80 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.11 2.00 5.13 -51.93 -0.27 1.74 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.40 6.88 6.52 -40.82 -0.27 6.61 16 33 H 0.03 0.74 7.96 -51.93 -0.41 0.33 16 34 H 0.12 3.28 5.39 -51.93 -0.28 3.00 16 35 H 0.27 7.02 8.32 -40.82 -0.34 6.68 16 36 H 0.07 1.39 8.09 -51.92 -0.42 0.97 16 37 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 312.73 15.07 4.71 4.71 Total: -1.00 -30.26 312.73 -7.70 -37.96 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.73 Total: 10.80 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.66 Total: -5.97 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.35 Total: -37.22 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.34 Total: -25.53 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.26 -7.70 -37.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.822 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds