Wall clock time and date at job start Mon Mar 30 2020 01:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.52808 * 2 1 4 4 O 1.43069 * 109.52474 * 239.79859 * 2 1 3 5 5 C 1.43077 * 113.59579 * 182.14223 * 4 2 1 6 6 C 1.53152 * 109.14650 * 57.95650 * 5 4 2 7 7 O 1.43196 * 109.18469 * 304.68606 * 6 5 4 8 8 C 1.43074 * 113.52088 * 57.90818 * 7 6 5 9 9 H 1.08995 * 109.53007 * 182.14005 * 8 7 6 10 10 C 1.50707 * 109.52049 * 62.01419 * 8 7 6 11 11 O 1.21277 * 120.00000 * 344.01739 * 10 8 7 12 12 N 1.34779 * 119.99559 * 164.02020 * 10 8 7 13 13 C 1.46501 * 119.99596 * 183.66690 * 12 10 8 14 14 C 1.52999 * 109.46968 * 175.10923 * 13 12 10 15 15 C 1.50701 * 115.55353 * 280.88148 * 14 13 12 16 16 H 1.08004 * 119.99993 * 144.05172 * 15 14 13 17 17 C 1.37875 * 119.99997 * 324.06332 * 15 14 13 18 18 N 1.31515 * 119.99715 * 339.33837 * 17 15 14 19 19 Si 1.86801 * 120.00340 * 159.34328 * 17 15 14 20 20 H 1.48508 * 109.46797 * 5.00009 * 19 17 15 21 21 H 1.48494 * 109.47213 * 124.99936 * 19 17 15 22 22 H 1.48498 * 109.47011 * 245.00299 * 19 17 15 23 23 C 1.53000 * 117.50002 * 135.17595 * 14 13 12 24 24 C 1.52996 * 60.00076 * 252.51120 * 23 14 13 25 25 H 1.08996 * 109.47047 * 289.31797 * 1 2 3 26 26 H 1.09005 * 109.46977 * 49.31661 * 1 2 3 27 27 H 1.08994 * 109.47145 * 169.31582 * 1 2 3 28 28 H 1.08998 * 109.52942 * 177.85360 * 5 4 2 29 29 H 1.08994 * 109.53009 * 297.99264 * 5 4 2 30 30 H 1.09001 * 109.51844 * 64.58841 * 6 5 4 31 31 H 1.08996 * 109.52159 * 184.71985 * 6 5 4 32 32 H 0.96999 * 120.00520 * 3.66076 * 12 10 8 33 33 H 1.08993 * 109.47424 * 295.10912 * 13 12 10 34 34 H 1.09001 * 109.46998 * 55.11106 * 13 12 10 35 35 H 0.97008 * 119.99840 * 185.02081 * 18 17 15 36 36 H 1.09008 * 117.49467 * 0.02562 * 23 14 13 37 37 H 1.08998 * 117.50354 * 145.02047 * 23 14 13 38 38 H 1.09003 * 117.50140 * 252.50932 * 24 23 14 39 39 H 1.09000 * 117.50369 * 107.48873 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 8 2.0082 -0.6783 -1.1654 5 6 3.4345 -0.7719 -1.2288 6 6 3.9463 -1.4965 0.0197 7 8 3.4682 -0.8181 1.1866 8 6 2.0418 -0.7245 1.2484 9 1 1.7515 -0.1661 2.1383 10 6 1.4483 -2.1085 1.3064 11 8 2.1236 -3.0708 1.0084 12 7 0.1671 -2.2767 1.6894 13 6 -0.3861 -3.6267 1.8233 14 6 -1.8074 -3.5421 2.3833 15 6 -1.9080 -3.3258 3.8713 16 1 -2.6983 -2.7105 4.2754 17 6 -0.9910 -3.9133 4.7168 18 7 -0.2984 -4.9559 4.3134 19 14 -0.7324 -3.2284 6.4354 20 1 -1.7106 -2.1396 6.6867 21 1 -0.9282 -4.3099 7.4339 22 1 0.6471 -2.6910 6.5517 23 6 -2.8805 -4.4085 1.7209 24 6 -2.8768 -2.8944 1.5014 25 1 -0.3633 0.3400 0.9698 26 1 -0.3633 0.6699 -0.7793 27 1 -0.3633 -1.0098 -0.1905 28 1 3.7237 -1.3310 -2.1186 29 1 3.8638 0.2290 -1.2719 30 1 3.5810 -2.5234 0.0202 31 1 5.0363 -1.4975 0.0190 32 1 -0.3887 -1.5041 1.8764 33 1 -0.4088 -4.1086 0.8460 34 1 0.2375 -4.2093 2.5013 35 1 0.2930 -5.4139 4.9312 36 1 -2.5737 -5.0391 0.8863 37 1 -3.6593 -4.8224 2.3613 38 1 -3.6533 -2.3120 1.9975 39 1 -2.5678 -2.5284 0.5223 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935782103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:36 Heat of formation + Delta-G solvation = -111.636312 kcal Electronic energy + Delta-G solvation = -22138.436413 eV Core-core repulsion = 18853.747246 eV Total energy + Delta-G solvation = -3284.689166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.94575 -39.65603 -38.38948 -37.09603 -35.32220 -34.25272 -33.62977 -29.99210 -28.85322 -27.74025 -26.69565 -24.26011 -23.15406 -22.84356 -21.30359 -20.92507 -18.60811 -18.17973 -17.98705 -17.46562 -17.10501 -16.75096 -16.33825 -16.21097 -15.82954 -15.44883 -15.09237 -14.57768 -14.47455 -13.83093 -13.68142 -13.47926 -13.24914 -13.19193 -12.95348 -12.86911 -12.69734 -12.67257 -12.28203 -12.11892 -12.00500 -11.52414 -11.31800 -11.18617 -10.73008 -10.64417 -10.20237 -9.76306 -9.71416 -8.14489 -6.18034 1.38305 1.44682 1.53598 1.60797 2.25065 2.39332 2.64401 2.71370 2.96804 3.43154 3.60867 3.79515 3.90373 3.99495 4.18627 4.24387 4.26392 4.36508 4.42546 4.52944 4.66904 4.70103 4.78706 4.84794 4.89926 4.96227 4.99469 5.13758 5.25143 5.27890 5.54660 5.57687 5.72948 5.81720 5.96301 6.05306 6.36687 6.69873 6.83303 7.36335 7.41591 8.86579 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.006549 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.526334 B = 4274.542156 C = 4837.507494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.070 3.930 3 H 0.107 0.893 4 O -0.395 6.395 5 C 0.031 3.969 6 C -0.009 4.009 7 O -0.371 6.371 8 C 0.040 3.960 9 H 0.155 0.845 10 C 0.485 3.515 11 O -0.583 6.583 12 N -0.691 5.691 13 C 0.156 3.844 14 C 0.011 3.989 15 C -0.506 4.506 16 H 0.064 0.936 17 C 0.030 3.970 18 N -0.897 5.897 19 Si 0.943 3.057 20 H -0.257 1.257 21 H -0.287 1.287 22 H -0.286 1.286 23 C -0.203 4.203 24 C -0.173 4.173 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.408 0.592 33 H 0.018 0.982 34 H 0.081 0.919 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.636 12.976 -8.414 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.012 3.988 3 H 0.125 0.875 4 O -0.314 6.314 5 C -0.046 4.046 6 C -0.085 4.085 7 O -0.288 6.288 8 C -0.022 4.022 9 H 0.172 0.828 10 C 0.272 3.728 11 O -0.465 6.465 12 N -0.343 5.343 13 C 0.032 3.968 14 C 0.010 3.990 15 C -0.542 4.542 16 H 0.083 0.917 17 C -0.171 4.171 18 N -0.534 5.534 19 Si 0.769 3.231 20 H -0.181 1.181 21 H -0.213 1.213 22 H -0.212 1.212 23 C -0.241 4.241 24 C -0.210 4.210 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.245 0.755 33 H 0.037 0.963 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.289 12.203 -8.557 15.509 hybrid contribution 0.026 -0.293 1.102 1.140 sum 4.315 11.910 -7.456 14.698 Atomic orbital electron populations 1.22054 0.90933 1.03563 1.05027 1.22796 0.97140 0.95984 0.82914 0.87493 1.88098 1.22163 1.78905 1.42265 1.23342 0.80717 1.01680 0.98839 1.23853 1.01196 0.98395 0.85062 1.88110 1.18363 1.77592 1.44782 1.23138 0.83014 0.92620 1.03400 0.82820 1.21784 0.82229 0.92292 0.76515 1.90502 1.60872 1.44002 1.51140 1.46132 1.11568 1.10077 1.66475 1.20850 0.95963 0.82990 0.96999 1.19163 0.86673 1.00371 0.92765 1.20736 1.12695 1.30919 0.89895 0.91740 1.25643 0.95368 0.94180 1.01925 1.70004 1.28583 1.18217 1.36616 0.85734 0.78140 0.78956 0.80229 1.18064 1.21316 1.21169 1.22943 1.05021 0.93326 1.02849 1.22896 1.03132 0.94476 1.00535 0.88223 0.89046 0.92891 0.86525 0.90161 0.90942 0.86043 0.75497 0.96320 0.90110 0.92979 0.91213 0.90803 0.89148 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.07 71.98 0.58 -2.74 16 2 C 0.07 1.67 3.15 30.64 0.10 1.76 16 3 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 4 O -0.39 -11.15 10.23 -136.08 -1.39 -12.54 16 5 C 0.03 0.71 7.05 72.03 0.51 1.22 16 6 C -0.01 -0.26 6.61 72.03 0.48 0.21 16 7 O -0.37 -11.96 10.59 -123.15 -1.30 -13.26 16 8 C 0.04 1.19 3.33 29.90 0.10 1.29 16 9 H 0.15 3.76 8.14 -2.39 -0.02 3.74 16 10 C 0.48 19.34 6.24 87.66 0.55 19.89 16 11 O -0.58 -28.20 13.57 15.47 0.21 -27.99 16 12 N -0.69 -27.25 4.33 -463.06 -2.01 -29.25 16 13 C 0.16 7.44 5.32 86.38 0.46 7.90 16 14 C 0.01 0.51 1.73 -52.93 -0.09 0.42 16 15 C -0.51 -25.63 8.98 25.60 0.23 -25.40 16 16 H 0.06 3.20 7.90 -2.91 -0.02 3.17 16 17 C 0.03 1.59 5.07 84.65 0.43 2.02 16 18 N -0.90 -50.79 11.07 21.45 0.24 -50.55 16 19 Si 0.94 41.70 29.59 68.60 2.03 43.73 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 23 C -0.20 -8.78 9.88 30.59 0.30 -8.48 16 24 C -0.17 -6.51 9.89 30.59 0.30 -6.21 16 25 H 0.10 1.65 7.44 -2.39 -0.02 1.63 16 26 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.05 1.41 6.66 -2.39 -0.02 1.40 16 28 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 2.71 5.13 -2.39 -0.01 2.69 16 31 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.41 13.61 6.52 -92.71 -0.60 13.01 16 33 H 0.02 0.91 7.96 -2.39 -0.02 0.89 16 34 H 0.08 4.60 5.39 -2.39 -0.01 4.59 16 35 H 0.26 14.31 8.32 -92.70 -0.77 13.54 16 36 H 0.07 2.92 8.09 -2.38 -0.02 2.90 16 37 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -67.29 312.73 2.16 -65.13 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.45 Total: 32.86 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 3.94 Total: -8.12 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -1.77 Total: -79.81 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -2.49 Total: -53.80 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -67.29 2.16 -65.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935782103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.509 kcal (2) G-P(sol) polarization free energy of solvation -67.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds