Wall clock time and date at job start Mon Mar 30 2020 01:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20822 * 119.99840 * 240.00038 * 12 2 1 14 14 O 1.34228 * 120.00316 * 60.00271 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 O 1.21283 * 119.99865 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99820 * 179.97438 * 16 15 14 19 19 C 1.46498 * 120.00182 * 359.97438 * 18 16 15 20 20 C 1.46500 * 119.99942 * 180.02562 * 18 16 15 21 21 C 1.53003 * 109.47582 * 89.99675 * 20 18 16 22 22 C 1.52996 * 117.49579 * 243.62500 * 21 20 18 23 23 C 1.52991 * 117.50001 * 175.00101 * 21 20 18 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 29 29 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 30 30 H 1.08995 * 109.47327 * 89.99717 * 19 18 16 31 31 H 1.09006 * 109.47078 * 210.00438 * 19 18 16 32 32 H 1.09002 * 109.47096 * 329.99936 * 19 18 16 33 33 H 1.09000 * 109.46875 * 209.99647 * 20 18 16 34 34 H 1.09006 * 109.46674 * 329.99440 * 20 18 16 35 35 H 1.09000 * 115.54232 * 29.32555 * 21 20 18 36 36 H 1.08999 * 117.50403 * 359.97438 * 22 21 20 37 37 H 1.09004 * 117.49839 * 145.02321 * 22 21 20 38 38 H 1.09000 * 117.50116 * 214.97856 * 23 21 20 39 39 H 1.09006 * 117.50019 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2267 -0.9861 -3.5897 16 6 1.7618 -0.3294 -4.8640 17 8 1.0619 0.6599 -4.8160 18 7 2.1239 -0.8415 -6.0570 19 6 2.9698 -2.0362 -6.1149 20 6 1.6725 -0.2028 -7.2957 21 6 2.6931 0.8523 -7.7270 22 6 2.2315 2.3106 -7.7576 23 6 2.4613 1.5533 -9.0669 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 3.3163 -0.9858 -3.5570 29 1 1.8625 -2.0129 -3.5567 30 1 2.3410 -2.9263 -6.1289 31 1 3.5784 -2.0069 -7.0188 32 1 3.6196 -2.0641 -5.2402 33 1 1.5754 -0.9555 -8.0781 34 1 0.7064 0.2734 -7.1278 35 1 3.7243 0.6565 -7.4330 36 1 1.2006 2.5184 -7.4709 37 1 2.9591 3.0747 -7.4838 38 1 3.3400 1.8191 -9.6546 39 1 1.5814 1.2631 -9.6412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118465773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:58 Heat of formation + Delta-G solvation = -96.494014 kcal Electronic energy + Delta-G solvation = -20515.338540 eV Core-core repulsion = 17231.305993 eV Total energy + Delta-G solvation = -3284.032547 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23848 -39.30396 -37.48522 -35.65659 -35.26610 -33.87403 -30.73316 -29.56196 -27.62067 -25.86050 -25.17459 -22.98576 -22.54263 -21.11070 -19.86270 -19.45290 -17.21365 -16.85745 -16.52664 -16.31390 -15.87194 -15.43643 -15.32031 -14.82421 -14.20707 -14.08003 -13.44006 -13.27708 -12.96395 -12.79695 -12.57078 -12.40505 -12.03736 -11.80416 -11.69891 -11.49583 -11.02549 -10.81074 -10.69589 -10.67076 -10.34117 -10.20622 -10.17456 -10.05614 -9.75042 -9.16648 -9.03192 -8.88899 -8.43236 -6.08596 -4.14714 2.50426 2.57260 3.25583 3.33564 3.36278 3.39547 3.52164 3.70387 4.40713 4.46565 4.49782 4.69801 4.74544 4.86334 5.08419 5.10798 5.23253 5.23641 5.25243 5.30419 5.39851 5.44872 5.51826 5.74541 5.90269 5.97397 6.01400 6.31411 6.71317 6.91268 6.92065 7.09560 7.19323 7.46440 7.76660 7.95698 8.10394 8.15796 8.79749 8.93435 9.50514 10.98737 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039593 B = 0.003496 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.028692 B = 8006.440462 C = 8381.765274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.066 0.934 4 C -0.515 4.515 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.467 3.533 13 O -0.518 6.518 14 O -0.342 6.342 15 C 0.046 3.954 16 C 0.517 3.483 17 O -0.507 6.507 18 N -0.619 5.619 19 C 0.073 3.927 20 C 0.148 3.852 21 C -0.173 4.173 22 C -0.169 4.169 23 C -0.178 4.178 24 H 0.096 0.904 25 H 0.026 0.974 26 H 0.031 0.969 27 H 0.264 0.736 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -2.613 -21.156 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.553 4.553 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.734 3.266 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.312 3.688 13 O -0.405 6.405 14 O -0.259 6.259 15 C -0.032 4.032 16 C 0.304 3.696 17 O -0.380 6.380 18 N -0.355 5.355 19 C -0.070 4.070 20 C 0.026 3.974 21 C -0.192 4.192 22 C -0.206 4.206 23 C -0.215 4.215 24 H 0.115 0.885 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.623 -2.265 -20.947 21.232 hybrid contribution 0.610 -0.674 0.673 1.131 sum 3.232 -2.939 -20.274 20.739 Atomic orbital electron populations 1.21743 0.95448 1.00056 1.01980 1.18776 0.95004 0.97046 0.85064 0.91617 1.21089 1.32122 1.13303 0.88748 0.90663 1.24944 0.94896 0.95015 0.99117 1.69880 1.36347 1.22719 1.23988 0.86420 0.79253 0.79640 0.81321 1.21209 1.20091 1.20091 1.25550 0.76422 0.83206 0.83652 1.90489 1.36585 1.26813 1.86651 1.86737 1.69937 1.54786 1.14454 1.22504 1.00073 0.96284 0.84349 1.20311 0.80466 0.84404 0.84399 1.90735 1.35967 1.24689 1.86620 1.47735 1.52657 1.29664 1.05464 1.21893 0.94621 0.86853 1.03607 1.21017 0.97086 0.94474 0.84825 1.22731 1.00557 0.94722 1.01219 1.23013 1.02987 0.94323 1.00302 1.22947 1.03312 1.04729 0.90553 0.88519 0.95473 0.95016 0.92595 0.88920 0.88904 0.92114 0.90683 0.90669 0.90046 0.89502 0.87784 0.88292 0.88947 0.88840 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.90 37.16 0.33 -2.98 16 2 C 0.06 1.57 2.74 -92.93 -0.25 1.32 16 3 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 4 C -0.51 -14.58 8.37 -34.44 -0.29 -14.87 16 5 H 0.08 2.19 6.76 -52.49 -0.35 1.84 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.47 11.20 7.25 36.00 0.26 11.46 16 13 O -0.52 -12.98 15.21 -18.75 -0.29 -13.26 16 14 O -0.34 -7.32 9.66 -45.90 -0.44 -7.76 16 15 C 0.05 0.74 4.50 36.01 0.16 0.90 16 16 C 0.52 7.97 7.75 -10.98 -0.09 7.89 16 17 O -0.51 -9.80 16.08 -14.10 -0.23 -10.03 16 18 N -0.62 -6.83 2.87 -181.56 -0.52 -7.35 16 19 C 0.07 0.54 10.24 59.85 0.61 1.15 16 20 C 0.15 1.42 5.69 -4.04 -0.02 1.40 16 21 C -0.17 -1.61 6.01 -90.63 -0.54 -2.15 16 22 C -0.17 -1.68 10.18 -26.73 -0.27 -1.95 16 23 C -0.18 -1.35 10.25 -26.74 -0.27 -1.62 16 24 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 25 H 0.03 0.61 8.11 -51.93 -0.42 0.18 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.09 1.34 7.39 -51.93 -0.38 0.96 16 29 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 32 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 33 H 0.08 0.56 8.07 -51.93 -0.42 0.15 16 34 H 0.09 0.98 7.15 -51.93 -0.37 0.61 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -32.85 332.69 -7.28 -40.12 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.95 Total: -0.91 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.47 Total: 2.16 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.11 Total: -31.88 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.96 Total: -31.06 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.85 -7.28 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118465773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.371 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds