Wall clock time and date at job start Mon Mar 30 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.20822 * 119.99840 * 240.00038 * 12 2 1 14 14 O 1.34228 * 120.00316 * 60.00271 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 O 1.21283 * 119.99865 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99820 * 179.97438 * 16 15 14 19 19 C 1.46498 * 120.00182 * 359.97438 * 18 16 15 20 20 C 1.46500 * 119.99942 * 180.02562 * 18 16 15 21 21 C 1.53003 * 109.47582 * 89.99675 * 20 18 16 22 22 C 1.52996 * 117.49579 * 243.62500 * 21 20 18 23 23 C 1.52991 * 117.50001 * 175.00101 * 21 20 18 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 29 29 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 30 30 H 1.08995 * 109.47327 * 89.99717 * 19 18 16 31 31 H 1.09006 * 109.47078 * 210.00438 * 19 18 16 32 32 H 1.09002 * 109.47096 * 329.99936 * 19 18 16 33 33 H 1.09000 * 109.46875 * 209.99647 * 20 18 16 34 34 H 1.09006 * 109.46674 * 329.99440 * 20 18 16 35 35 H 1.09000 * 115.54232 * 29.32555 * 21 20 18 36 36 H 1.08999 * 117.50403 * 359.97438 * 22 21 20 37 37 H 1.09004 * 117.49839 * 145.02321 * 22 21 20 38 38 H 1.09000 * 117.50116 * 214.97856 * 23 21 20 39 39 H 1.09006 * 117.50019 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7269 -1.6927 -1.1197 14 8 1.7081 -0.2516 -2.4496 15 6 2.2267 -0.9861 -3.5897 16 6 1.7618 -0.3294 -4.8640 17 8 1.0619 0.6599 -4.8160 18 7 2.1239 -0.8415 -6.0570 19 6 2.9698 -2.0362 -6.1149 20 6 1.6725 -0.2028 -7.2957 21 6 2.6931 0.8523 -7.7270 22 6 2.2315 2.3106 -7.7576 23 6 2.4613 1.5533 -9.0669 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 3.3163 -0.9858 -3.5570 29 1 1.8625 -2.0129 -3.5567 30 1 2.3410 -2.9263 -6.1289 31 1 3.5784 -2.0069 -7.0188 32 1 3.6196 -2.0641 -5.2402 33 1 1.5754 -0.9555 -8.0781 34 1 0.7064 0.2734 -7.1278 35 1 3.7243 0.6565 -7.4330 36 1 1.2006 2.5184 -7.4709 37 1 2.9591 3.0747 -7.4838 38 1 3.3400 1.8191 -9.6546 39 1 1.5814 1.2631 -9.6412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118465773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:57 Heat of formation + Delta-G solvation = -115.077724 kcal Electronic energy + Delta-G solvation = -20516.144390 eV Core-core repulsion = 17231.305993 eV Total energy + Delta-G solvation = -3284.838397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68224 -40.75512 -38.37844 -37.36169 -36.25922 -35.93802 -32.75363 -30.74664 -28.50344 -27.30020 -26.82973 -24.85394 -23.22520 -22.02385 -21.62091 -20.49498 -18.73851 -18.45549 -17.93541 -17.68937 -17.53008 -16.99568 -16.50766 -16.17168 -15.60499 -15.19828 -14.71491 -14.70676 -14.25631 -13.93687 -13.74893 -13.65661 -13.42382 -13.06984 -12.95916 -12.78727 -12.62488 -12.61242 -12.37782 -12.31360 -12.04636 -11.81034 -11.43694 -11.19647 -11.13092 -10.97994 -10.82221 -10.54038 -9.79732 -8.19748 -6.34350 1.30284 1.33544 1.40176 1.44725 1.46406 1.55333 2.23632 2.46292 2.88078 3.10300 3.36807 3.75486 3.92942 3.95790 3.99562 4.09287 4.21150 4.27679 4.37127 4.53325 4.59464 4.65988 4.76750 4.80763 4.87672 4.91218 4.96382 5.01623 5.20047 5.25353 5.27619 5.39860 5.49905 5.66558 5.85491 6.06760 6.15124 6.72130 6.93277 7.00782 7.34673 8.86959 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039593 B = 0.003496 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.028692 B = 8006.440462 C = 8381.765274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 H 0.048 0.952 4 C -0.539 4.539 5 H 0.062 0.938 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.969 3.031 9 H -0.276 1.276 10 H -0.271 1.271 11 H -0.272 1.272 12 C 0.477 3.523 13 O -0.532 6.532 14 O -0.353 6.353 15 C 0.039 3.961 16 C 0.515 3.485 17 O -0.559 6.559 18 N -0.605 5.605 19 C 0.064 3.936 20 C 0.145 3.855 21 C -0.178 4.178 22 C -0.197 4.197 23 C -0.149 4.149 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.268 0.732 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.755 -4.149 -22.596 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.031 3.969 3 H 0.065 0.935 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.793 3.207 9 H -0.201 1.201 10 H -0.196 1.196 11 H -0.197 1.197 12 C 0.322 3.678 13 O -0.421 6.421 14 O -0.269 6.269 15 C -0.038 4.038 16 C 0.303 3.697 17 O -0.436 6.436 18 N -0.339 5.339 19 C -0.078 4.078 20 C 0.023 3.977 21 C -0.197 4.197 22 C -0.234 4.234 23 C -0.186 4.186 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.094 0.906 33 H 0.136 0.864 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.509 -3.825 -22.445 23.038 hybrid contribution 0.361 -0.198 0.975 1.059 sum 3.870 -4.023 -21.470 22.184 Atomic orbital electron populations 1.21568 0.94598 1.00019 1.01732 1.18686 0.95806 0.96177 0.86180 0.93459 1.21235 1.32844 1.13445 0.90175 0.91942 1.25719 0.94825 0.95631 1.01799 1.69979 1.36636 1.23500 1.24884 0.85451 0.78762 0.78642 0.77855 1.20090 1.19610 1.19701 1.24877 0.76094 0.82667 0.84192 1.90464 1.37173 1.27313 1.87168 1.86651 1.69954 1.55433 1.14889 1.22910 1.01256 0.96762 0.82828 1.20245 0.80216 0.83915 0.85361 1.90720 1.38589 1.26946 1.87370 1.47807 1.51686 1.30036 1.04420 1.22223 0.94750 0.85625 1.05170 1.21204 0.96134 0.95522 0.84793 1.22732 1.00336 0.93861 1.02759 1.23011 1.01983 0.95107 1.03315 1.23028 1.04292 1.01814 0.89500 0.90261 0.94078 0.94825 0.92226 0.87035 0.86957 0.90383 0.87805 0.90594 0.86388 0.91702 0.87622 0.90044 0.89415 0.87276 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.90 71.98 0.64 -5.43 16 2 C 0.05 2.70 2.74 -12.29 -0.03 2.66 16 3 H 0.05 2.67 8.14 -2.39 -0.02 2.65 16 4 C -0.54 -30.93 8.37 25.60 0.21 -30.72 16 5 H 0.06 3.68 6.76 -2.91 -0.02 3.66 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -51.79 11.32 21.45 0.24 -51.55 16 8 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 9 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 C 0.48 23.02 7.25 71.24 0.52 23.54 16 13 O -0.53 -26.57 15.21 21.98 0.33 -26.24 16 14 O -0.35 -15.16 9.66 -45.04 -0.43 -15.59 16 15 C 0.04 1.23 4.50 71.24 0.32 1.55 16 16 C 0.52 15.61 7.75 87.66 0.68 16.29 16 17 O -0.56 -22.10 16.08 15.76 0.25 -21.85 16 18 N -0.61 -12.18 2.87 -846.74 -2.43 -14.61 16 19 C 0.06 0.72 10.24 127.77 1.31 2.03 16 20 C 0.15 2.51 5.69 86.38 0.49 3.00 16 21 C -0.18 -3.00 6.01 -10.80 -0.06 -3.07 16 22 C -0.20 -3.89 10.18 30.59 0.31 -3.58 16 23 C -0.15 -1.92 10.25 30.59 0.31 -1.60 16 24 H 0.08 4.24 6.07 -2.39 -0.01 4.22 16 25 H 0.04 1.88 8.11 -2.38 -0.02 1.86 16 26 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.11 3.07 7.39 -2.39 -0.02 3.05 16 29 H 0.11 3.08 8.10 -2.39 -0.02 3.06 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.65 8.07 -2.38 -0.02 0.63 16 32 H 0.08 0.89 6.44 -2.39 -0.02 0.87 16 33 H 0.12 1.20 8.07 -2.39 -0.02 1.18 16 34 H 0.06 1.45 7.15 -2.38 -0.02 1.43 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.87 8.03 -2.39 -0.02 1.85 16 37 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -71.81 332.69 6.17 -65.64 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.03 Total: 11.98 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.15 Total: 6.25 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -2.19 Total: -66.16 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: 0.15 Total: -63.68 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.81 6.17 -65.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118465773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.434 kcal (2) G-P(sol) polarization free energy of solvation -71.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds