Wall clock time and date at job start Mon Mar 30 2020 01:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09000 * 109.47407 * 2 1 4 4 C 1.50699 * 109.47691 * 120.00379 * 2 1 3 5 5 O 1.21281 * 119.99994 * 119.99327 * 4 2 1 6 6 N 1.34776 * 119.99844 * 300.00706 * 4 2 1 7 7 C 1.47069 * 136.05572 * 359.61460 * 6 4 2 8 8 C 1.53240 * 88.08123 * 207.21036 * 7 6 4 9 9 O 1.42902 * 114.01867 * 87.72097 * 8 7 6 10 10 C 1.50702 * 114.32790 * 220.46931 * 8 7 6 11 11 H 1.08004 * 119.99983 * 99.23636 * 10 8 7 12 12 C 1.37878 * 120.00438 * 279.24236 * 10 8 7 13 13 N 1.31516 * 119.99462 * 10.19089 * 12 10 8 14 14 Si 1.86794 * 120.00278 * 190.19054 * 12 10 8 15 15 H 1.48505 * 109.46830 * 84.99557 * 14 12 10 16 16 H 1.48505 * 109.47161 * 204.99312 * 14 12 10 17 17 H 1.48496 * 109.47190 * 324.99586 * 14 12 10 18 18 C 1.47071 * 136.05960 * 180.02562 * 6 4 2 19 19 C 1.53002 * 109.47162 * 240.00509 * 2 1 3 20 20 H 1.09002 * 110.27431 * 300.63592 * 19 2 1 21 21 C 1.54941 * 110.30998 * 62.83283 * 19 2 1 22 22 C 1.55307 * 100.94671 * 155.36095 * 21 19 2 23 23 C 1.54385 * 102.24742 * 325.86667 * 22 21 19 24 24 O 1.43237 * 107.58939 * 21.35441 * 23 22 21 25 25 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47345 * 299.99562 * 1 2 3 27 27 H 1.09004 * 109.47727 * 59.99388 * 1 2 3 28 28 H 1.09000 * 113.47331 * 321.94602 * 7 6 4 29 29 H 1.09006 * 113.46471 * 92.38927 * 7 6 4 30 30 H 0.96699 * 114.00069 * 90.39221 * 9 8 7 31 31 H 0.97005 * 120.00007 * 179.97438 * 13 12 10 32 32 H 1.08999 * 113.46462 * 267.61723 * 18 6 4 33 33 H 1.09001 * 113.46526 * 37.98906 * 18 6 4 34 34 H 1.08999 * 111.12657 * 273.28214 * 21 19 2 35 35 H 1.09006 * 111.12780 * 37.44416 * 21 19 2 36 36 H 1.08995 * 110.85163 * 207.67741 * 22 21 19 37 37 H 1.08996 * 111.02073 * 84.13126 * 22 21 19 38 38 H 1.08994 * 109.83021 * 261.84063 * 23 22 21 39 39 H 1.09005 * 109.90407 * 140.91090 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7067 -0.2502 2.4545 7 6 0.9212 0.8723 2.9893 8 6 1.8034 0.8258 4.2415 9 8 2.9931 1.6114 4.1442 10 6 1.0567 1.0278 5.5348 11 1 0.7803 0.1753 6.1376 12 6 0.7262 2.3008 5.9486 13 7 0.8798 3.3188 5.1303 14 14 0.0604 2.5796 7.6715 15 1 1.1920 2.7175 8.6232 16 1 -0.7572 3.8191 7.6916 17 1 -0.7829 1.4238 8.0692 18 6 1.9865 -0.6450 3.8433 19 6 2.0399 -0.7211 -1.2493 20 1 1.6746 -1.7479 -1.2683 21 6 1.5937 0.0344 -2.5263 22 6 2.6823 -0.4228 -3.5351 23 6 3.9299 -0.5512 -2.6348 24 8 3.4758 -0.7021 -1.2848 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3635 0.5139 -0.8899 28 1 1.0324 1.7924 2.4156 29 1 -0.1212 0.6191 3.1831 30 1 2.8898 2.5217 4.4535 31 1 0.6470 4.2144 5.4212 32 1 1.2310 -1.3067 4.2670 33 1 3.0013 -1.0133 3.9938 34 1 0.6022 -0.2861 -2.8461 35 1 1.6260 1.1136 -2.3758 36 1 2.8369 0.3309 -4.3071 37 1 2.4243 -1.3839 -3.9798 38 1 4.5420 0.3465 -2.7209 39 1 4.5116 -1.4248 -2.9291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119629852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:48 Heat of formation + Delta-G solvation = -99.541283 kcal Electronic energy + Delta-G solvation = -21489.675089 eV Core-core repulsion = 18205.510403 eV Total energy + Delta-G solvation = -3284.164687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00135 -39.04117 -37.20441 -34.02586 -33.67984 -32.28551 -31.90192 -28.84303 -27.71773 -25.49567 -24.99590 -24.10611 -21.87208 -21.12542 -19.75622 -18.20369 -17.32779 -16.79368 -16.16616 -15.76958 -15.36371 -14.99152 -14.94974 -14.29139 -14.07147 -13.48107 -13.13747 -13.08992 -12.80471 -12.45778 -12.25213 -12.11584 -11.82705 -11.73123 -11.57779 -11.45186 -11.08726 -11.05328 -11.00378 -10.83209 -10.75254 -10.48770 -10.24512 -9.41926 -9.31224 -8.99218 -8.82877 -8.29855 -7.73744 -6.38655 -4.47641 3.16369 3.24146 3.26156 3.36612 3.63526 3.91067 4.20373 4.42647 4.67825 4.83024 4.85264 5.03362 5.10343 5.20759 5.33611 5.43448 5.50856 5.59736 5.65376 5.68245 5.76619 5.81649 5.91213 5.96144 6.01903 6.17689 6.28508 6.30336 6.48458 6.60108 6.74052 6.79550 7.12032 7.24735 7.62531 7.81351 8.55283 8.66278 8.93644 9.23208 9.29305 10.67485 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038360 B = 0.004385 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.744900 B = 6384.449739 C = 6533.256540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.098 0.902 4 C 0.542 3.458 5 O -0.551 6.551 6 N -0.638 5.638 7 C 0.082 3.918 8 C 0.237 3.763 9 O -0.566 6.566 10 C -0.540 4.540 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.890 5.890 14 Si 0.903 3.097 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.108 3.892 19 C 0.105 3.895 20 H 0.074 0.926 21 C -0.152 4.152 22 C -0.155 4.155 23 C 0.047 3.953 24 O -0.359 6.359 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.386 0.614 31 H 0.271 0.729 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 -2.340 -12.989 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.117 0.883 4 C 0.331 3.669 5 O -0.430 6.430 6 N -0.372 5.372 7 C -0.041 4.041 8 C 0.196 3.804 9 O -0.374 6.374 10 C -0.578 4.578 11 H 0.090 0.910 12 C -0.130 4.130 13 N -0.528 5.528 14 Si 0.730 3.270 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.015 4.015 19 C 0.047 3.953 20 H 0.091 0.909 21 C -0.189 4.189 22 C -0.193 4.193 23 C -0.030 4.030 24 O -0.278 6.278 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.236 0.764 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.528 -3.317 -13.344 13.835 hybrid contribution -0.795 0.887 0.817 1.444 sum -2.323 -2.430 -12.528 12.971 Atomic orbital electron populations 1.21760 0.92375 1.02642 1.03223 1.21374 0.97264 1.01227 0.92669 0.88341 1.19793 0.80432 0.83975 0.82735 1.90651 1.39114 1.27177 1.86044 1.49735 1.51409 1.31672 1.04394 1.23993 0.96661 0.87462 0.95943 1.19500 0.83020 0.86505 0.91399 1.86106 1.34991 1.28447 1.87895 1.21364 1.37135 0.93418 1.05880 0.90985 1.25072 0.94214 0.95841 0.97874 1.69770 1.47928 1.00132 1.34946 0.86431 0.78964 0.77806 0.83826 1.20147 1.21080 1.19630 1.23255 1.00573 0.98958 0.78681 1.22704 0.81536 0.98366 0.92696 0.90850 1.23352 0.99390 1.01433 0.94758 1.23108 0.95407 1.02220 0.98559 1.23108 0.96233 1.00994 0.82683 1.88631 1.19882 1.94505 1.24822 0.92235 0.90854 0.91650 0.91729 0.90280 0.76361 0.91913 0.89850 0.91783 0.89818 0.90098 0.90226 0.90671 0.91673 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.88 37.15 0.33 -1.57 16 2 C -0.10 -1.71 2.37 -91.78 -0.22 -1.93 16 3 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 4 C 0.54 11.59 7.28 -10.99 -0.08 11.51 16 5 O -0.55 -13.53 16.17 -11.23 -0.18 -13.71 16 6 N -0.64 -13.96 3.64 -185.37 -0.67 -14.63 16 7 C 0.08 1.79 6.14 -8.63 -0.05 1.73 16 8 C 0.24 5.73 1.41 -91.41 -0.13 5.60 16 9 O -0.57 -14.56 13.56 -35.23 -0.48 -15.03 16 10 C -0.54 -13.48 8.65 -34.44 -0.30 -13.78 16 11 H 0.07 1.76 7.84 -52.48 -0.41 1.35 16 12 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 13 N -0.89 -22.28 11.81 55.43 0.65 -21.63 16 14 Si 0.90 19.27 29.55 -169.99 -5.02 14.25 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 18 C 0.11 2.43 8.03 -8.51 -0.07 2.36 16 19 C 0.10 1.58 2.46 -25.71 -0.06 1.52 16 20 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 21 C -0.15 -1.61 5.55 -24.48 -0.14 -1.75 16 22 C -0.16 -1.49 7.02 -24.78 -0.17 -1.66 16 23 C 0.05 0.58 7.79 37.88 0.30 0.88 16 24 O -0.36 -6.32 10.09 -52.02 -0.52 -6.84 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.05 6.35 -51.93 -0.33 0.72 16 27 H 0.06 0.68 7.28 -51.93 -0.38 0.30 16 28 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 29 H 0.08 1.64 8.05 -51.93 -0.42 1.22 16 30 H 0.39 9.81 7.09 45.56 0.32 10.14 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.14 16 32 H 0.08 1.72 8.10 -51.93 -0.42 1.30 16 33 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 35 H 0.08 0.83 8.06 -51.93 -0.42 0.42 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 319.30 15.07 4.81 4.81 Total: -1.00 -29.91 319.30 -7.51 -37.42 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.41 Total: 10.74 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -0.69 Total: 4.63 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.02 Total: -36.26 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.18 Total: -35.59 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.91 -7.51 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119629852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.120 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds