Wall clock time and date at job start Mon Mar 30 2020 01:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09000 * 109.47407 * 2 1 4 4 C 1.50699 * 109.47691 * 120.00379 * 2 1 3 5 5 O 1.21281 * 119.99994 * 119.99327 * 4 2 1 6 6 N 1.34776 * 119.99844 * 300.00706 * 4 2 1 7 7 C 1.47069 * 136.05572 * 359.61460 * 6 4 2 8 8 C 1.53240 * 88.08123 * 207.21036 * 7 6 4 9 9 O 1.42902 * 114.01867 * 87.72097 * 8 7 6 10 10 C 1.50702 * 114.32790 * 220.46931 * 8 7 6 11 11 H 1.08004 * 119.99983 * 99.23636 * 10 8 7 12 12 C 1.37878 * 120.00438 * 279.24236 * 10 8 7 13 13 N 1.31516 * 119.99462 * 10.19089 * 12 10 8 14 14 Si 1.86794 * 120.00278 * 190.19054 * 12 10 8 15 15 H 1.48505 * 109.46830 * 84.99557 * 14 12 10 16 16 H 1.48505 * 109.47161 * 204.99312 * 14 12 10 17 17 H 1.48496 * 109.47190 * 324.99586 * 14 12 10 18 18 C 1.47071 * 136.05960 * 180.02562 * 6 4 2 19 19 C 1.53002 * 109.47162 * 240.00509 * 2 1 3 20 20 H 1.09002 * 110.27431 * 300.63592 * 19 2 1 21 21 C 1.54941 * 110.30998 * 62.83283 * 19 2 1 22 22 C 1.55307 * 100.94671 * 155.36095 * 21 19 2 23 23 C 1.54385 * 102.24742 * 325.86667 * 22 21 19 24 24 O 1.43237 * 107.58939 * 21.35441 * 23 22 21 25 25 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47345 * 299.99562 * 1 2 3 27 27 H 1.09004 * 109.47727 * 59.99388 * 1 2 3 28 28 H 1.09000 * 113.47331 * 321.94602 * 7 6 4 29 29 H 1.09006 * 113.46471 * 92.38927 * 7 6 4 30 30 H 0.96699 * 114.00069 * 90.39221 * 9 8 7 31 31 H 0.97005 * 120.00007 * 179.97438 * 13 12 10 32 32 H 1.08999 * 113.46462 * 267.61723 * 18 6 4 33 33 H 1.09001 * 113.46526 * 37.98906 * 18 6 4 34 34 H 1.08999 * 111.12657 * 273.28214 * 21 19 2 35 35 H 1.09006 * 111.12780 * 37.44416 * 21 19 2 36 36 H 1.08995 * 110.85163 * 207.67741 * 22 21 19 37 37 H 1.08996 * 111.02073 * 84.13126 * 22 21 19 38 38 H 1.08994 * 109.83021 * 261.84063 * 23 22 21 39 39 H 1.09005 * 109.90407 * 140.91090 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7067 -0.2502 2.4545 7 6 0.9212 0.8723 2.9893 8 6 1.8034 0.8258 4.2415 9 8 2.9931 1.6114 4.1442 10 6 1.0567 1.0278 5.5348 11 1 0.7803 0.1753 6.1376 12 6 0.7262 2.3008 5.9486 13 7 0.8798 3.3188 5.1303 14 14 0.0604 2.5796 7.6715 15 1 1.1920 2.7175 8.6232 16 1 -0.7572 3.8191 7.6916 17 1 -0.7829 1.4238 8.0692 18 6 1.9865 -0.6450 3.8433 19 6 2.0399 -0.7211 -1.2493 20 1 1.6746 -1.7479 -1.2683 21 6 1.5937 0.0344 -2.5263 22 6 2.6823 -0.4228 -3.5351 23 6 3.9299 -0.5512 -2.6348 24 8 3.4758 -0.7021 -1.2848 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3635 0.5139 -0.8899 28 1 1.0324 1.7924 2.4156 29 1 -0.1212 0.6191 3.1831 30 1 2.8898 2.5217 4.4535 31 1 0.6470 4.2144 5.4212 32 1 1.2310 -1.3067 4.2670 33 1 3.0013 -1.0133 3.9938 34 1 0.6022 -0.2861 -2.8461 35 1 1.6260 1.1136 -2.3758 36 1 2.8369 0.3309 -4.3071 37 1 2.4243 -1.3839 -3.9798 38 1 4.5420 0.3465 -2.7209 39 1 4.5116 -1.4248 -2.9291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119629852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:47 Heat of formation + Delta-G solvation = -120.541038 kcal Electronic energy + Delta-G solvation = -21490.585707 eV Core-core repulsion = 18205.510403 eV Total energy + Delta-G solvation = -3285.075304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52968 -40.41228 -38.90336 -35.90948 -35.01031 -34.22217 -32.85940 -30.48191 -28.89953 -27.26857 -26.78007 -25.34415 -22.94624 -22.29927 -21.34990 -19.92462 -19.14462 -18.13954 -17.55373 -17.25043 -16.87201 -16.53919 -16.34205 -15.99065 -15.63179 -15.04042 -14.60874 -14.25944 -14.15188 -14.01616 -13.84997 -13.60972 -13.22873 -13.18243 -12.80072 -12.73654 -12.58088 -12.51303 -12.24089 -12.17021 -12.06921 -11.95659 -11.65188 -11.22950 -10.85667 -10.63382 -10.44348 -10.15990 -9.54731 -8.26460 -6.42056 1.47577 1.51799 1.59166 1.70052 1.99731 2.42144 2.86119 2.95639 3.44255 3.52643 3.69033 3.79892 3.98201 4.09543 4.12046 4.15658 4.34146 4.43178 4.46835 4.51758 4.62211 4.74816 4.82053 4.82925 4.85621 4.90767 4.94581 4.97567 5.02090 5.08959 5.20010 5.24415 5.28703 5.71362 5.90355 6.20379 6.62958 6.93806 7.21525 7.30162 7.31740 8.79403 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038360 B = 0.004385 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.744900 B = 6384.449739 C = 6533.256540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 H 0.096 0.904 4 C 0.530 3.470 5 O -0.589 6.589 6 N -0.641 5.641 7 C 0.102 3.898 8 C 0.218 3.782 9 O -0.580 6.580 10 C -0.560 4.560 11 H 0.072 0.928 12 C 0.039 3.961 13 N -0.907 5.907 14 Si 0.964 3.036 15 H -0.279 1.279 16 H -0.281 1.281 17 H -0.268 1.268 18 C 0.105 3.895 19 C 0.098 3.902 20 H 0.062 0.938 21 C -0.141 4.141 22 C -0.145 4.145 23 C 0.034 3.966 24 O -0.407 6.407 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.383 0.617 31 H 0.274 0.726 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 -1.714 -14.281 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 H 0.114 0.886 4 C 0.321 3.679 5 O -0.471 6.471 6 N -0.374 5.374 7 C -0.021 4.021 8 C 0.177 3.823 9 O -0.389 6.389 10 C -0.598 4.598 11 H 0.090 0.910 12 C -0.163 4.163 13 N -0.545 5.545 14 Si 0.789 3.211 15 H -0.204 1.204 16 H -0.206 1.206 17 H -0.192 1.192 18 C -0.018 4.018 19 C 0.040 3.960 20 H 0.080 0.920 21 C -0.179 4.179 22 C -0.182 4.182 23 C -0.043 4.043 24 O -0.327 6.327 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.234 0.766 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.207 -2.687 -14.652 15.237 hybrid contribution -0.186 0.665 1.230 1.411 sum -3.392 -2.022 -13.421 13.990 Atomic orbital electron populations 1.21760 0.89664 1.03308 1.04516 1.21468 0.99408 1.00282 0.90751 0.88621 1.20849 0.79561 0.83744 0.83701 1.90619 1.40747 1.29094 1.86623 1.49845 1.51442 1.31658 1.04468 1.23757 0.96663 0.87197 0.94443 1.19760 0.83038 0.86998 0.92487 1.86095 1.36297 1.28478 1.88028 1.21540 1.37805 0.93900 1.06533 0.90997 1.25695 0.94321 0.95476 1.00837 1.69829 1.48061 1.00428 1.36161 0.85483 0.78206 0.77763 0.79656 1.20434 1.20628 1.19199 1.23295 1.00273 0.98532 0.79726 1.22822 0.80851 0.98330 0.93971 0.92007 1.23351 1.00972 1.01237 0.92300 1.23106 0.93141 1.03736 0.98213 1.23365 0.97908 1.01443 0.81557 1.88584 1.21471 1.94698 1.27917 0.91882 0.91961 0.87898 0.92074 0.89075 0.76626 0.91617 0.88025 0.93437 0.87056 0.89436 0.87630 0.89499 0.91123 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.88 71.98 0.64 -2.66 16 2 C -0.10 -3.15 2.37 -11.54 -0.03 -3.18 16 3 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 4 C 0.53 22.98 7.28 87.66 0.64 23.62 16 5 O -0.59 -29.80 16.17 13.02 0.21 -29.59 16 6 N -0.64 -28.28 3.64 -859.27 -3.13 -31.41 16 7 C 0.10 4.41 6.14 83.09 0.51 4.92 16 8 C 0.22 10.63 1.41 -11.30 -0.02 10.61 16 9 O -0.58 -30.47 13.56 -148.98 -2.02 -32.49 16 10 C -0.56 -27.85 8.65 25.60 0.22 -27.63 16 11 H 0.07 3.49 7.84 -2.91 -0.02 3.47 16 12 C 0.04 1.89 5.21 84.65 0.44 2.33 16 13 N -0.91 -44.92 11.81 21.45 0.25 -44.67 16 14 Si 0.96 38.86 29.55 68.60 2.03 40.88 16 15 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 16 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 18 C 0.10 4.79 8.03 83.17 0.67 5.46 16 19 C 0.10 2.85 2.46 31.26 0.08 2.92 16 20 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 21 C -0.14 -2.55 5.55 32.05 0.18 -2.37 16 22 C -0.14 -2.33 7.02 31.86 0.22 -2.11 16 23 C 0.03 0.80 7.79 72.45 0.56 1.37 16 24 O -0.41 -14.37 10.09 -132.93 -1.34 -15.71 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.67 6.35 -2.38 -0.02 1.65 16 27 H 0.10 1.75 7.28 -2.38 -0.02 1.73 16 28 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.09 3.71 8.05 -2.38 -0.02 3.69 16 30 H 0.38 19.91 7.09 -74.06 -0.53 19.38 16 31 H 0.27 12.88 8.31 -92.70 -0.77 12.11 16 32 H 0.10 4.21 8.10 -2.39 -0.02 4.19 16 33 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.11 1.42 8.05 -2.39 -0.02 1.40 16 35 H 0.09 1.49 8.06 -2.38 -0.02 1.47 16 36 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -65.29 319.30 0.64 -64.65 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.52 Total: 35.05 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 4.12 Total: 13.28 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -2.87 Total: -76.08 kcal Atomic # 8 Polarization: -74.64 SS G_CDS: -3.15 Total: -77.79 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.88 kcal Total: -65.29 0.64 -64.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119629852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.888 kcal (2) G-P(sol) polarization free energy of solvation -65.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds