Wall clock time and date at job start Mon Mar 30 2020 01:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46821 * 2 1 4 4 C 1.50706 * 109.47082 * 240.00351 * 2 1 3 5 5 O 1.21281 * 119.99871 * 264.87713 * 4 2 1 6 6 N 1.34776 * 119.99970 * 84.87008 * 4 2 1 7 7 C 1.47068 * 136.05263 * 183.47248 * 6 4 2 8 8 C 1.53240 * 88.07914 * 207.20938 * 7 6 4 9 9 O 1.42901 * 114.19443 * 87.73422 * 8 7 6 10 10 C 1.50698 * 114.32666 * 220.47128 * 8 7 6 11 11 H 1.08004 * 120.00256 * 93.76033 * 10 8 7 12 12 C 1.37883 * 120.00190 * 273.76109 * 10 8 7 13 13 N 1.31517 * 119.99711 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00136 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46783 * 60.00103 * 14 12 10 16 16 H 1.48501 * 109.46921 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47022 * 300.00356 * 14 12 10 18 18 C 1.47068 * 136.05811 * 3.85604 * 6 4 2 19 19 C 1.53000 * 109.47374 * 120.00270 * 2 1 3 20 20 H 1.09003 * 109.86733 * 61.00575 * 19 2 1 21 21 C 1.54103 * 109.87551 * 300.00013 * 19 2 1 22 22 C 1.54807 * 104.18568 * 238.54239 * 21 19 2 23 23 C 1.55005 * 102.09558 * 339.12439 * 22 21 19 24 24 O 1.43736 * 109.88067 * 182.16778 * 19 2 1 25 25 H 1.08995 * 109.47102 * 186.16117 * 1 2 3 26 26 H 1.09004 * 109.46894 * 306.15988 * 1 2 3 27 27 H 1.08999 * 109.46920 * 66.15835 * 1 2 3 28 28 H 1.08992 * 113.47483 * 321.94268 * 7 6 4 29 29 H 1.09003 * 113.46378 * 92.39142 * 7 6 4 30 30 H 0.96700 * 114.00326 * 86.30409 * 9 8 7 31 31 H 0.97001 * 119.99877 * 179.97438 * 13 12 10 32 32 H 1.09001 * 113.46382 * 267.61451 * 18 6 4 33 33 H 1.08996 * 113.46644 * 37.99834 * 18 6 4 34 34 H 1.08997 * 110.49043 * 357.21974 * 21 19 2 35 35 H 1.08996 * 110.48562 * 119.86937 * 21 19 2 36 36 H 1.09004 * 110.90605 * 97.31593 * 22 21 19 37 37 H 1.08998 * 110.91128 * 220.92091 * 22 21 19 38 38 H 1.08996 * 110.61066 * 278.52049 * 23 22 21 39 39 H 1.08991 * 110.75324 * 155.58591 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 8 2.3229 -1.8866 -1.1756 6 7 2.1586 -0.0386 -2.3921 7 6 2.5367 -0.3735 -3.7733 8 6 3.0144 1.0731 -3.9386 9 8 4.3706 1.2907 -3.5444 10 6 2.6751 1.6905 -5.2708 11 1 1.7712 2.2711 -5.3824 12 6 3.5184 1.5143 -6.3473 13 7 4.6188 0.8069 -6.2116 14 14 3.0974 2.2790 -7.9988 15 1 3.0060 3.7539 -7.8523 16 1 4.1566 1.9435 -8.9840 17 1 1.7944 1.7470 -8.4728 18 6 1.9854 1.3532 -2.8347 19 6 2.0401 -0.7213 1.2492 20 1 1.6951 -1.7553 1.2467 21 6 1.5316 -0.0022 2.5137 22 6 2.8228 0.3893 3.2727 23 6 3.8624 -0.5911 2.6721 24 8 3.4765 -0.6823 1.2839 25 1 -0.3633 -1.0217 0.1103 26 1 -0.3633 0.6064 0.8297 27 1 -0.3633 0.4154 -0.9400 28 1 3.3421 -1.1051 -3.8377 29 1 1.6864 -0.6249 -4.4073 30 1 5.0164 1.1135 -4.2420 31 1 5.2119 0.6825 -6.9690 32 1 0.9867 1.5662 -3.2162 33 1 2.3220 2.0867 -2.1022 34 1 0.9629 0.8877 2.2440 35 1 0.9237 -0.6761 3.1174 36 1 3.0979 1.4233 3.0647 37 1 2.7086 0.2267 4.3444 38 1 3.7937 -1.5661 3.1545 39 1 4.8711 -0.1887 2.7645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119629854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:50 Heat of formation + Delta-G solvation = -98.382968 kcal Electronic energy + Delta-G solvation = -21497.036947 eV Core-core repulsion = 18212.922489 eV Total energy + Delta-G solvation = -3284.114458 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03355 -39.03526 -37.23175 -33.96310 -33.72165 -32.13429 -31.85677 -28.77950 -27.75999 -25.60429 -25.05857 -24.03170 -22.23317 -20.75737 -19.75148 -18.24529 -17.41433 -16.68767 -16.17459 -15.81106 -15.34646 -15.16786 -14.54785 -14.38825 -14.14770 -13.68223 -13.25651 -12.98179 -12.81542 -12.67960 -12.19880 -11.96929 -11.77104 -11.65882 -11.52242 -11.43040 -11.12119 -11.06329 -10.99957 -10.84503 -10.65101 -10.42934 -10.20247 -9.63290 -9.51419 -8.95554 -8.69660 -8.31999 -7.73265 -6.34802 -4.46157 3.18445 3.24536 3.25761 3.34288 3.63309 3.91710 4.20983 4.49923 4.65832 4.86116 4.88086 4.99344 5.00255 5.23467 5.31750 5.39273 5.54766 5.59164 5.63281 5.66503 5.71122 5.76429 5.87854 5.95519 6.02563 6.10177 6.20935 6.33387 6.36249 6.53817 6.80269 6.90082 7.06268 7.17163 7.67488 7.84954 8.55721 8.65101 8.91819 9.25011 9.55657 10.71751 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035868 B = 0.004483 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.447388 B = 6244.315282 C = 6446.658230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 H 0.094 0.906 4 C 0.546 3.454 5 O -0.556 6.556 6 N -0.635 5.635 7 C 0.079 3.921 8 C 0.240 3.760 9 O -0.572 6.572 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.909 3.091 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.101 3.899 19 C 0.096 3.904 20 H 0.077 0.923 21 C -0.152 4.152 22 C -0.155 4.155 23 C 0.044 3.956 24 O -0.360 6.360 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.394 0.606 31 H 0.274 0.726 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 1.225 13.916 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.112 0.888 4 C 0.335 3.665 5 O -0.436 6.436 6 N -0.368 5.368 7 C -0.044 4.044 8 C 0.198 3.802 9 O -0.385 6.385 10 C -0.574 4.574 11 H 0.090 0.910 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.736 3.264 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.022 4.022 19 C 0.038 3.962 20 H 0.095 0.905 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.033 4.033 24 O -0.279 6.279 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.400 0.561 14.405 15.772 hybrid contribution -0.057 0.185 -1.222 1.237 sum -6.456 0.746 13.183 14.698 Atomic orbital electron populations 1.21692 0.92203 1.02767 1.02804 1.21366 0.97162 1.01120 0.93058 0.88814 1.19728 0.77610 0.86281 0.82881 1.90625 1.51812 1.16435 1.84697 1.49701 1.66176 1.12476 1.08484 1.24059 0.98861 1.03025 0.78442 1.19474 0.81163 0.89142 0.90391 1.86024 1.16589 1.90943 1.44915 1.21390 1.08439 1.34030 0.93552 0.91028 1.25094 0.94489 0.93794 0.99709 1.69275 1.12442 1.39173 1.32770 0.86371 0.78266 0.79724 0.82026 1.19845 1.20993 1.19897 1.23364 0.99896 0.82629 0.96330 1.22562 0.81785 0.99018 0.92880 0.90544 1.23068 0.98245 1.01356 0.96310 1.23141 0.95291 1.00759 1.00127 1.23532 0.98934 0.98044 0.82814 1.89050 1.19941 1.94950 1.23936 0.91903 0.91431 0.91521 0.91911 0.90497 0.74937 0.91504 0.89750 0.91718 0.90053 0.90572 0.90451 0.90437 0.92453 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.81 37.16 0.33 -1.37 16 2 C -0.11 -1.70 2.23 -91.77 -0.20 -1.90 16 3 H 0.09 1.48 8.00 -51.93 -0.42 1.07 16 4 C 0.55 11.76 6.91 -10.98 -0.08 11.68 16 5 O -0.56 -13.88 16.81 5.56 0.09 -13.79 16 6 N -0.64 -14.12 3.69 -185.35 -0.68 -14.81 16 7 C 0.08 1.90 8.02 -8.63 -0.07 1.83 16 8 C 0.24 5.94 1.57 -91.39 -0.14 5.79 16 9 O -0.57 -15.37 13.54 -35.23 -0.48 -15.85 16 10 C -0.54 -13.58 8.69 -34.44 -0.30 -13.88 16 11 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 12 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 13 N -0.90 -23.60 11.01 55.43 0.61 -22.99 16 14 Si 0.91 19.63 29.54 -169.99 -5.02 14.61 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 C 0.10 2.09 7.75 -8.49 -0.07 2.03 16 19 C 0.10 1.44 2.54 -26.15 -0.07 1.38 16 20 H 0.08 1.22 7.85 -51.93 -0.41 0.81 16 21 C -0.15 -1.59 6.10 -25.20 -0.15 -1.74 16 22 C -0.16 -1.52 7.15 -24.72 -0.18 -1.70 16 23 C 0.04 0.54 7.72 38.22 0.30 0.83 16 24 O -0.36 -6.36 10.84 -35.23 -0.38 -6.74 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.63 6.73 -51.93 -0.35 0.28 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 29 H 0.08 1.76 8.10 -51.93 -0.42 1.34 16 30 H 0.39 10.80 6.32 45.56 0.29 11.09 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.08 1.55 8.10 -51.93 -0.42 1.12 16 33 H 0.06 1.27 8.11 -51.93 -0.42 0.85 16 34 H 0.08 0.76 6.49 -51.93 -0.34 0.42 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 320.60 15.07 4.83 4.83 Total: -1.00 -31.17 320.60 -7.17 -38.34 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.41 Total: 11.71 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.73 Total: 4.69 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.07 Total: -37.80 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.77 Total: -36.38 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.17 -7.17 -38.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119629854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.047 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds