Wall clock time and date at job start Mon Mar 30 2020 01:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46821 * 2 1 4 4 C 1.50706 * 109.47082 * 240.00351 * 2 1 3 5 5 O 1.21281 * 119.99871 * 264.87713 * 4 2 1 6 6 N 1.34776 * 119.99970 * 84.87008 * 4 2 1 7 7 C 1.47068 * 136.05263 * 183.47248 * 6 4 2 8 8 C 1.53240 * 88.07914 * 207.20938 * 7 6 4 9 9 O 1.42901 * 114.19443 * 87.73422 * 8 7 6 10 10 C 1.50698 * 114.32666 * 220.47128 * 8 7 6 11 11 H 1.08004 * 120.00256 * 93.76033 * 10 8 7 12 12 C 1.37883 * 120.00190 * 273.76109 * 10 8 7 13 13 N 1.31517 * 119.99711 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00136 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46783 * 60.00103 * 14 12 10 16 16 H 1.48501 * 109.46921 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47022 * 300.00356 * 14 12 10 18 18 C 1.47068 * 136.05811 * 3.85604 * 6 4 2 19 19 C 1.53000 * 109.47374 * 120.00270 * 2 1 3 20 20 H 1.09003 * 109.86733 * 61.00575 * 19 2 1 21 21 C 1.54103 * 109.87551 * 300.00013 * 19 2 1 22 22 C 1.54807 * 104.18568 * 238.54239 * 21 19 2 23 23 C 1.55005 * 102.09558 * 339.12439 * 22 21 19 24 24 O 1.43736 * 109.88067 * 182.16778 * 19 2 1 25 25 H 1.08995 * 109.47102 * 186.16117 * 1 2 3 26 26 H 1.09004 * 109.46894 * 306.15988 * 1 2 3 27 27 H 1.08999 * 109.46920 * 66.15835 * 1 2 3 28 28 H 1.08992 * 113.47483 * 321.94268 * 7 6 4 29 29 H 1.09003 * 113.46378 * 92.39142 * 7 6 4 30 30 H 0.96700 * 114.00326 * 86.30409 * 9 8 7 31 31 H 0.97001 * 119.99877 * 179.97438 * 13 12 10 32 32 H 1.09001 * 113.46382 * 267.61451 * 18 6 4 33 33 H 1.08996 * 113.46644 * 37.99834 * 18 6 4 34 34 H 1.08997 * 110.49043 * 357.21974 * 21 19 2 35 35 H 1.08996 * 110.48562 * 119.86937 * 21 19 2 36 36 H 1.09004 * 110.90605 * 97.31593 * 22 21 19 37 37 H 1.08998 * 110.91128 * 220.92091 * 22 21 19 38 38 H 1.08996 * 110.61066 * 278.52049 * 23 22 21 39 39 H 1.08991 * 110.75324 * 155.58591 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2306 5 8 2.3229 -1.8866 -1.1756 6 7 2.1586 -0.0386 -2.3921 7 6 2.5367 -0.3735 -3.7733 8 6 3.0144 1.0731 -3.9386 9 8 4.3706 1.2907 -3.5444 10 6 2.6751 1.6905 -5.2708 11 1 1.7712 2.2711 -5.3824 12 6 3.5184 1.5143 -6.3473 13 7 4.6188 0.8069 -6.2116 14 14 3.0974 2.2790 -7.9988 15 1 3.0060 3.7539 -7.8523 16 1 4.1566 1.9435 -8.9840 17 1 1.7944 1.7470 -8.4728 18 6 1.9854 1.3532 -2.8347 19 6 2.0401 -0.7213 1.2492 20 1 1.6951 -1.7553 1.2467 21 6 1.5316 -0.0022 2.5137 22 6 2.8228 0.3893 3.2727 23 6 3.8624 -0.5911 2.6721 24 8 3.4765 -0.6823 1.2839 25 1 -0.3633 -1.0217 0.1103 26 1 -0.3633 0.6064 0.8297 27 1 -0.3633 0.4154 -0.9400 28 1 3.3421 -1.1051 -3.8377 29 1 1.6864 -0.6249 -4.4073 30 1 5.0164 1.1135 -4.2420 31 1 5.2119 0.6825 -6.9690 32 1 0.9867 1.5662 -3.2162 33 1 2.3220 2.0867 -2.1022 34 1 0.9629 0.8877 2.2440 35 1 0.9237 -0.6761 3.1174 36 1 3.0979 1.4233 3.0647 37 1 2.7086 0.2267 4.3444 38 1 3.7937 -1.5661 3.1545 39 1 4.8711 -0.1887 2.7645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119629854.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:49 Heat of formation + Delta-G solvation = -121.887066 kcal Electronic energy + Delta-G solvation = -21498.056162 eV Core-core repulsion = 18212.922489 eV Total energy + Delta-G solvation = -3285.133673 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54018 -40.44108 -38.94381 -35.90397 -35.00017 -34.13159 -32.81491 -30.49901 -28.84939 -27.37280 -26.86023 -25.25880 -23.28222 -22.09946 -21.22576 -19.94160 -19.25042 -18.22550 -17.51204 -17.06742 -16.96138 -16.67673 -16.17534 -15.97537 -15.79156 -14.88131 -14.59315 -14.53541 -14.27935 -14.19912 -13.73930 -13.42041 -13.25024 -12.97360 -12.82728 -12.75113 -12.58710 -12.41463 -12.23606 -12.19085 -12.11153 -11.96245 -11.49320 -11.44160 -10.80242 -10.66352 -10.54032 -10.27609 -9.56859 -8.27019 -6.46096 1.49123 1.49657 1.58441 1.68577 1.98005 2.40499 2.89930 2.95229 3.42389 3.58689 3.73491 3.81612 3.96256 4.09561 4.10760 4.20743 4.32699 4.41641 4.49702 4.58315 4.62178 4.73003 4.76345 4.79886 4.84204 4.88990 4.91049 4.95706 5.03892 5.15088 5.19548 5.23061 5.26086 5.72228 5.88557 6.03479 6.61835 6.93094 7.19066 7.28621 7.44337 8.79150 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035868 B = 0.004483 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.447388 B = 6244.315282 C = 6446.658230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 H 0.099 0.901 4 C 0.533 3.467 5 O -0.602 6.602 6 N -0.640 5.640 7 C 0.077 3.923 8 C 0.216 3.784 9 O -0.587 6.587 10 C -0.550 4.550 11 H 0.086 0.914 12 C 0.024 3.976 13 N -0.926 5.926 14 Si 0.977 3.023 15 H -0.266 1.266 16 H -0.287 1.287 17 H -0.266 1.266 18 C 0.118 3.882 19 C 0.088 3.912 20 H 0.057 0.943 21 C -0.141 4.141 22 C -0.146 4.146 23 C 0.031 3.969 24 O -0.411 6.411 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.025 0.975 29 H 0.086 0.914 30 H 0.387 0.613 31 H 0.275 0.725 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.788 3.136 15.285 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 H 0.118 0.882 4 C 0.325 3.675 5 O -0.484 6.484 6 N -0.373 5.373 7 C -0.047 4.047 8 C 0.175 3.825 9 O -0.399 6.399 10 C -0.588 4.588 11 H 0.104 0.896 12 C -0.176 4.176 13 N -0.567 5.567 14 Si 0.801 3.199 15 H -0.191 1.191 16 H -0.213 1.213 17 H -0.191 1.191 18 C -0.004 4.004 19 C 0.030 3.970 20 H 0.075 0.925 21 C -0.179 4.179 22 C -0.183 4.183 23 C -0.045 4.045 24 O -0.331 6.331 25 H 0.078 0.922 26 H 0.127 0.873 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.104 0.896 30 H 0.242 0.758 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.126 0.874 38 H 0.083 0.917 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.643 2.496 15.802 18.183 hybrid contribution 0.712 -0.490 -1.634 1.848 sum -7.931 2.006 14.168 16.361 Atomic orbital electron populations 1.21737 0.88988 1.03569 1.04528 1.21491 0.99614 1.00393 0.90336 0.88248 1.20937 0.76496 0.86140 0.83933 1.90589 1.53666 1.18693 1.85445 1.49830 1.66247 1.13172 1.08009 1.23957 0.98154 1.02019 0.80559 1.19845 0.80847 0.89528 0.92276 1.86007 1.17821 1.91082 1.45037 1.21716 1.09016 1.34155 0.93887 0.89640 1.25935 0.94299 0.94097 1.03234 1.69380 1.13388 1.40285 1.33637 0.85316 0.77981 0.79016 0.77579 1.19079 1.21311 1.19113 1.23356 1.00082 0.81940 0.95043 1.22700 0.81036 0.98621 0.94620 0.92519 1.23066 0.98782 1.02008 0.94026 1.23132 0.93705 0.99909 1.01590 1.23815 1.00188 0.99540 0.80994 1.89001 1.21642 1.95197 1.27224 0.92153 0.87346 0.91576 0.95646 0.89582 0.75771 0.91530 0.86559 0.90317 0.88128 0.88275 0.90266 0.87429 0.91676 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.81 71.98 0.63 -2.21 16 2 C -0.10 -2.98 2.23 -11.54 -0.03 -3.01 16 3 H 0.10 2.93 8.00 -2.39 -0.02 2.91 16 4 C 0.53 23.27 6.91 87.66 0.61 23.88 16 5 O -0.60 -31.27 16.81 -3.03 -0.05 -31.32 16 6 N -0.64 -28.64 3.69 -859.19 -3.17 -31.81 16 7 C 0.08 3.83 8.02 83.10 0.67 4.49 16 8 C 0.22 10.78 1.57 -11.29 -0.02 10.76 16 9 O -0.59 -32.47 13.54 -148.98 -2.02 -34.48 16 10 C -0.55 -27.57 8.69 25.60 0.22 -27.34 16 11 H 0.09 3.95 7.81 -2.91 -0.02 3.93 16 12 C 0.02 1.21 5.39 84.66 0.46 1.67 16 13 N -0.93 -49.81 11.01 21.45 0.24 -49.57 16 14 Si 0.98 39.81 29.54 68.60 2.03 41.84 16 15 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 16 H -0.29 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 18 C 0.12 4.72 7.75 83.19 0.64 5.37 16 19 C 0.09 2.57 2.54 30.97 0.08 2.65 16 20 H 0.06 1.82 7.85 -2.39 -0.02 1.81 16 21 C -0.14 -2.45 6.10 31.58 0.19 -2.25 16 22 C -0.15 -2.39 7.15 31.90 0.23 -2.16 16 23 C 0.03 0.72 7.72 72.67 0.56 1.29 16 24 O -0.41 -14.65 10.84 -148.98 -1.61 -16.26 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.11 1.49 6.73 -2.38 -0.02 1.48 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.09 4.03 8.10 -2.39 -0.02 4.02 16 30 H 0.39 22.12 6.32 -74.06 -0.47 21.65 16 31 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.12 3.92 8.10 -2.39 -0.02 3.90 16 33 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 34 H 0.10 1.37 6.49 -2.39 -0.02 1.36 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -70.84 320.60 0.23 -70.60 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.58 Total: 37.89 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 4.25 Total: 13.12 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.94 Total: -81.39 kcal Atomic # 8 Polarization: -78.38 SS G_CDS: -3.68 Total: -82.07 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -70.84 0.23 -70.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119629854.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.284 kcal (2) G-P(sol) polarization free energy of solvation -70.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds