Wall clock time and date at job start Mon Mar 30 2020 01:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47460 * 2 1 4 4 C 1.50701 * 109.46727 * 240.00016 * 2 1 3 5 5 O 1.21276 * 119.99990 * 263.64526 * 4 2 1 6 6 N 1.34777 * 119.99972 * 83.65658 * 4 2 1 7 7 C 1.47071 * 136.05594 * 183.10769 * 6 4 2 8 8 C 1.53237 * 88.08097 * 207.19441 * 7 6 4 9 9 O 1.42895 * 114.01651 * 87.71597 * 8 7 6 10 10 C 1.50700 * 114.32528 * 220.47062 * 8 7 6 11 11 H 1.07999 * 120.00354 * 93.76070 * 10 8 7 12 12 C 1.37884 * 119.99782 * 273.75760 * 10 8 7 13 13 N 1.31513 * 119.99937 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99809 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47143 * 60.00411 * 14 12 10 16 16 H 1.48497 * 109.46836 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47317 * 300.00431 * 14 12 10 18 18 C 1.47063 * 136.05870 * 3.46322 * 6 4 2 19 19 C 1.53001 * 109.47304 * 120.00248 * 2 1 3 20 20 H 1.08999 * 109.87103 * 178.99085 * 19 2 1 21 21 C 1.54104 * 109.87640 * 300.00034 * 19 2 1 22 22 C 1.54807 * 104.18754 * 121.45325 * 21 19 2 23 23 C 1.54997 * 102.09567 * 20.87591 * 22 21 19 24 24 O 1.43748 * 109.87742 * 57.82807 * 19 2 1 25 25 H 1.09001 * 109.46561 * 306.25431 * 1 2 3 26 26 H 1.08996 * 109.47054 * 66.25075 * 1 2 3 27 27 H 1.08997 * 109.47125 * 186.25177 * 1 2 3 28 28 H 1.08999 * 113.46852 * 321.93169 * 7 6 4 29 29 H 1.08997 * 113.46528 * 92.37006 * 7 6 4 30 30 H 0.96695 * 114.00182 * 86.38687 * 9 8 7 31 31 H 0.96996 * 119.99895 * 179.97438 * 13 12 10 32 32 H 1.08997 * 113.47092 * 267.63303 * 18 6 4 33 33 H 1.08998 * 113.46735 * 38.01475 * 18 6 4 34 34 H 1.08998 * 110.48606 * 240.12540 * 21 19 2 35 35 H 1.08999 * 110.48609 * 2.77724 * 21 19 2 36 36 H 1.09002 * 110.90764 * 139.07860 * 22 21 19 37 37 H 1.09006 * 110.90553 * 262.64463 * 22 21 19 38 38 H 1.09001 * 110.61360 * 81.48014 * 23 22 21 39 39 H 1.08995 * 110.61822 * 204.31484 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3440 -1.8809 -1.1702 6 7 2.1353 -0.0450 -2.3980 7 6 2.5116 -0.3818 -3.7793 8 6 2.9547 1.0741 -3.9590 9 8 4.3084 1.3216 -3.5744 10 6 2.5920 1.6731 -5.2934 11 1 1.6743 2.2318 -5.4030 12 6 3.4319 1.5079 -6.3743 13 7 4.5492 0.8271 -6.2409 14 14 2.9827 2.2510 -8.0282 15 1 2.8594 3.7246 -7.8917 16 1 4.0431 1.9332 -9.0180 17 1 1.6889 1.6867 -8.4895 18 6 1.9269 1.3389 -2.8500 19 6 2.0401 -0.7213 1.2492 20 1 3.1299 -0.7407 1.2468 21 6 1.5316 -0.0022 2.5138 22 6 0.7321 -1.0891 3.2727 23 6 1.3098 -2.3960 2.6722 24 8 1.5244 -2.0626 1.2839 25 1 -0.3632 0.6078 0.8287 26 1 -0.3633 0.4139 -0.9406 27 1 -0.3633 -1.0215 0.1119 28 1 3.3331 -1.0952 -3.8437 29 1 1.6630 -0.6577 -4.4053 30 1 4.9533 1.1539 -4.2752 31 1 5.1398 0.7106 -7.0014 32 1 0.9211 1.5260 -3.2261 33 1 2.2515 2.0857 -2.1255 34 1 2.3696 0.3462 3.1175 35 1 0.8821 0.8305 2.2439 36 1 0.9235 -1.0356 4.3444 37 1 -0.3346 -1.0033 3.0652 38 1 2.2519 -2.6563 3.1545 39 1 0.5931 -3.2117 2.7673 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119629856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:52 Heat of formation + Delta-G solvation = -95.927935 kcal Electronic energy + Delta-G solvation = -21472.754233 eV Core-core repulsion = 18188.746233 eV Total energy + Delta-G solvation = -3284.008000 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07278 -39.05585 -37.16143 -33.96091 -33.48015 -32.15835 -31.85089 -28.77809 -27.83974 -25.61746 -25.06539 -24.19170 -22.06173 -20.81676 -19.70571 -18.16111 -17.36749 -16.53886 -16.21335 -15.89689 -15.22802 -15.19523 -14.53692 -14.45716 -14.17565 -13.75142 -13.25612 -12.97692 -12.74634 -12.67562 -12.06381 -11.89981 -11.74913 -11.64138 -11.51492 -11.43492 -11.13167 -11.04121 -10.96035 -10.85092 -10.62432 -10.44373 -10.22214 -9.61750 -9.48123 -8.92987 -8.69741 -8.33428 -7.72925 -6.36490 -4.47589 3.17718 3.23853 3.25171 3.34545 3.63866 3.97538 4.19994 4.48139 4.69078 4.86510 4.88183 4.99824 5.01321 5.17706 5.29047 5.43621 5.54652 5.60117 5.62821 5.68315 5.71323 5.88167 5.93076 5.98510 6.01546 6.09219 6.27648 6.34922 6.37639 6.53172 6.79760 6.88628 7.09731 7.15592 7.65966 7.83135 8.54478 8.65524 8.95374 9.23595 9.51882 10.70124 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.048307 B = 0.004141 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.483107 B = 6759.838192 C = 6881.398205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 H 0.096 0.904 4 C 0.537 3.463 5 O -0.541 6.541 6 N -0.638 5.638 7 C 0.079 3.921 8 C 0.240 3.760 9 O -0.573 6.573 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.909 3.091 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.101 3.899 19 C 0.096 3.904 20 H 0.068 0.932 21 C -0.153 4.153 22 C -0.154 4.154 23 C 0.040 3.960 24 O -0.342 6.342 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.394 0.606 31 H 0.275 0.725 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 0.610 13.927 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 H 0.115 0.885 4 C 0.325 3.675 5 O -0.418 6.418 6 N -0.372 5.372 7 C -0.043 4.043 8 C 0.198 3.802 9 O -0.387 6.387 10 C -0.574 4.574 11 H 0.090 0.910 12 C -0.131 4.131 13 N -0.537 5.537 14 Si 0.736 3.264 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.022 4.022 19 C 0.038 3.962 20 H 0.086 0.914 21 C -0.191 4.191 22 C -0.191 4.191 23 C -0.038 4.038 24 O -0.260 6.260 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.251 0.749 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.967 -0.184 14.424 16.020 hybrid contribution 0.109 0.342 -1.220 1.272 sum -6.857 0.158 13.205 14.880 Atomic orbital electron populations 1.21641 0.92582 1.03112 1.01917 1.21441 0.98209 1.00020 0.92887 0.88547 1.19834 0.78222 0.86444 0.82970 1.90683 1.50300 1.16172 1.84670 1.49777 1.66178 1.13037 1.08257 1.24046 0.98907 1.02895 0.78469 1.19488 0.81144 0.89102 0.90493 1.86000 1.16945 1.90591 1.45127 1.21388 1.07441 1.35337 0.93249 0.91008 1.25090 0.94508 0.93728 0.99750 1.69264 1.11792 1.39998 1.32640 0.86368 0.78323 0.79679 0.82010 1.19847 1.20993 1.19876 1.23349 0.99887 0.82800 0.96136 1.22463 0.97789 0.82966 0.92992 0.91369 1.23066 1.00524 0.99199 0.96315 1.23125 1.00664 0.95280 1.00068 1.23538 0.99590 0.97099 0.83536 1.89153 1.85030 1.29060 1.22792 0.91970 0.92215 0.91309 0.91962 0.90569 0.74894 0.91500 0.89798 0.91783 0.90653 0.89998 0.90592 0.90609 0.92610 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.73 37.16 0.32 -1.49 16 2 C -0.10 -1.65 2.35 -91.77 -0.22 -1.86 16 3 H 0.10 1.39 8.07 -51.93 -0.42 0.97 16 4 C 0.54 11.40 7.18 -10.98 -0.08 11.32 16 5 O -0.54 -13.46 15.96 -14.65 -0.23 -13.70 16 6 N -0.64 -13.95 3.69 -185.38 -0.68 -14.63 16 7 C 0.08 1.90 8.01 -8.64 -0.07 1.83 16 8 C 0.24 5.83 1.57 -91.39 -0.14 5.69 16 9 O -0.57 -15.02 13.53 -35.23 -0.48 -15.50 16 10 C -0.54 -13.48 8.69 -34.44 -0.30 -13.78 16 11 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.07 1.82 5.40 -17.82 -0.10 1.72 16 13 N -0.90 -23.38 11.01 55.43 0.61 -22.77 16 14 Si 0.91 19.54 29.54 -169.99 -5.02 14.52 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 C 0.10 2.06 7.78 -8.51 -0.07 2.00 16 19 C 0.10 1.42 2.90 -26.15 -0.08 1.34 16 20 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 21 C -0.15 -1.58 6.20 -25.20 -0.16 -1.74 16 22 C -0.15 -1.41 7.15 -24.72 -0.18 -1.59 16 23 C 0.04 0.46 7.72 38.21 0.29 0.75 16 24 O -0.34 -5.65 8.96 -55.44 -0.50 -6.15 16 25 H 0.06 0.65 6.61 -51.93 -0.34 0.31 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.01 7.45 -51.93 -0.39 0.62 16 28 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 30 H 0.39 10.58 6.33 45.56 0.29 10.87 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.76 6.26 -51.93 -0.33 0.43 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -30.44 318.02 -7.65 -38.08 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.38 Total: 11.16 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -0.76 Total: 4.19 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.07 Total: -37.40 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -1.21 Total: -35.35 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.44 -7.65 -38.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119629856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.844 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds