Wall clock time and date at job start Mon Mar 30 2020 01:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47460 * 2 1 4 4 C 1.50701 * 109.46727 * 240.00016 * 2 1 3 5 5 O 1.21276 * 119.99990 * 263.64526 * 4 2 1 6 6 N 1.34777 * 119.99972 * 83.65658 * 4 2 1 7 7 C 1.47071 * 136.05594 * 183.10769 * 6 4 2 8 8 C 1.53237 * 88.08097 * 207.19441 * 7 6 4 9 9 O 1.42895 * 114.01651 * 87.71597 * 8 7 6 10 10 C 1.50700 * 114.32528 * 220.47062 * 8 7 6 11 11 H 1.07999 * 120.00354 * 93.76070 * 10 8 7 12 12 C 1.37884 * 119.99782 * 273.75760 * 10 8 7 13 13 N 1.31513 * 119.99937 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99809 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47143 * 60.00411 * 14 12 10 16 16 H 1.48497 * 109.46836 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47317 * 300.00431 * 14 12 10 18 18 C 1.47063 * 136.05870 * 3.46322 * 6 4 2 19 19 C 1.53001 * 109.47304 * 120.00248 * 2 1 3 20 20 H 1.08999 * 109.87103 * 178.99085 * 19 2 1 21 21 C 1.54104 * 109.87640 * 300.00034 * 19 2 1 22 22 C 1.54807 * 104.18754 * 121.45325 * 21 19 2 23 23 C 1.54997 * 102.09567 * 20.87591 * 22 21 19 24 24 O 1.43748 * 109.87742 * 57.82807 * 19 2 1 25 25 H 1.09001 * 109.46561 * 306.25431 * 1 2 3 26 26 H 1.08996 * 109.47054 * 66.25075 * 1 2 3 27 27 H 1.08997 * 109.47125 * 186.25177 * 1 2 3 28 28 H 1.08999 * 113.46852 * 321.93169 * 7 6 4 29 29 H 1.08997 * 113.46528 * 92.37006 * 7 6 4 30 30 H 0.96695 * 114.00182 * 86.38687 * 9 8 7 31 31 H 0.96996 * 119.99895 * 179.97438 * 13 12 10 32 32 H 1.08997 * 113.47092 * 267.63303 * 18 6 4 33 33 H 1.08998 * 113.46735 * 38.01475 * 18 6 4 34 34 H 1.08998 * 110.48606 * 240.12540 * 21 19 2 35 35 H 1.08999 * 110.48609 * 2.77724 * 21 19 2 36 36 H 1.09002 * 110.90764 * 139.07860 * 22 21 19 37 37 H 1.09006 * 110.90553 * 262.64463 * 22 21 19 38 38 H 1.09001 * 110.61360 * 81.48014 * 23 22 21 39 39 H 1.08995 * 110.61822 * 204.31484 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3440 -1.8809 -1.1702 6 7 2.1353 -0.0450 -2.3980 7 6 2.5116 -0.3818 -3.7793 8 6 2.9547 1.0741 -3.9590 9 8 4.3084 1.3216 -3.5744 10 6 2.5920 1.6731 -5.2934 11 1 1.6743 2.2318 -5.4030 12 6 3.4319 1.5079 -6.3743 13 7 4.5492 0.8271 -6.2409 14 14 2.9827 2.2510 -8.0282 15 1 2.8594 3.7246 -7.8917 16 1 4.0431 1.9332 -9.0180 17 1 1.6889 1.6867 -8.4895 18 6 1.9269 1.3389 -2.8500 19 6 2.0401 -0.7213 1.2492 20 1 3.1299 -0.7407 1.2468 21 6 1.5316 -0.0022 2.5138 22 6 0.7321 -1.0891 3.2727 23 6 1.3098 -2.3960 2.6722 24 8 1.5244 -2.0626 1.2839 25 1 -0.3632 0.6078 0.8287 26 1 -0.3633 0.4139 -0.9406 27 1 -0.3633 -1.0215 0.1119 28 1 3.3331 -1.0952 -3.8437 29 1 1.6630 -0.6577 -4.4053 30 1 4.9533 1.1539 -4.2752 31 1 5.1398 0.7106 -7.0014 32 1 0.9211 1.5260 -3.2261 33 1 2.2515 2.0857 -2.1255 34 1 2.3696 0.3462 3.1175 35 1 0.8821 0.8305 2.2439 36 1 0.9235 -1.0356 4.3444 37 1 -0.3346 -1.0033 3.0652 38 1 2.2519 -2.6563 3.1545 39 1 0.5931 -3.2117 2.7673 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119629856.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:51 Heat of formation + Delta-G solvation = -117.330144 kcal Electronic energy + Delta-G solvation = -21473.682302 eV Core-core repulsion = 18188.746233 eV Total energy + Delta-G solvation = -3284.936070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.52907 -40.45003 -38.84994 -35.87902 -34.74035 -34.12816 -32.75991 -30.45195 -28.94652 -27.37134 -26.83855 -25.41405 -23.08390 -22.09758 -21.21065 -19.85208 -19.17481 -17.98371 -17.57468 -17.15380 -16.92118 -16.43282 -16.11778 -15.95405 -15.90826 -14.87804 -14.67041 -14.51358 -14.27194 -14.13254 -13.71885 -13.41384 -13.11609 -12.88779 -12.80690 -12.74857 -12.50439 -12.41370 -12.23103 -12.17435 -12.08864 -11.92173 -11.45778 -11.40577 -10.78086 -10.57418 -10.49349 -10.25643 -9.53820 -8.27072 -6.45712 1.49199 1.49566 1.58237 1.71051 2.00262 2.40657 2.95357 2.98099 3.49078 3.58622 3.76742 3.84681 3.97800 4.04918 4.13591 4.18873 4.36145 4.43947 4.51623 4.61050 4.67821 4.74121 4.78606 4.85680 4.88081 4.91554 4.92122 4.97799 5.04351 5.16098 5.24499 5.25814 5.30182 5.72612 5.88949 6.11065 6.62101 6.95982 7.25187 7.29138 7.44550 8.78908 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.048307 B = 0.004141 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.483107 B = 6759.838192 C = 6881.398205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 H 0.116 0.884 4 C 0.525 3.475 5 O -0.588 6.588 6 N -0.641 5.641 7 C 0.077 3.923 8 C 0.217 3.783 9 O -0.585 6.585 10 C -0.551 4.551 11 H 0.084 0.916 12 C 0.025 3.975 13 N -0.925 5.925 14 Si 0.975 3.025 15 H -0.266 1.266 16 H -0.287 1.287 17 H -0.268 1.268 18 C 0.118 3.882 19 C 0.089 3.911 20 H 0.043 0.957 21 C -0.144 4.144 22 C -0.142 4.142 23 C 0.027 3.973 24 O -0.383 6.383 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.026 0.974 29 H 0.081 0.919 30 H 0.387 0.613 31 H 0.275 0.725 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.021 2.636 15.314 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.134 0.866 4 C 0.316 3.684 5 O -0.468 6.468 6 N -0.375 5.375 7 C -0.047 4.047 8 C 0.176 3.824 9 O -0.398 6.398 10 C -0.589 4.589 11 H 0.102 0.898 12 C -0.175 4.175 13 N -0.566 5.566 14 Si 0.800 3.200 15 H -0.191 1.191 16 H -0.213 1.213 17 H -0.193 1.193 18 C -0.004 4.004 19 C 0.030 3.970 20 H 0.061 0.939 21 C -0.181 4.181 22 C -0.180 4.180 23 C -0.049 4.049 24 O -0.303 6.303 25 H 0.120 0.880 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.243 0.757 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.030 1.865 15.839 18.327 hybrid contribution 0.796 -0.384 -1.642 1.865 sum -8.234 1.481 14.197 16.479 Atomic orbital electron populations 1.21632 0.90319 1.02907 1.03567 1.21547 0.99856 1.00181 0.90188 0.86576 1.21017 0.77057 0.86274 0.84012 1.90650 1.52226 1.18526 1.85438 1.49896 1.66168 1.13741 1.07690 1.23942 0.98031 1.02142 0.80616 1.19828 0.81003 0.89294 0.92304 1.85982 1.17985 1.90699 1.45146 1.21722 1.07981 1.35440 0.93723 0.89757 1.25909 0.94387 0.94013 1.03186 1.69367 1.12709 1.41034 1.33465 0.85338 0.77935 0.79066 0.77698 1.19058 1.21288 1.19267 1.23332 0.99883 0.82224 0.94954 1.22552 0.96575 0.83197 0.94645 0.93908 1.23052 1.01483 0.99460 0.94124 1.23107 1.00770 0.92877 1.01215 1.23802 1.00308 0.99027 0.81770 1.89117 1.85153 1.30165 1.25840 0.88001 0.92250 0.92998 0.95526 0.90095 0.75728 0.91530 0.87028 0.89747 0.89143 0.88096 0.87981 0.89689 0.92409 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.73 71.98 0.63 -2.43 16 2 C -0.10 -2.91 2.35 -11.54 -0.03 -2.93 16 3 H 0.12 3.01 8.07 -2.39 -0.02 2.99 16 4 C 0.53 22.53 7.18 87.66 0.63 23.16 16 5 O -0.59 -30.49 15.96 16.31 0.26 -30.23 16 6 N -0.64 -28.07 3.69 -859.28 -3.17 -31.24 16 7 C 0.08 3.77 8.01 83.09 0.67 4.43 16 8 C 0.22 10.60 1.57 -11.29 -0.02 10.58 16 9 O -0.59 -31.31 13.53 -148.98 -2.02 -33.33 16 10 C -0.55 -27.38 8.69 25.60 0.22 -27.16 16 11 H 0.08 3.88 7.81 -2.91 -0.02 3.86 16 12 C 0.02 1.25 5.40 84.66 0.46 1.70 16 13 N -0.92 -49.15 11.01 21.45 0.24 -48.92 16 14 Si 0.98 39.62 29.54 68.60 2.03 41.65 16 15 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 16 H -0.29 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 18 C 0.12 4.60 7.78 83.18 0.65 5.25 16 19 C 0.09 2.53 2.90 30.97 0.09 2.62 16 20 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 21 C -0.14 -2.47 6.20 31.58 0.20 -2.28 16 22 C -0.14 -2.12 7.15 31.89 0.23 -1.89 16 23 C 0.03 0.59 7.72 72.67 0.56 1.15 16 24 O -0.38 -12.68 8.96 -129.65 -1.16 -13.84 16 25 H 0.10 1.65 6.61 -2.39 -0.02 1.64 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.44 7.45 -2.39 -0.02 1.42 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 3.82 8.10 -2.39 -0.02 3.80 16 30 H 0.39 21.54 6.33 -74.06 -0.47 21.07 16 31 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.11 3.74 8.10 -2.39 -0.02 3.72 16 33 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.37 6.26 -2.39 -0.01 1.35 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -68.72 318.02 1.03 -67.69 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.58 Total: 35.99 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 4.28 Total: 12.22 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -2.94 Total: -80.15 kcal Atomic # 8 Polarization: -74.48 SS G_CDS: -2.92 Total: -77.39 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -68.72 1.03 -67.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119629856.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.641 kcal (2) G-P(sol) polarization free energy of solvation -68.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds