Wall clock time and date at job start Mon Mar 30 2020 01:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.50703 * 109.47376 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99813 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46904 * 90.00279 * 10 8 6 12 12 H 1.48501 * 109.47144 * 210.00274 * 10 8 6 13 13 H 1.48493 * 109.47125 * 330.00250 * 10 8 6 14 14 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 15 15 C 1.46897 * 111.00355 * 84.99974 * 14 2 1 16 16 C 1.50696 * 109.47624 * 179.97438 * 15 14 2 17 17 C 1.38224 * 119.98916 * 259.73288 * 16 15 14 18 18 C 1.38190 * 120.05172 * 179.72589 * 17 16 15 19 19 C 1.38502 * 120.02098 * 0.54359 * 18 17 16 20 20 F 1.35096 * 120.00947 * 179.75198 * 19 18 17 21 21 C 1.38400 * 119.97228 * 359.72666 * 19 18 17 22 22 C 1.38433 * 119.95367 * 359.97438 * 21 19 18 23 23 F 1.35100 * 120.01335 * 179.97438 * 22 21 19 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 28 28 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 29 29 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 30 30 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 31 31 H 0.96995 * 119.99701 * 179.97438 * 9 8 6 32 32 H 1.00901 * 110.99869 * 321.04664 * 14 2 1 33 33 H 1.09006 * 109.46948 * 300.00869 * 15 14 2 34 34 H 1.09006 * 109.47033 * 59.99701 * 15 14 2 35 35 H 1.08001 * 119.97240 * 359.96945 * 17 16 15 36 36 H 1.07999 * 119.99229 * 180.25005 * 18 17 16 37 37 H 1.08004 * 120.01753 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0672 -1.3242 2.5440 7 1 3.3687 -1.8053 3.2127 8 6 5.4185 -1.3614 2.8152 9 7 6.2690 -0.7760 2.0007 10 14 6.0410 -2.2420 4.3405 11 1 6.3204 -3.6631 4.0121 12 1 7.2877 -1.5892 4.8148 13 1 5.0100 -2.1738 5.4069 14 7 2.0198 -0.6925 -1.1994 15 6 2.0826 0.2225 -2.3469 16 6 2.5887 -0.5215 -3.5557 17 6 3.9113 -0.3995 -3.9384 18 6 4.3781 -1.0857 -5.0433 19 6 3.5183 -1.8877 -5.7752 20 9 3.9738 -2.5545 -6.8583 21 6 2.1925 -2.0062 -5.3961 22 6 1.7274 -1.3232 -4.2854 23 9 0.4334 -1.4376 -3.9147 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6053 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 3.9994 -1.0728 0.4261 30 1 3.8531 0.4370 1.3574 31 1 7.2196 -0.8019 2.1917 32 1 1.4496 -1.4979 -1.4100 33 1 1.0872 0.6163 -2.5525 34 1 2.7590 1.0462 -2.1182 35 1 4.5813 0.2295 -3.3710 36 1 5.4127 -0.9928 -5.3391 37 1 1.5214 -2.6318 -5.9661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172475748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:51 Heat of formation + Delta-G solvation = -84.512058 kcal Electronic energy + Delta-G solvation = -20000.436991 eV Core-core repulsion = 16605.836505 eV Total energy + Delta-G solvation = -3394.600486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.12351 -49.10234 -39.13279 -37.08173 -33.53265 -32.32710 -30.95137 -29.93479 -28.60441 -25.33393 -24.58097 -23.31330 -21.68409 -21.27013 -19.81020 -18.31022 -17.30019 -16.23559 -16.15580 -16.04263 -15.59324 -15.48900 -15.09659 -14.57400 -14.53052 -14.30540 -14.03556 -13.26993 -12.93906 -12.83302 -12.38449 -12.31084 -11.99685 -11.82219 -11.78139 -11.41531 -11.23834 -11.10121 -10.82503 -10.43968 -10.21818 -9.63695 -9.21537 -9.17684 -8.90561 -8.75885 -8.22850 -7.92001 -5.88492 -3.89123 0.82887 0.91641 3.23894 3.37673 3.43649 3.46968 3.74512 4.29980 4.46204 4.46716 4.54628 4.70847 4.79665 5.01980 5.34608 5.40984 5.47402 5.54682 5.62687 5.66851 5.72098 5.75579 5.89103 5.96136 6.07618 6.24088 6.28579 6.40358 6.64180 6.66988 6.88773 7.29422 7.43544 7.72930 7.85140 8.08166 8.23267 8.58347 9.19697 9.73493 11.22699 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.004439 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.268849 B = 6306.735169 C = 7431.895971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.074 0.926 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.896 5.896 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.665 5.665 15 C 0.098 3.902 16 C -0.115 4.115 17 C -0.039 4.039 18 C -0.161 4.161 19 C 0.122 3.878 20 F -0.135 7.135 21 C -0.194 4.194 22 C 0.130 3.870 23 F -0.132 7.132 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.032 0.968 30 H 0.007 0.993 31 H 0.258 0.742 32 H 0.336 0.664 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.772 1.666 -15.569 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.092 0.908 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.200 1.200 14 N -0.295 5.295 15 C -0.030 4.030 16 C -0.116 4.116 17 C -0.057 4.057 18 C -0.180 4.180 19 C 0.103 3.897 20 F -0.114 7.114 21 C -0.214 4.214 22 C 0.110 3.890 23 F -0.111 7.111 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.154 0.846 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.167 0.833 36 H 0.161 0.839 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.959 1.764 -15.435 17.456 hybrid contribution -0.677 -0.668 0.453 1.054 sum -8.636 1.097 -14.982 17.327 Atomic orbital electron populations 1.22539 0.98482 1.01669 1.01311 1.21766 0.91043 0.98399 0.91319 0.90819 1.21634 1.00643 0.98420 0.92943 1.19000 0.88262 0.96463 0.97037 1.21356 0.91855 1.33915 1.08509 0.93128 1.24982 0.97125 0.95764 0.96498 1.69969 1.02127 1.44419 1.37027 0.86689 0.78267 0.79856 0.83726 1.20797 1.21361 1.20036 1.60630 1.57824 1.08730 1.02319 1.20846 0.99476 0.95108 0.87615 1.20023 0.94128 0.99641 0.97840 1.20917 0.93935 0.96799 0.94086 1.21254 1.00729 0.99008 0.97003 1.17300 0.92021 0.94633 0.85776 1.91515 1.89250 1.78569 1.52043 1.20930 0.95872 1.05004 0.99593 1.17180 0.78866 0.98227 0.94697 1.91509 1.34053 1.94545 1.90943 0.92147 0.93689 0.92740 0.93409 0.93471 0.94928 0.97467 0.93278 0.84590 0.94406 0.89296 0.83309 0.83937 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.16 37.16 0.34 -2.11 16 2 C 0.08 1.38 2.59 -67.71 -0.18 1.21 16 3 H 0.07 1.23 7.80 -51.93 -0.40 0.83 16 4 C -0.10 -2.02 4.83 -26.73 -0.13 -2.15 16 5 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 6 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 N -0.66 -10.61 5.69 -107.99 -0.61 -11.23 16 15 C 0.10 1.31 5.33 -4.98 -0.03 1.28 16 16 C -0.11 -1.45 5.40 -104.55 -0.56 -2.02 16 17 C -0.04 -0.46 9.66 -39.60 -0.38 -0.84 16 18 C -0.16 -1.76 10.03 -39.50 -0.40 -2.15 16 19 C 0.12 1.40 7.30 -39.42 -0.29 1.11 16 20 F -0.14 -1.57 17.27 2.25 0.04 -1.53 16 21 C -0.19 -2.18 10.01 -39.45 -0.39 -2.58 16 22 C 0.13 1.60 7.24 -39.43 -0.29 1.32 16 23 F -0.13 -1.67 16.66 2.25 0.04 -1.63 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 26 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.03 0.91 7.75 -51.93 -0.40 0.50 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.34 5.18 8.46 -39.29 -0.33 4.85 16 33 H 0.04 0.47 7.24 -51.93 -0.38 0.09 16 34 H 0.09 1.17 7.91 -51.93 -0.41 0.76 16 35 H 0.15 1.63 8.03 -52.49 -0.42 1.21 16 36 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -30.64 322.25 -8.05 -38.69 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.24 Total: 0.32 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -2.85 Total: -19.98 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.12 Total: -37.70 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.64 -8.05 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172475748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.825 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds