Wall clock time and date at job start Mon Mar 30 2020 01:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 C 1.50703 * 109.47376 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99813 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46904 * 90.00279 * 10 8 6 12 12 H 1.48501 * 109.47144 * 210.00274 * 10 8 6 13 13 H 1.48493 * 109.47125 * 330.00250 * 10 8 6 14 14 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 15 15 C 1.46897 * 111.00355 * 84.99974 * 14 2 1 16 16 C 1.50696 * 109.47624 * 179.97438 * 15 14 2 17 17 C 1.38224 * 119.98916 * 259.73288 * 16 15 14 18 18 C 1.38190 * 120.05172 * 179.72589 * 17 16 15 19 19 C 1.38502 * 120.02098 * 0.54359 * 18 17 16 20 20 F 1.35096 * 120.00947 * 179.75198 * 19 18 17 21 21 C 1.38400 * 119.97228 * 359.72666 * 19 18 17 22 22 C 1.38433 * 119.95367 * 359.97438 * 21 19 18 23 23 F 1.35100 * 120.01335 * 179.97438 * 22 21 19 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 28 28 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 29 29 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 30 30 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 31 31 H 0.96995 * 119.99701 * 179.97438 * 9 8 6 32 32 H 1.00901 * 110.99869 * 321.04664 * 14 2 1 33 33 H 1.09006 * 109.46948 * 300.00869 * 15 14 2 34 34 H 1.09006 * 109.47033 * 59.99701 * 15 14 2 35 35 H 1.08001 * 119.97240 * 359.96945 * 17 16 15 36 36 H 1.07999 * 119.99229 * 180.25005 * 18 17 16 37 37 H 1.08004 * 120.01753 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 6 4.0672 -1.3242 2.5440 7 1 3.3687 -1.8053 3.2127 8 6 5.4185 -1.3614 2.8152 9 7 6.2690 -0.7760 2.0007 10 14 6.0410 -2.2420 4.3405 11 1 6.3204 -3.6631 4.0121 12 1 7.2877 -1.5892 4.8148 13 1 5.0100 -2.1738 5.4069 14 7 2.0198 -0.6925 -1.1994 15 6 2.0826 0.2225 -2.3469 16 6 2.5887 -0.5215 -3.5557 17 6 3.9113 -0.3995 -3.9384 18 6 4.3781 -1.0857 -5.0433 19 6 3.5183 -1.8877 -5.7752 20 9 3.9738 -2.5545 -6.8583 21 6 2.1925 -2.0062 -5.3961 22 6 1.7274 -1.3232 -4.2854 23 9 0.4334 -1.4376 -3.9147 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6053 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 3.9994 -1.0728 0.4261 30 1 3.8531 0.4370 1.3574 31 1 7.2196 -0.8019 2.1917 32 1 1.4496 -1.4979 -1.4100 33 1 1.0872 0.6163 -2.5525 34 1 2.7590 1.0462 -2.1182 35 1 4.5813 0.2295 -3.3710 36 1 5.4127 -0.9928 -5.3391 37 1 1.5214 -2.6318 -5.9661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172475748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:51 Heat of formation + Delta-G solvation = -101.549015 kcal Electronic energy + Delta-G solvation = -20001.175769 eV Core-core repulsion = 16605.836505 eV Total energy + Delta-G solvation = -3395.339264 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.06613 -50.02050 -40.08808 -38.37725 -35.38323 -33.84637 -31.93218 -31.47894 -29.86529 -27.02291 -25.89198 -24.22424 -23.18886 -22.53575 -21.35183 -19.23587 -18.34471 -18.23259 -17.16396 -17.09575 -16.63720 -16.50318 -16.44170 -16.21383 -15.65139 -15.47776 -15.00307 -14.57014 -14.42592 -14.20060 -13.80940 -13.69566 -13.19786 -13.08239 -12.96540 -12.83467 -12.76968 -12.50949 -12.30732 -12.21403 -11.76342 -11.51219 -11.19384 -10.94794 -10.45462 -10.08339 -9.71546 -9.14823 -8.11479 -6.20951 -0.10411 0.01319 1.41518 1.42663 1.53298 2.30980 2.45606 2.83022 3.21072 3.35381 3.38672 3.58311 3.69620 3.88630 4.06476 4.10675 4.31853 4.45225 4.51725 4.61315 4.75815 4.79687 4.85097 4.95223 4.99129 5.04098 5.07305 5.10883 5.29446 5.31427 5.48804 5.62053 5.74543 5.91450 6.05908 6.21966 6.38060 6.52377 6.98547 7.46780 8.99718 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.004439 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.268849 B = 6306.735169 C = 7431.895971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.091 3.909 3 H 0.069 0.931 4 C -0.088 4.088 5 C 0.039 3.961 6 C -0.543 4.543 7 H 0.053 0.947 8 C 0.001 3.999 9 N -0.931 5.931 10 Si 0.957 3.043 11 H -0.275 1.275 12 H -0.282 1.282 13 H -0.265 1.265 14 N -0.684 5.684 15 C 0.103 3.897 16 C -0.125 4.125 17 C -0.048 4.048 18 C -0.157 4.157 19 C 0.117 3.883 20 F -0.136 7.136 21 C -0.191 4.191 22 C 0.122 3.878 23 F -0.135 7.135 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.006 0.994 30 H -0.019 1.019 31 H 0.261 0.739 32 H 0.339 0.661 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 1.182 -15.592 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 H 0.087 0.913 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.581 4.581 7 H 0.071 0.929 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.782 3.218 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.189 1.189 14 N -0.315 5.315 15 C -0.026 4.026 16 C -0.127 4.127 17 C -0.066 4.066 18 C -0.176 4.176 19 C 0.097 3.903 20 F -0.114 7.114 21 C -0.210 4.210 22 C 0.103 3.897 23 F -0.113 7.113 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.024 0.976 30 H -0.001 1.001 31 H 0.069 0.931 32 H 0.157 0.843 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.170 0.830 36 H 0.179 0.821 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.651 1.281 -15.464 17.766 hybrid contribution -0.429 -0.514 0.414 0.787 sum -9.079 0.767 -15.050 17.594 Atomic orbital electron populations 1.22395 0.95621 1.02313 1.02525 1.21550 0.93183 0.97296 0.89833 0.91314 1.21462 0.96768 0.98922 0.95505 1.18824 0.91962 0.94026 0.94997 1.21820 0.92476 1.34308 1.09540 0.92896 1.25888 0.97396 0.96478 0.99832 1.70100 1.02512 1.45561 1.38941 0.85568 0.77826 0.78629 0.79732 1.20042 1.20749 1.18949 1.60525 1.58325 1.09552 1.03121 1.20808 1.00159 0.94609 0.86978 1.20039 0.94635 1.00167 0.97819 1.21028 0.93806 0.97230 0.94580 1.21458 1.01653 0.98157 0.96328 1.17394 0.92246 0.94771 0.85849 1.91516 1.89263 1.78595 1.52066 1.21104 0.96125 1.04613 0.99188 1.17228 0.78761 0.98618 0.95137 1.91498 1.34191 1.94612 1.91039 0.91401 0.91990 0.92369 0.93092 0.93775 0.97576 1.00109 0.93050 0.84322 0.93115 0.89620 0.83023 0.82061 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 9.16 71.98 0.66 -3.59 16 2 C 0.09 2.94 2.59 44.92 0.12 3.06 16 3 H 0.07 2.29 7.80 -2.39 -0.02 2.27 16 4 C -0.09 -3.64 4.83 30.59 0.15 -3.49 16 5 C 0.04 2.08 4.86 29.85 0.15 2.23 16 6 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 7 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 10 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 N -0.68 -21.69 5.69 -495.58 -2.82 -24.51 16 15 C 0.10 2.69 5.33 85.56 0.46 3.14 16 16 C -0.13 -3.09 5.40 -19.82 -0.11 -3.20 16 17 C -0.05 -1.10 9.66 22.26 0.22 -0.89 16 18 C -0.16 -3.26 10.03 22.32 0.22 -3.04 16 19 C 0.12 2.52 7.30 22.37 0.16 2.68 16 20 F -0.14 -2.96 17.27 44.97 0.78 -2.18 16 21 C -0.19 -4.02 10.01 22.35 0.22 -3.79 16 22 C 0.12 2.88 7.24 22.37 0.16 3.04 16 23 F -0.13 -3.24 16.66 44.97 0.75 -2.49 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 1.36 7.45 -2.39 -0.02 1.34 16 26 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.01 0.34 7.75 -2.39 -0.02 0.32 16 30 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 31 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.34 10.24 8.46 -89.69 -0.76 9.48 16 33 H 0.05 1.19 7.24 -2.38 -0.02 1.17 16 34 H 0.09 2.26 7.91 -2.38 -0.02 2.24 16 35 H 0.15 3.34 8.03 -2.91 -0.02 3.31 16 36 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 37 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -65.20 322.25 4.43 -60.77 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.31 Total: 13.07 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 3.10 Total: -34.73 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.54 Total: -81.56 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 1.53 Total: -4.68 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -65.20 4.43 -60.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172475748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.776 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds