Wall clock time and date at job start Mon Mar 30 2020 01:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46950 * 2 1 4 4 C 1.52998 * 109.47053 * 240.00200 * 2 1 3 5 5 C 1.53001 * 109.46932 * 174.99850 * 4 2 1 6 6 C 1.50697 * 109.47264 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99813 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00167 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99945 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99996 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46854 * 89.99994 * 10 8 6 12 12 H 1.48495 * 109.46979 * 209.99645 * 10 8 6 13 13 H 1.48499 * 109.47200 * 329.99707 * 10 8 6 14 14 N 1.46898 * 109.47057 * 119.99842 * 2 1 3 15 15 C 1.46897 * 111.00156 * 275.00159 * 14 2 1 16 16 C 1.50699 * 109.47187 * 179.97438 * 15 14 2 17 17 C 1.38224 * 119.99193 * 260.02454 * 16 15 14 18 18 C 1.38187 * 120.05276 * 179.97438 * 17 16 15 19 19 C 1.38492 * 120.02401 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.00928 * 180.02562 * 19 18 17 21 21 C 1.38396 * 119.97598 * 359.79125 * 19 18 17 22 22 C 1.38445 * 119.94710 * 0.46293 * 21 19 18 23 23 F 1.35104 * 120.01039 * 179.78848 * 22 21 19 24 24 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47371 * 299.99784 * 1 2 3 26 26 H 1.09007 * 109.47108 * 60.00208 * 1 2 3 27 27 H 1.08995 * 109.47359 * 294.99725 * 4 2 1 28 28 H 1.09002 * 109.47214 * 55.00091 * 4 2 1 29 29 H 1.09000 * 109.47294 * 299.99738 * 5 4 2 30 30 H 1.09003 * 109.47033 * 59.99542 * 5 4 2 31 31 H 0.96997 * 119.99708 * 180.02562 * 9 8 6 32 32 H 1.00903 * 110.99900 * 151.04530 * 14 2 1 33 33 H 1.09000 * 109.46968 * 59.99840 * 15 14 2 34 34 H 1.08999 * 109.47547 * 300.00424 * 15 14 2 35 35 H 1.08000 * 119.97467 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.98617 * 180.02562 * 18 17 16 37 37 H 1.07999 * 120.03029 * 180.24657 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0672 -1.3230 -2.5445 7 1 3.3687 -1.8035 -3.2136 8 6 5.4184 -1.3599 -2.8158 9 7 6.2690 -0.7752 -2.0007 10 14 6.0411 -2.2404 -4.3411 11 1 6.0915 -1.2859 -5.4776 12 1 7.4023 -2.7750 -4.0830 13 1 5.1247 -3.3601 -4.6751 14 7 2.0197 -0.6925 1.1994 15 6 2.0824 0.2226 2.3469 16 6 2.5873 -0.5218 3.5560 17 6 1.6960 -0.9742 4.5108 18 6 2.1575 -1.6574 5.6197 19 6 3.5138 -1.8900 5.7755 20 9 3.9646 -2.5584 6.8595 21 6 4.4067 -1.4417 4.8178 22 6 3.9437 -0.7528 3.7098 23 9 4.8146 -0.3109 2.7763 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 1.7517 -1.7714 -1.2056 28 1 1.6054 -0.2616 -2.1370 29 1 3.8532 0.4371 -1.3574 30 1 3.9994 -1.0726 -0.4259 31 1 7.2196 -0.8009 -2.1918 32 1 2.9173 -1.1205 1.0287 33 1 1.0870 0.6163 2.5525 34 1 2.7587 1.0463 2.1183 35 1 0.6381 -0.7937 4.3899 36 1 1.4601 -2.0108 6.3648 37 1 5.4642 -1.6261 4.9364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172475749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:53 Heat of formation + Delta-G solvation = -85.774654 kcal Electronic energy + Delta-G solvation = -20137.130195 eV Core-core repulsion = 16742.474958 eV Total energy + Delta-G solvation = -3394.655236 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.10353 -48.86496 -39.11238 -37.07480 -33.54517 -32.35356 -30.92792 -29.84692 -28.84489 -25.47663 -24.48268 -23.26687 -21.67096 -21.25703 -19.56258 -18.21685 -17.28172 -16.49439 -16.03578 -15.98950 -15.48873 -15.39073 -15.07966 -14.69080 -14.49236 -14.41959 -14.01355 -13.25980 -12.78259 -12.54869 -12.48655 -12.35657 -11.99037 -11.89405 -11.52080 -11.45580 -11.32719 -11.03744 -10.87728 -10.47598 -10.28472 -9.76662 -9.27657 -9.15179 -9.03141 -8.71644 -8.34559 -8.04454 -5.98558 -4.01107 0.85127 0.93653 3.25027 3.32784 3.39130 3.42650 3.81625 4.36258 4.46388 4.47193 4.52057 4.71086 4.84416 5.02937 5.36767 5.41007 5.55374 5.59420 5.69707 5.74420 5.79689 5.88180 5.90162 5.94008 6.14728 6.21014 6.33047 6.48893 6.51490 6.68352 6.89223 7.07850 7.41598 7.62135 7.78510 7.84162 8.00354 8.43495 9.05575 9.63068 11.12449 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.004655 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.468724 B = 6013.342197 C = 7116.232968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.081 3.919 3 H 0.040 0.960 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.681 5.681 15 C 0.097 3.903 16 C -0.119 4.119 17 C -0.046 4.046 18 C -0.168 4.168 19 C 0.123 3.877 20 F -0.136 7.136 21 C -0.193 4.193 22 C 0.140 3.860 23 F -0.119 7.119 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.354 0.646 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.306 1.229 15.330 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.058 0.942 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.316 5.316 15 C -0.032 4.032 16 C -0.121 4.121 17 C -0.064 4.064 18 C -0.187 4.187 19 C 0.104 3.896 20 F -0.114 7.114 21 C -0.213 4.213 22 C 0.120 3.880 23 F -0.097 7.097 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.176 0.824 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.676 1.007 15.505 18.304 hybrid contribution 1.632 -0.020 -0.988 1.908 sum -8.044 0.986 14.517 16.626 Atomic orbital electron populations 1.21793 0.95605 1.01759 1.00212 1.21638 0.94556 0.96217 0.90375 0.94245 1.21835 0.99762 0.99452 0.94210 1.19128 0.88700 0.96903 0.96969 1.21221 0.91956 1.34383 1.08277 0.92685 1.25023 0.97089 0.95618 0.96653 1.69967 1.02358 1.44087 1.36883 0.86615 0.78159 0.79981 0.83380 1.20712 1.21249 1.19859 1.60728 1.34974 1.31862 1.04071 1.20830 1.00639 0.93423 0.88288 1.20042 0.91276 1.02247 0.98512 1.20753 0.99924 0.94388 0.91374 1.21154 0.93674 1.03246 1.00609 1.17290 0.92266 0.95489 0.84603 1.91514 1.89869 1.77889 1.52133 1.21041 1.01655 1.03692 0.94881 1.17304 0.87050 0.96533 0.87151 1.91639 1.68406 1.86646 1.62992 0.92319 0.93795 0.92931 0.92439 0.92606 0.96955 0.96644 0.93038 0.82373 0.89908 0.93816 0.83920 0.84205 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.41 37.16 0.35 -1.54 16 2 C 0.08 1.38 2.65 -67.71 -0.18 1.20 16 3 H 0.04 0.69 7.80 -51.93 -0.40 0.29 16 4 C -0.11 -2.35 4.74 -26.73 -0.13 -2.48 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 N -0.68 -11.30 6.30 -107.99 -0.68 -11.98 16 15 C 0.10 1.35 5.33 -4.98 -0.03 1.32 16 16 C -0.12 -1.55 5.40 -104.55 -0.56 -2.12 16 17 C -0.05 -0.47 9.66 -39.61 -0.38 -0.86 16 18 C -0.17 -1.67 10.02 -39.51 -0.40 -2.07 16 19 C 0.12 1.43 7.30 -39.43 -0.29 1.14 16 20 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 21 C -0.19 -2.45 10.01 -39.45 -0.39 -2.84 16 22 C 0.14 2.01 7.24 -39.43 -0.29 1.73 16 23 F -0.12 -2.06 16.66 2.25 0.04 -2.03 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.53 7.45 -51.93 -0.39 0.15 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.42 6.43 -51.93 -0.33 0.08 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.35 6.83 6.46 -39.29 -0.25 6.57 16 33 H 0.08 0.96 7.30 -51.93 -0.38 0.59 16 34 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 35 H 0.14 1.13 8.04 -52.49 -0.42 0.71 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -30.26 319.72 -8.00 -38.26 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.09 Total: 1.65 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -2.84 Total: -19.69 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.06 Total: -38.30 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.08 Total: -3.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.26 -8.00 -38.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172475749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.515 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds