Wall clock time and date at job start Mon Mar 30 2020 01:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46950 * 2 1 4 4 C 1.52998 * 109.47053 * 240.00200 * 2 1 3 5 5 C 1.53001 * 109.46932 * 174.99850 * 4 2 1 6 6 C 1.50697 * 109.47264 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99813 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00167 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99945 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99996 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46854 * 89.99994 * 10 8 6 12 12 H 1.48495 * 109.46979 * 209.99645 * 10 8 6 13 13 H 1.48499 * 109.47200 * 329.99707 * 10 8 6 14 14 N 1.46898 * 109.47057 * 119.99842 * 2 1 3 15 15 C 1.46897 * 111.00156 * 275.00159 * 14 2 1 16 16 C 1.50699 * 109.47187 * 179.97438 * 15 14 2 17 17 C 1.38224 * 119.99193 * 260.02454 * 16 15 14 18 18 C 1.38187 * 120.05276 * 179.97438 * 17 16 15 19 19 C 1.38492 * 120.02401 * 359.97438 * 18 17 16 20 20 F 1.35098 * 120.00928 * 180.02562 * 19 18 17 21 21 C 1.38396 * 119.97598 * 359.79125 * 19 18 17 22 22 C 1.38445 * 119.94710 * 0.46293 * 21 19 18 23 23 F 1.35104 * 120.01039 * 179.78848 * 22 21 19 24 24 H 1.09000 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47371 * 299.99784 * 1 2 3 26 26 H 1.09007 * 109.47108 * 60.00208 * 1 2 3 27 27 H 1.08995 * 109.47359 * 294.99725 * 4 2 1 28 28 H 1.09002 * 109.47214 * 55.00091 * 4 2 1 29 29 H 1.09000 * 109.47294 * 299.99738 * 5 4 2 30 30 H 1.09003 * 109.47033 * 59.99542 * 5 4 2 31 31 H 0.96997 * 119.99708 * 180.02562 * 9 8 6 32 32 H 1.00903 * 110.99900 * 151.04530 * 14 2 1 33 33 H 1.09000 * 109.46968 * 59.99840 * 15 14 2 34 34 H 1.08999 * 109.47547 * 300.00424 * 15 14 2 35 35 H 1.08000 * 119.97467 * 359.97438 * 17 16 15 36 36 H 1.08000 * 119.98617 * 180.02562 * 18 17 16 37 37 H 1.07999 * 120.03029 * 180.24657 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0672 -1.3230 -2.5445 7 1 3.3687 -1.8035 -3.2136 8 6 5.4184 -1.3599 -2.8158 9 7 6.2690 -0.7752 -2.0007 10 14 6.0411 -2.2404 -4.3411 11 1 6.0915 -1.2859 -5.4776 12 1 7.4023 -2.7750 -4.0830 13 1 5.1247 -3.3601 -4.6751 14 7 2.0197 -0.6925 1.1994 15 6 2.0824 0.2226 2.3469 16 6 2.5873 -0.5218 3.5560 17 6 1.6960 -0.9742 4.5108 18 6 2.1575 -1.6574 5.6197 19 6 3.5138 -1.8900 5.7755 20 9 3.9646 -2.5584 6.8595 21 6 4.4067 -1.4417 4.8178 22 6 3.9437 -0.7528 3.7098 23 9 4.8146 -0.3109 2.7763 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 1.7517 -1.7714 -1.2056 28 1 1.6054 -0.2616 -2.1370 29 1 3.8532 0.4371 -1.3574 30 1 3.9994 -1.0726 -0.4259 31 1 7.2196 -0.8009 -2.1918 32 1 2.9173 -1.1205 1.0287 33 1 1.0870 0.6163 2.5525 34 1 2.7587 1.0463 2.1183 35 1 0.6381 -0.7937 4.3899 36 1 1.4601 -2.0108 6.3648 37 1 5.4642 -1.6261 4.9364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172475749.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:53 Heat of formation + Delta-G solvation = -103.239546 kcal Electronic energy + Delta-G solvation = -20137.887529 eV Core-core repulsion = 16742.474958 eV Total energy + Delta-G solvation = -3395.412571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.07973 -50.02323 -40.09294 -38.43715 -35.40085 -33.88386 -31.90137 -31.44992 -30.08387 -27.15535 -25.85918 -24.20464 -23.28296 -22.47614 -21.07919 -19.21736 -18.57869 -18.26517 -17.14506 -17.10114 -16.65012 -16.55776 -16.52418 -16.29513 -15.93611 -15.48422 -14.93722 -14.57398 -14.39081 -14.30514 -13.88529 -13.42004 -13.22235 -13.11546 -13.00654 -12.84166 -12.74315 -12.47496 -12.33287 -12.20322 -11.83905 -11.59603 -11.31659 -10.96198 -10.56424 -10.08597 -9.73689 -9.34772 -8.20867 -6.32408 -0.10565 0.01233 1.37975 1.39482 1.50697 2.31600 2.39566 2.85695 3.11853 3.33756 3.40969 3.58093 3.67817 3.88743 4.06845 4.13889 4.33387 4.47338 4.51876 4.59459 4.77594 4.81210 4.86574 4.94622 5.01651 5.04349 5.07110 5.09943 5.21978 5.27796 5.47138 5.53983 5.67467 5.75995 5.83176 6.16539 6.23732 6.30148 6.84784 7.37092 8.90412 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.004655 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.468724 B = 6013.342197 C = 7116.232968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.084 3.916 3 H 0.029 0.971 4 C -0.103 4.103 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.060 0.940 8 C 0.000 4.000 9 N -0.932 5.932 10 Si 0.964 3.036 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.262 1.262 14 N -0.680 5.680 15 C 0.098 3.902 16 C -0.128 4.128 17 C -0.034 4.034 18 C -0.150 4.150 19 C 0.118 3.882 20 F -0.136 7.136 21 C -0.202 4.202 22 C 0.106 3.894 23 F -0.149 7.149 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.060 0.940 29 H -0.019 1.019 30 H -0.007 1.007 31 H 0.262 0.738 32 H 0.333 0.667 33 H 0.115 0.885 34 H 0.023 0.977 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.789 0.508 15.890 19.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.025 4.025 3 H 0.047 0.953 4 C -0.141 4.141 5 C -0.010 4.010 6 C -0.581 4.581 7 H 0.078 0.922 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.186 1.186 14 N -0.313 5.313 15 C -0.030 4.030 16 C -0.130 4.130 17 C -0.052 4.052 18 C -0.169 4.169 19 C 0.098 3.902 20 F -0.115 7.115 21 C -0.221 4.221 22 C 0.086 3.914 23 F -0.127 7.127 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.000 1.000 30 H 0.011 0.989 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.133 0.867 34 H 0.041 0.959 35 H 0.196 0.804 36 H 0.194 0.806 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.189 0.293 16.072 20.173 hybrid contribution 2.406 0.206 -1.076 2.643 sum -9.783 0.499 14.996 17.912 Atomic orbital electron populations 1.21703 0.92265 1.02401 1.01958 1.21608 0.96999 0.94911 0.88999 0.95323 1.21660 0.95868 0.99956 0.96575 1.18996 0.92435 0.94295 0.95282 1.21696 0.92574 1.34615 1.09219 0.92177 1.25983 0.97375 0.96347 1.00074 1.70115 1.02710 1.45460 1.38970 0.85467 0.77568 0.78998 0.79152 1.19694 1.20884 1.18637 1.60860 1.33443 1.32342 1.04626 1.20913 1.01899 0.92494 0.87696 1.20117 0.90971 1.02858 0.99008 1.21125 1.01037 0.92904 0.90179 1.21549 0.93191 1.01367 1.00748 1.17436 0.92973 0.95500 0.84251 1.91515 1.90036 1.77885 1.52022 1.21106 1.02264 1.03805 0.94950 1.17677 0.87629 0.98509 0.87611 1.91559 1.69506 1.87367 1.64290 0.92160 0.91350 0.91948 0.92604 0.92124 1.00032 0.98863 0.92913 0.84758 0.86688 0.95908 0.80399 0.80647 0.83437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.41 71.98 0.68 -2.46 16 2 C 0.08 2.83 2.65 44.92 0.12 2.94 16 3 H 0.03 1.02 7.80 -2.38 -0.02 1.00 16 4 C -0.10 -4.26 4.74 30.59 0.15 -4.12 16 5 C 0.03 1.46 4.80 29.85 0.14 1.60 16 6 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 7 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 8 C 0.00 0.00 5.46 84.65 0.46 0.46 16 9 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 10 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 14 N -0.68 -22.55 6.30 -495.58 -3.12 -25.67 16 15 C 0.10 2.67 5.33 85.56 0.46 3.13 16 16 C -0.13 -3.24 5.40 -19.82 -0.11 -3.35 16 17 C -0.03 -0.60 9.66 22.25 0.22 -0.38 16 18 C -0.15 -2.47 10.02 22.32 0.22 -2.25 16 19 C 0.12 2.57 7.30 22.37 0.16 2.73 16 20 F -0.14 -2.99 17.27 44.97 0.78 -2.21 16 21 C -0.20 -5.24 10.01 22.36 0.22 -5.01 16 22 C 0.11 3.17 7.24 22.37 0.16 3.34 16 23 F -0.15 -5.66 16.66 44.97 0.75 -4.91 16 24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.40 7.45 -2.39 -0.02 1.38 16 26 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 29 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 30 H -0.01 -0.40 6.43 -2.39 -0.02 -0.41 16 31 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.33 13.49 6.46 -89.69 -0.58 12.91 16 33 H 0.12 2.34 7.30 -2.39 -0.02 2.32 16 34 H 0.02 0.71 7.86 -2.39 -0.02 0.69 16 35 H 0.18 1.87 8.04 -2.91 -0.02 1.85 16 36 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -68.05 319.72 4.33 -63.72 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.49 Total: 14.58 kcal Atomic # 6 Polarization: -37.87 SS G_CDS: 3.12 Total: -34.75 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.84 Total: -83.68 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 1.53 Total: -7.13 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -68.05 4.33 -63.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172475749.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.516 kcal (2) G-P(sol) polarization free energy of solvation -68.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds