Wall clock time and date at job start Mon Mar 30 2020 01:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46609 * 2 1 4 4 C 1.52996 * 109.47135 * 240.00254 * 2 1 3 5 5 C 1.52997 * 109.46947 * 174.99568 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47288 * 59.99994 * 10 8 6 12 12 H 1.48503 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46819 * 299.99648 * 10 8 6 14 14 N 1.46898 * 109.47244 * 119.99657 * 2 1 3 15 15 C 1.46894 * 111.00329 * 275.00457 * 14 2 1 16 16 C 1.50697 * 109.47302 * 180.02562 * 15 14 2 17 17 C 1.38421 * 120.02638 * 269.72866 * 16 15 14 18 18 F 1.35109 * 120.00956 * 359.97123 * 17 16 15 19 19 C 1.38471 * 119.97748 * 179.70175 * 17 16 15 20 20 C 1.38205 * 120.02258 * 0.59056 * 19 17 16 21 21 C 1.38210 * 120.05431 * 359.68299 * 20 19 17 22 22 C 1.38417 * 120.02698 * 89.99789 * 16 15 14 23 23 F 1.35098 * 120.01057 * 359.97438 * 22 16 15 24 24 H 1.08998 * 109.47395 * 60.00534 * 1 2 3 25 25 H 1.09001 * 109.46609 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47067 * 299.99482 * 1 2 3 27 27 H 1.09001 * 109.47372 * 54.99878 * 4 2 1 28 28 H 1.09004 * 109.47108 * 294.99622 * 4 2 1 29 29 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 30 30 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 31 31 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 32 32 H 1.00900 * 110.99534 * 151.04459 * 14 2 1 33 33 H 1.08997 * 109.47269 * 300.00119 * 15 14 2 34 34 H 1.09002 * 109.47227 * 60.00167 * 15 14 2 35 35 H 1.07998 * 119.99153 * 180.31374 * 19 17 16 36 36 H 1.07998 * 119.97957 * 179.70512 * 20 19 17 37 37 H 1.07996 * 119.99544 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3689 -1.8044 -3.2130 8 6 5.4186 -1.3610 -2.8151 9 7 6.2692 -0.7764 -1.9999 10 14 6.0413 -2.2416 -4.3403 11 1 5.4498 -1.6152 -5.5497 12 1 7.5213 -2.1368 -4.4028 13 1 5.6480 -3.6724 -4.2810 14 7 2.0198 -0.6924 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5886 -0.5214 3.5557 17 6 1.6954 -1.1486 4.4071 18 9 0.3691 -1.0934 4.1550 19 6 2.1619 -1.8372 5.5142 20 6 3.5180 -1.8882 5.7759 21 6 4.4105 -1.2576 4.9296 22 6 3.9465 -0.5735 3.8186 23 9 4.8191 0.0423 2.9912 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6054 -0.2617 -2.1370 28 1 1.7518 -1.7715 -1.2056 29 1 3.9995 -1.0726 -0.4260 30 1 3.8532 0.4372 -1.3573 31 1 7.2198 -0.8022 -2.1910 32 1 2.9174 -1.1204 1.0287 33 1 2.7588 1.0463 2.1182 34 1 1.0871 0.6163 2.5525 35 1 1.4656 -2.3309 6.1758 36 1 3.8808 -2.4214 6.6421 37 1 5.4700 -1.2984 5.1348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:05 Heat of formation + Delta-G solvation = -84.192277 kcal Electronic energy + Delta-G solvation = -20400.596911 eV Core-core repulsion = 17006.010291 eV Total energy + Delta-G solvation = -3394.586619 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.94997 -48.88410 -38.97564 -37.11748 -33.63736 -32.45930 -30.33948 -30.04022 -28.91170 -25.58933 -24.60941 -22.88076 -21.72803 -21.24164 -19.54251 -18.12178 -17.34317 -16.46421 -16.04892 -15.98847 -15.55665 -15.18893 -15.10671 -14.71909 -14.50669 -14.35970 -13.84638 -12.87420 -12.77740 -12.63572 -12.48227 -12.37549 -11.98038 -11.88820 -11.63680 -11.41840 -11.26936 -10.98865 -10.84972 -10.48213 -10.27046 -9.74604 -9.26306 -9.06296 -8.93342 -8.79578 -8.33510 -8.01887 -5.97768 -4.00273 0.90014 0.91949 3.26953 3.34874 3.38959 3.41734 3.89003 4.37392 4.42807 4.47704 4.60713 4.65963 4.86896 5.06092 5.37479 5.43142 5.56311 5.57530 5.75284 5.84250 5.87376 5.89640 5.93475 6.04126 6.04639 6.19476 6.37665 6.53263 6.54721 6.70520 6.92095 7.09766 7.44243 7.63484 7.80740 7.86669 8.01330 8.44480 9.06144 9.63709 11.13262 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.019563 B = 0.004973 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.951551 B = 5629.468704 C = 6611.888289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.114 4.114 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.679 5.679 15 C 0.098 3.902 16 C -0.150 4.150 17 C 0.148 3.852 18 F -0.126 7.126 19 C -0.172 4.172 20 C -0.065 4.065 21 C -0.167 4.167 22 C 0.138 3.862 23 F -0.121 7.121 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.354 0.646 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.571 0.327 16.585 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.057 0.943 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.314 5.314 15 C -0.031 4.031 16 C -0.153 4.153 17 C 0.128 3.872 18 F -0.105 7.105 19 C -0.190 4.190 20 C -0.083 4.083 21 C -0.186 4.186 22 C 0.118 3.882 23 F -0.100 7.100 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.175 0.825 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.016 0.151 16.706 18.531 hybrid contribution 1.225 0.163 -1.236 1.748 sum -6.791 0.314 15.470 16.898 Atomic orbital electron populations 1.21788 0.95578 1.01811 1.00202 1.21632 0.94611 0.96168 0.90270 0.94274 1.21832 0.99725 0.99461 0.94190 1.19124 0.88717 0.96888 0.96926 1.21189 0.91945 1.34359 1.08332 0.92729 1.25022 0.97074 0.95612 0.96674 1.69963 1.02386 1.44037 1.36994 0.86668 0.77571 0.80272 0.83547 1.20278 1.21321 1.20229 1.60692 1.34811 1.31894 1.03995 1.20727 1.00856 0.93471 0.88059 1.19925 0.91882 1.04005 0.99458 1.17145 0.77626 0.97829 0.94634 1.91525 1.30641 1.94377 1.93921 1.21162 0.97026 1.02712 0.98149 1.20797 0.91713 0.97123 0.98707 1.21216 1.01671 1.00689 0.95054 1.17355 0.86135 0.95002 0.89691 1.91608 1.67934 1.80044 1.70367 0.92921 0.92316 0.93773 0.92582 0.92431 0.96708 0.96936 0.92992 0.82465 0.93542 0.89859 0.84244 0.84150 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.42 37.16 0.35 -1.73 16 2 C 0.08 1.49 2.65 -67.71 -0.18 1.31 16 3 H 0.04 0.73 7.80 -51.93 -0.40 0.32 16 4 C -0.11 -2.42 4.74 -26.73 -0.13 -2.54 16 5 C 0.02 0.54 4.80 -27.88 -0.13 0.40 16 6 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 10 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 N -0.68 -12.13 6.30 -108.00 -0.68 -12.81 16 15 C 0.10 1.53 5.26 -4.98 -0.03 1.51 16 16 C -0.15 -2.17 5.40 -104.49 -0.56 -2.74 16 17 C 0.15 1.92 7.24 -39.43 -0.29 1.63 16 18 F -0.13 -1.74 16.47 2.25 0.04 -1.70 16 19 C -0.17 -1.73 10.02 -39.51 -0.40 -2.13 16 20 C -0.07 -0.59 10.04 -39.60 -0.40 -0.99 16 21 C -0.17 -1.86 10.03 -39.50 -0.40 -2.26 16 22 C 0.14 1.98 7.24 -39.43 -0.29 1.69 16 23 F -0.12 -2.06 16.48 2.25 0.04 -2.02 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.01 0.40 6.43 -51.93 -0.33 0.07 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.35 7.10 6.46 -39.29 -0.25 6.84 16 33 H 0.05 0.76 7.55 -51.93 -0.39 0.37 16 34 H 0.08 1.21 6.93 -51.93 -0.36 0.85 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -30.82 318.36 -8.00 -38.82 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.05 Total: 1.95 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -2.85 Total: -19.53 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.06 Total: -39.26 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.07 Total: -3.72 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.82 -8.00 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.370 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds