Wall clock time and date at job start Mon Mar 30 2020 01:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46609 * 2 1 4 4 C 1.52996 * 109.47135 * 240.00254 * 2 1 3 5 5 C 1.52997 * 109.46947 * 174.99568 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47288 * 59.99994 * 10 8 6 12 12 H 1.48503 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46819 * 299.99648 * 10 8 6 14 14 N 1.46898 * 109.47244 * 119.99657 * 2 1 3 15 15 C 1.46894 * 111.00329 * 275.00457 * 14 2 1 16 16 C 1.50697 * 109.47302 * 180.02562 * 15 14 2 17 17 C 1.38421 * 120.02638 * 269.72866 * 16 15 14 18 18 F 1.35109 * 120.00956 * 359.97123 * 17 16 15 19 19 C 1.38471 * 119.97748 * 179.70175 * 17 16 15 20 20 C 1.38205 * 120.02258 * 0.59056 * 19 17 16 21 21 C 1.38210 * 120.05431 * 359.68299 * 20 19 17 22 22 C 1.38417 * 120.02698 * 89.99789 * 16 15 14 23 23 F 1.35098 * 120.01057 * 359.97438 * 22 16 15 24 24 H 1.08998 * 109.47395 * 60.00534 * 1 2 3 25 25 H 1.09001 * 109.46609 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47067 * 299.99482 * 1 2 3 27 27 H 1.09001 * 109.47372 * 54.99878 * 4 2 1 28 28 H 1.09004 * 109.47108 * 294.99622 * 4 2 1 29 29 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 30 30 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 31 31 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 32 32 H 1.00900 * 110.99534 * 151.04459 * 14 2 1 33 33 H 1.08997 * 109.47269 * 300.00119 * 15 14 2 34 34 H 1.09002 * 109.47227 * 60.00167 * 15 14 2 35 35 H 1.07998 * 119.99153 * 180.31374 * 19 17 16 36 36 H 1.07998 * 119.97957 * 179.70512 * 20 19 17 37 37 H 1.07996 * 119.99544 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3689 -1.8044 -3.2130 8 6 5.4186 -1.3610 -2.8151 9 7 6.2692 -0.7764 -1.9999 10 14 6.0413 -2.2416 -4.3403 11 1 5.4498 -1.6152 -5.5497 12 1 7.5213 -2.1368 -4.4028 13 1 5.6480 -3.6724 -4.2810 14 7 2.0198 -0.6924 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5886 -0.5214 3.5557 17 6 1.6954 -1.1486 4.4071 18 9 0.3691 -1.0934 4.1550 19 6 2.1619 -1.8372 5.5142 20 6 3.5180 -1.8882 5.7759 21 6 4.4105 -1.2576 4.9296 22 6 3.9465 -0.5735 3.8186 23 9 4.8191 0.0423 2.9912 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.6054 -0.2617 -2.1370 28 1 1.7518 -1.7715 -1.2056 29 1 3.9995 -1.0726 -0.4260 30 1 3.8532 0.4372 -1.3573 31 1 7.2198 -0.8022 -2.1910 32 1 2.9174 -1.1204 1.0287 33 1 2.7588 1.0463 2.1182 34 1 1.0871 0.6163 2.5525 35 1 1.4656 -2.3309 6.1758 36 1 3.8808 -2.4214 6.6421 37 1 5.4700 -1.2984 5.1348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:05 Heat of formation + Delta-G solvation = -102.266503 kcal Electronic energy + Delta-G solvation = -20401.380668 eV Core-core repulsion = 17006.010291 eV Total energy + Delta-G solvation = -3395.370377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.06370 -49.95311 -39.95918 -38.56039 -35.46928 -34.06551 -31.68338 -31.24630 -30.31683 -27.23583 -26.12734 -23.83233 -23.34042 -22.56287 -21.15810 -19.13231 -18.59709 -18.34025 -17.20580 -17.11361 -16.62817 -16.56799 -16.46615 -16.29392 -16.04986 -15.43664 -15.03147 -14.48498 -14.34469 -14.14839 -13.77791 -13.68766 -13.24008 -13.14512 -12.97486 -12.82508 -12.71459 -12.70833 -12.37166 -12.17761 -11.86796 -11.64562 -11.34920 -11.00590 -10.56559 -9.97199 -9.73356 -9.46106 -8.21078 -6.32931 -0.03575 -0.00302 1.38181 1.41579 1.49477 2.36359 2.39658 2.92545 3.11205 3.22751 3.43488 3.52994 3.67628 3.91067 4.01785 4.23395 4.25733 4.40371 4.44541 4.46595 4.73358 4.83756 4.90028 4.93889 4.97896 5.02290 5.06215 5.07325 5.17557 5.20803 5.40237 5.49595 5.63877 5.79929 5.81179 6.07179 6.21868 6.25611 6.83240 7.36434 8.90205 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.019563 B = 0.004973 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.951551 B = 5629.468704 C = 6611.888289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.085 3.915 3 H 0.029 0.971 4 C -0.101 4.101 5 C 0.028 3.972 6 C -0.545 4.545 7 H 0.060 0.940 8 C 0.001 3.999 9 N -0.932 5.932 10 Si 0.965 3.035 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.266 1.266 14 N -0.679 5.679 15 C 0.101 3.899 16 C -0.171 4.171 17 C 0.131 3.869 18 F -0.134 7.134 19 C -0.157 4.157 20 C -0.048 4.048 21 C -0.164 4.164 22 C 0.103 3.897 23 F -0.149 7.149 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.056 0.944 29 H -0.007 1.007 30 H -0.018 1.018 31 H 0.263 0.737 32 H 0.336 0.664 33 H 0.029 0.971 34 H 0.094 0.906 35 H 0.173 0.827 36 H 0.187 0.813 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.400 -1.197 17.690 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.025 4.025 3 H 0.047 0.953 4 C -0.139 4.139 5 C -0.009 4.009 6 C -0.582 4.582 7 H 0.078 0.922 8 C -0.197 4.197 9 N -0.572 5.572 10 Si 0.789 3.211 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.191 1.191 14 N -0.312 5.312 15 C -0.027 4.027 16 C -0.173 4.173 17 C 0.111 3.889 18 F -0.113 7.113 19 C -0.176 4.176 20 C -0.065 4.065 21 C -0.182 4.182 22 C 0.083 3.917 23 F -0.128 7.128 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.012 0.988 30 H 0.000 1.000 31 H 0.072 0.928 32 H 0.156 0.844 33 H 0.047 0.953 34 H 0.112 0.888 35 H 0.190 0.810 36 H 0.204 0.796 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.876 -1.366 17.817 19.953 hybrid contribution 1.497 0.632 -1.476 2.195 sum -7.380 -0.734 16.341 17.945 Atomic orbital electron populations 1.21697 0.92707 1.02285 1.01664 1.21608 0.96729 0.95001 0.89135 0.95329 1.21645 0.96127 0.99887 0.96197 1.18984 0.92140 0.94362 0.95410 1.21644 0.92637 1.34729 1.09234 0.92182 1.25988 0.97296 0.96292 1.00139 1.70112 1.02755 1.45303 1.39050 0.85501 0.77004 0.79250 0.79297 1.19138 1.20800 1.19123 1.60802 1.33511 1.32366 1.04479 1.20684 1.01035 0.92911 0.88113 1.19872 0.92476 1.05392 0.99593 1.17387 0.77108 0.98759 0.95609 1.91500 1.31070 1.94550 1.94133 1.21600 0.98160 1.00896 0.96914 1.21332 0.90812 0.95455 0.98933 1.21563 1.03239 0.99535 0.93904 1.17789 0.85976 0.96881 0.91036 1.91533 1.68732 1.80946 1.71541 0.91425 0.92263 0.92374 0.91939 0.92544 0.98844 0.99986 0.92827 0.84429 0.95303 0.88791 0.80953 0.79574 0.82240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.42 71.98 0.68 -3.03 16 2 C 0.08 3.12 2.65 44.92 0.12 3.24 16 3 H 0.03 1.11 7.80 -2.39 -0.02 1.09 16 4 C -0.10 -4.36 4.74 30.59 0.15 -4.21 16 5 C 0.03 1.54 4.80 29.85 0.14 1.69 16 6 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 7 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 8 C 0.00 0.04 5.46 84.65 0.46 0.50 16 9 N -0.93 -58.23 13.29 21.45 0.28 -57.94 16 10 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 N -0.68 -25.23 6.30 -495.60 -3.12 -28.35 16 15 C 0.10 3.33 5.26 85.56 0.45 3.78 16 16 C -0.17 -5.07 5.40 -19.78 -0.11 -5.17 16 17 C 0.13 3.26 7.24 22.37 0.16 3.43 16 18 F -0.13 -3.55 16.47 44.97 0.74 -2.80 16 19 C -0.16 -2.67 10.02 22.32 0.22 -2.45 16 20 C -0.05 -0.69 10.04 22.26 0.22 -0.46 16 21 C -0.16 -3.40 10.03 22.32 0.22 -3.18 16 22 C 0.10 3.04 7.24 22.37 0.16 3.20 16 23 F -0.15 -5.46 16.48 44.97 0.74 -4.71 16 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 1.55 7.45 -2.39 -0.02 1.53 16 27 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 29 H -0.01 -0.39 6.43 -2.39 -0.02 -0.40 16 30 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 31 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.34 14.42 6.46 -89.69 -0.58 13.84 16 33 H 0.03 1.03 7.55 -2.39 -0.02 1.01 16 34 H 0.09 2.80 6.93 -2.39 -0.02 2.78 16 35 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.19 1.05 8.06 -2.91 -0.02 1.02 16 37 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -69.25 318.36 4.28 -64.96 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.49 Total: 15.95 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.12 Total: -34.36 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.84 Total: -86.30 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 1.48 Total: -7.52 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -69.25 4.28 -64.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.302 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds