Wall clock time and date at job start Mon Mar 30 2020 01:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.53002 * 109.47392 * 240.00135 * 2 1 3 5 5 C 1.53000 * 109.47379 * 174.99973 * 4 2 1 6 6 C 1.50695 * 109.47339 * 180.02562 * 5 4 2 7 7 H 1.08006 * 119.99588 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00492 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99769 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00469 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46990 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47327 * 120.00073 * 10 8 6 13 13 H 1.48496 * 109.47273 * 240.00077 * 10 8 6 14 14 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 15 15 C 1.46894 * 111.00072 * 275.00214 * 14 2 1 16 16 C 1.50703 * 109.47113 * 179.97438 * 15 14 2 17 17 C 1.38257 * 119.99685 * 259.72694 * 16 15 14 18 18 C 1.38215 * 120.06549 * 179.72532 * 17 16 15 19 19 C 1.38257 * 120.07276 * 0.54754 * 18 17 16 20 20 C 1.38371 * 119.99961 * 359.72774 * 19 18 17 21 21 F 1.35097 * 120.03865 * 179.97438 * 20 19 18 22 22 C 1.38368 * 120.00041 * 79.99979 * 16 15 14 23 23 F 1.35099 * 120.03470 * 359.97438 * 22 16 15 24 24 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 25 25 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 26 26 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46957 * 294.99695 * 4 2 1 28 28 H 1.09000 * 109.47241 * 54.99615 * 4 2 1 29 29 H 1.09006 * 109.46717 * 300.00085 * 5 4 2 30 30 H 1.09000 * 109.47227 * 59.99633 * 5 4 2 31 31 H 0.97006 * 120.00368 * 179.97438 * 9 8 6 32 32 H 1.00901 * 110.99477 * 38.95757 * 14 2 1 33 33 H 1.08998 * 109.47278 * 299.99867 * 15 14 2 34 34 H 1.09000 * 109.47351 * 59.99975 * 15 14 2 35 35 H 1.07994 * 119.96536 * 359.97438 * 17 16 15 36 36 H 1.08001 * 119.96216 * 180.27669 * 18 17 16 37 37 H 1.07995 * 120.00094 * 179.74851 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0671 -1.3231 -2.5444 7 1 3.3686 -1.8035 -3.2136 8 6 5.4183 -1.3591 -2.8164 9 7 6.2689 -0.7745 -2.0013 10 14 6.0410 -2.2396 -4.3416 11 1 4.8911 -2.8112 -5.0874 12 1 6.7633 -1.2753 -5.2097 13 1 6.9637 -3.3319 -3.9407 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2226 2.3469 16 6 2.5874 -0.5219 3.5560 17 6 1.6966 -0.9691 4.5142 18 6 2.1576 -1.6569 5.6208 19 6 3.5115 -1.8893 5.7777 20 6 4.4060 -1.4380 4.8234 21 9 5.7292 -1.6641 4.9762 22 6 3.9429 -0.7528 3.7101 23 9 4.8144 -0.3116 2.7767 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7715 -1.2056 28 1 1.6054 -0.2618 -2.1370 29 1 3.8531 0.4371 -1.3573 30 1 3.9995 -1.0727 -0.4260 31 1 7.2196 -0.8001 -2.1924 32 1 1.4496 -1.4979 1.4100 33 1 2.7588 1.0462 2.1182 34 1 1.0871 0.6162 2.5526 35 1 0.6392 -0.7844 4.3957 36 1 1.4599 -2.0095 6.3660 37 1 3.8708 -2.4233 6.6449 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172482689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:12 Heat of formation + Delta-G solvation = -102.093520 kcal Electronic energy + Delta-G solvation = -20292.342392 eV Core-core repulsion = 16896.979516 eV Total energy + Delta-G solvation = -3395.362876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.43921 -49.52942 -40.12119 -38.39085 -35.43455 -33.93733 -31.74182 -31.23515 -30.03999 -27.05999 -26.18269 -23.75056 -23.24690 -22.61840 -21.40145 -18.84909 -18.39007 -18.23299 -17.88125 -17.35662 -16.58052 -16.47249 -16.02798 -15.92270 -15.70553 -15.29415 -15.11384 -14.51558 -14.31368 -14.02475 -13.91709 -13.72410 -13.24768 -13.06648 -13.02907 -12.87873 -12.74868 -12.56810 -12.30467 -12.08670 -11.73698 -11.54102 -11.22550 -10.96625 -10.51485 -9.93327 -9.69192 -9.13043 -8.14594 -6.26479 -0.01813 0.01133 1.37128 1.38707 1.51792 2.40214 2.42105 2.87917 3.17305 3.33372 3.44017 3.62648 3.81273 4.04273 4.07964 4.21203 4.32667 4.38287 4.49519 4.58758 4.80123 4.89245 4.93276 4.99460 5.04334 5.06565 5.12147 5.22191 5.29581 5.32499 5.47035 5.57727 5.82117 5.86935 6.02135 6.22347 6.32600 6.64008 6.95116 7.42263 8.96881 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.017326 B = 0.005180 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.637306 B = 5404.302075 C = 6688.729976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 H 0.057 0.943 4 C -0.088 4.088 5 C 0.038 3.962 6 C -0.541 4.541 7 H 0.058 0.942 8 C -0.005 4.005 9 N -0.936 5.936 10 Si 0.964 3.036 11 H -0.259 1.259 12 H -0.278 1.278 13 H -0.280 1.280 14 N -0.692 5.692 15 C 0.105 3.895 16 C -0.100 4.100 17 C -0.082 4.082 18 C -0.087 4.087 19 C -0.119 4.119 20 C 0.031 3.969 21 F -0.150 7.150 22 C 0.049 3.951 23 F -0.150 7.150 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.052 0.948 29 H -0.028 1.028 30 H -0.002 1.002 31 H 0.260 0.740 32 H 0.347 0.653 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.992 -0.667 18.025 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.018 4.018 3 H 0.075 0.925 4 C -0.126 4.126 5 C 0.001 3.999 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.202 4.202 9 N -0.577 5.577 10 Si 0.788 3.212 11 H -0.182 1.182 12 H -0.203 1.203 13 H -0.206 1.206 14 N -0.324 5.324 15 C -0.023 4.023 16 C -0.101 4.101 17 C -0.101 4.101 18 C -0.104 4.104 19 C -0.138 4.138 20 C 0.011 3.989 21 F -0.128 7.128 22 C 0.028 3.972 23 F -0.129 7.129 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.071 0.929 29 H -0.010 1.010 30 H 0.016 0.984 31 H 0.068 0.932 32 H 0.167 0.833 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.192 0.808 36 H 0.204 0.796 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -14.075 -0.531 17.834 22.725 hybrid contribution 0.991 -0.016 -0.992 1.402 sum -13.083 -0.548 16.842 21.334 Atomic orbital electron populations 1.22367 0.94487 1.02764 1.02842 1.21522 0.93899 0.96694 0.89690 0.92470 1.21461 0.96108 0.99225 0.95807 1.18822 0.92642 0.93559 0.94904 1.21860 0.92537 1.34264 1.09290 0.92342 1.26034 0.97465 0.96561 1.00159 1.70174 1.02508 1.45855 1.39120 0.85420 0.78478 0.78223 0.79041 1.18226 1.20339 1.20630 1.60328 1.59101 1.09899 1.03115 1.20764 1.00521 0.93969 0.87093 1.20017 0.90105 1.01352 0.98642 1.21480 1.00840 0.95700 0.92050 1.21563 0.94222 0.96398 0.98243 1.21486 0.93467 1.00413 0.98446 1.18240 0.78745 1.04418 0.97518 1.91468 1.32531 1.93179 1.95670 1.18249 0.89068 1.01970 0.87881 1.91541 1.69343 1.87494 1.64522 0.91074 0.91746 0.91664 0.93296 0.92948 1.00976 0.98404 0.93165 0.83350 0.92773 0.90172 0.80763 0.79647 0.81180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 9.16 71.98 0.66 -3.11 16 2 C 0.09 3.03 2.59 44.91 0.12 3.14 16 3 H 0.06 2.05 7.80 -2.38 -0.02 2.04 16 4 C -0.09 -3.76 4.83 30.60 0.15 -3.61 16 5 C 0.04 2.17 4.86 29.85 0.15 2.31 16 6 C -0.54 -33.05 9.11 25.60 0.23 -32.82 16 7 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 8 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 9 N -0.94 -61.92 13.29 21.44 0.28 -61.64 16 10 Si 0.96 47.16 29.54 68.60 2.03 49.18 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 14 N -0.69 -22.49 5.69 -495.58 -2.82 -25.31 16 15 C 0.10 2.84 5.33 85.56 0.46 3.30 16 16 C -0.10 -2.55 5.40 -19.83 -0.11 -2.65 16 17 C -0.08 -1.24 9.67 22.27 0.22 -1.03 16 18 C -0.09 -1.05 10.04 22.27 0.22 -0.83 16 19 C -0.12 -2.14 10.02 22.31 0.22 -1.92 16 20 C 0.03 0.89 7.31 22.41 0.16 1.06 16 21 F -0.15 -5.03 17.18 44.97 0.77 -4.26 16 22 C 0.05 1.64 7.25 22.41 0.16 1.81 16 23 F -0.15 -6.74 16.58 44.97 0.75 -6.00 16 24 H 0.07 1.27 7.45 -2.39 -0.02 1.25 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.37 8.13 -2.38 -0.02 1.35 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 29 H -0.03 -1.78 8.14 -2.38 -0.02 -1.79 16 30 H 0.00 -0.16 7.75 -2.39 -0.02 -0.18 16 31 H 0.26 16.13 8.31 -92.70 -0.77 15.36 16 32 H 0.35 9.61 8.46 -89.69 -0.76 8.85 16 33 H 0.05 1.78 7.86 -2.39 -0.02 1.77 16 34 H 0.08 1.52 7.29 -2.39 -0.02 1.50 16 35 H 0.17 1.30 8.03 -2.91 -0.02 1.28 16 36 H 0.19 0.58 8.06 -2.91 -0.02 0.55 16 37 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -80.12 322.15 4.42 -75.70 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.31 Total: 6.54 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 3.10 Total: -34.22 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -2.54 Total: -86.95 kcal Atomic # 9 Polarization: -11.78 SS G_CDS: 1.52 Total: -10.26 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -80.12 4.42 -75.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.392 kcal (2) G-P(sol) polarization free energy of solvation -80.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds