Wall clock time and date at job start Mon Mar 30 2020 01:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.57284 * 2 1 4 4 C 1.53097 * 109.52247 * 120.14993 * 2 1 3 5 5 O 1.42896 * 109.41325 * 177.51948 * 4 2 1 6 6 C 1.42904 * 114.10013 * 298.84295 * 5 4 2 7 7 C 1.53087 * 109.41331 * 61.15798 * 6 5 4 8 8 C 1.53170 * 109.52793 * 239.84144 * 2 1 3 9 9 H 1.09000 * 109.54827 * 63.15210 * 8 2 1 10 10 C 1.50705 * 109.54224 * 302.98045 * 8 2 1 11 11 O 1.21285 * 119.99893 * 359.97438 * 10 8 2 12 12 N 1.34776 * 120.00111 * 180.02562 * 10 8 2 13 13 C 1.47578 * 134.49243 * 179.97438 * 12 10 8 14 14 C 1.53949 * 86.11832 * 155.36196 * 13 12 10 15 15 O 1.42895 * 113.74125 * 269.15961 * 14 13 12 16 16 C 1.50697 * 113.74205 * 137.95145 * 14 13 12 17 17 H 1.08002 * 120.00296 * 5.00353 * 16 14 13 18 18 C 1.37878 * 119.99572 * 185.27153 * 16 14 13 19 19 N 1.31510 * 120.00541 * 6.63206 * 18 16 14 20 20 Si 1.86805 * 119.99630 * 186.63060 * 18 16 14 21 21 H 1.48506 * 109.46989 * 84.83534 * 20 18 16 22 22 H 1.48497 * 109.47011 * 204.83596 * 20 18 16 23 23 H 1.48498 * 109.46966 * 324.83620 * 20 18 16 24 24 C 1.47581 * 134.49186 * 0.02562 * 12 10 8 25 25 H 1.09005 * 109.46785 * 180.15515 * 1 2 3 26 26 H 1.08994 * 109.47785 * 300.15965 * 1 2 3 27 27 H 1.08998 * 109.47159 * 60.16361 * 1 2 3 28 28 H 1.08999 * 109.48124 * 297.50442 * 4 2 1 29 29 H 1.08999 * 109.47676 * 57.53720 * 4 2 1 30 30 H 1.08998 * 109.48183 * 181.14811 * 6 5 4 31 31 H 1.09003 * 109.48058 * 301.16911 * 6 5 4 32 32 H 1.09003 * 109.51969 * 182.48881 * 7 6 5 33 33 H 1.08999 * 109.52358 * 62.30359 * 7 6 5 34 34 H 1.09000 * 113.76849 * 41.06025 * 13 12 10 35 35 H 1.09001 * 113.77638 * 269.66357 * 13 12 10 36 36 H 0.96695 * 114.00123 * 162.46887 * 15 14 13 37 37 H 0.96993 * 120.00414 * 179.97438 * 19 18 16 38 38 H 1.08994 * 113.77271 * 90.33761 * 24 12 10 39 39 H 1.09007 * 113.76666 * 318.93403 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7247 1.2477 5 8 3.4694 -0.7740 1.2165 6 6 4.0044 -1.4814 0.0959 7 6 3.5717 -0.7870 -1.1980 8 6 2.0420 -0.7253 -1.2482 9 1 1.7267 -0.1834 -2.1399 10 6 1.4819 -2.1239 -1.2839 11 8 0.7457 -2.5051 -0.3986 12 7 1.7998 -2.9514 -2.2991 13 6 1.4489 -4.3416 -2.6488 14 6 1.7552 -3.9422 -4.1037 15 8 0.6178 -3.4544 -4.8180 16 6 2.5269 -4.9856 -4.8697 17 1 2.7408 -5.9414 -4.4147 18 6 2.9647 -4.7179 -6.1494 19 7 2.8246 -3.5113 -6.6535 20 14 3.7571 -6.0691 -7.1672 21 1 2.7003 -6.8633 -7.8439 22 1 4.6495 -5.4619 -8.1871 23 1 4.5511 -6.9562 -6.2798 24 6 2.6393 -2.8317 -3.5069 25 1 -0.3633 -1.0277 0.0028 26 1 -0.3634 0.5163 0.8885 27 1 -0.3633 0.5113 -0.8914 28 1 1.7158 -0.1883 2.1389 29 1 1.6432 -1.7391 1.2678 30 1 5.0926 -1.4901 0.1575 31 1 3.6318 -2.5057 0.1011 32 1 3.9418 -1.3501 -2.0548 33 1 3.9780 0.2241 -1.2223 34 1 0.4020 -4.5882 -2.4720 35 1 2.1364 -5.0837 -2.2429 36 1 0.8387 -2.9603 -5.6193 37 1 3.1330 -3.3229 -7.5536 38 1 3.6760 -3.1307 -3.3528 39 1 2.5431 -1.8723 -4.0155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256345932.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:12 Heat of formation + Delta-G solvation = -100.821690 kcal Electronic energy + Delta-G solvation = -22123.536400 eV Core-core repulsion = 18839.316191 eV Total energy + Delta-G solvation = -3284.220209 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55623 -38.73085 -37.08421 -34.07920 -33.98223 -32.34632 -32.12835 -28.71445 -26.79012 -25.72029 -25.37136 -24.65741 -22.27699 -21.18045 -19.61446 -18.09521 -17.22743 -16.51220 -16.02621 -15.90660 -15.49999 -15.02520 -14.89785 -14.46792 -14.06100 -13.90489 -13.53757 -13.10577 -12.62370 -12.46495 -12.33836 -12.09573 -11.87246 -11.83064 -11.56526 -11.31271 -11.11358 -11.05326 -10.85329 -10.51282 -10.47616 -10.40879 -10.26982 -9.49718 -9.38296 -8.99314 -8.79093 -8.43227 -7.84158 -6.40592 -4.48494 3.10858 3.14907 3.22475 3.24465 3.49593 4.01809 4.18656 4.69917 4.76794 4.85586 4.87656 5.03493 5.21496 5.35950 5.50448 5.57123 5.65500 5.75510 5.82810 5.83426 5.90297 5.92766 6.04327 6.12665 6.16036 6.20667 6.26691 6.31863 6.45586 6.56735 6.62068 6.69560 6.97627 7.32811 7.60381 7.85836 8.43786 8.53544 8.71048 9.17979 9.24551 10.67267 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.005269 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.706611 B = 5312.586536 C = 5597.287290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.054 3.946 5 O -0.388 6.388 6 C 0.061 3.939 7 C -0.149 4.149 8 C -0.102 4.102 9 H 0.096 0.904 10 C 0.533 3.467 11 O -0.558 6.558 12 N -0.631 5.631 13 C 0.112 3.888 14 C 0.238 3.762 15 O -0.567 6.567 16 C -0.538 4.538 17 H 0.070 0.930 18 C 0.076 3.924 19 N -0.894 5.894 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.082 3.918 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.384 0.616 37 H 0.271 0.729 38 H 0.083 0.917 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 6.134 7.709 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.119 4.119 3 H 0.094 0.906 4 C -0.022 4.022 5 O -0.306 6.306 6 C -0.016 4.016 7 C -0.186 4.186 8 C -0.123 4.123 9 H 0.114 0.886 10 C 0.323 3.677 11 O -0.439 6.439 12 N -0.364 5.364 13 C -0.010 4.010 14 C 0.197 3.803 15 O -0.376 6.376 16 C -0.576 4.576 17 H 0.088 0.912 18 C -0.127 4.127 19 N -0.532 5.532 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.041 4.041 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.234 0.766 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.110 5.970 8.781 10.677 hybrid contribution 0.691 -0.301 -1.483 1.664 sum 1.801 5.669 7.298 9.415 Atomic orbital electron populations 1.22094 0.94030 1.05133 1.00726 1.21493 0.97102 0.98942 0.94373 0.90562 1.22907 0.80293 1.02054 0.96970 1.87850 1.21019 1.76364 1.45416 1.22536 0.98829 0.94845 0.85377 1.22213 0.94068 1.02757 0.99601 1.21338 0.96305 0.94315 1.00385 0.88625 1.20096 0.80917 0.86672 0.79971 1.90484 1.38820 1.77256 1.37338 1.50273 1.48133 1.14799 1.23176 1.23414 1.00537 0.82676 0.94352 1.19888 0.83300 0.89887 0.87207 1.86123 1.33079 1.75800 1.42550 1.21412 1.35050 1.01192 0.99991 0.91231 1.25020 0.94534 0.95671 0.97505 1.69663 1.47054 1.19391 1.17101 0.86428 0.79096 0.81670 0.79776 1.20192 1.21079 1.19677 1.24278 0.96209 1.01900 0.81696 0.88787 0.93206 0.93254 0.89553 0.90369 0.88834 0.93244 0.89750 0.90278 0.91189 0.89646 0.76564 0.91961 0.89931 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.86 37.16 0.33 -1.97 16 2 C -0.10 -1.42 2.67 -90.48 -0.24 -1.66 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.05 0.80 5.86 37.21 0.22 1.02 16 5 O -0.39 -5.95 10.76 -35.23 -0.38 -6.32 16 6 C 0.06 0.87 6.62 37.20 0.25 1.12 16 7 C -0.15 -2.06 5.55 -26.60 -0.15 -2.21 16 8 C -0.10 -1.58 2.44 -91.59 -0.22 -1.81 16 9 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 10 C 0.53 10.09 5.76 -10.98 -0.06 10.02 16 11 O -0.56 -11.57 12.09 5.55 0.07 -11.50 16 12 N -0.63 -12.55 3.57 -178.28 -0.64 -13.18 16 13 C 0.11 2.35 8.22 -2.97 -0.02 2.33 16 14 C 0.24 5.47 1.26 -90.82 -0.11 5.35 16 15 O -0.57 -13.86 13.40 -35.23 -0.47 -14.33 16 16 C -0.54 -13.17 8.59 -34.44 -0.30 -13.47 16 17 H 0.07 1.68 7.82 -52.49 -0.41 1.27 16 18 C 0.08 1.86 5.38 -17.82 -0.10 1.76 16 19 N -0.89 -21.99 11.76 55.43 0.65 -21.34 16 20 Si 0.90 19.21 29.54 -169.99 -5.02 14.19 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 C 0.08 1.65 6.27 -2.95 -0.02 1.63 16 25 H 0.09 1.60 5.27 -51.93 -0.27 1.32 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.33 5.80 -51.93 -0.30 1.03 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.79 7.38 -51.93 -0.38 0.40 16 32 H 0.08 1.20 6.10 -51.93 -0.32 0.88 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 36 H 0.38 9.26 7.45 45.56 0.34 9.60 16 37 H 0.27 6.39 8.31 -40.82 -0.34 6.06 16 38 H 0.08 1.62 7.89 -51.93 -0.41 1.21 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -26.58 307.30 -6.71 -33.29 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.12 Total: 12.46 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.43 Total: 2.12 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.02 Total: -34.52 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.78 Total: -32.15 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.58 -6.71 -33.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256345932.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.536 kcal (2) G-P(sol) polarization free energy of solvation -26.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds