Wall clock time and date at job start Mon Mar 30 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.57284 * 2 1 4 4 C 1.53097 * 109.52247 * 120.14993 * 2 1 3 5 5 O 1.42896 * 109.41325 * 177.51948 * 4 2 1 6 6 C 1.42904 * 114.10013 * 298.84295 * 5 4 2 7 7 C 1.53087 * 109.41331 * 61.15798 * 6 5 4 8 8 C 1.53170 * 109.52793 * 239.84144 * 2 1 3 9 9 H 1.09000 * 109.54827 * 63.15210 * 8 2 1 10 10 C 1.50705 * 109.54224 * 302.98045 * 8 2 1 11 11 O 1.21285 * 119.99893 * 359.97438 * 10 8 2 12 12 N 1.34776 * 120.00111 * 180.02562 * 10 8 2 13 13 C 1.47578 * 134.49243 * 179.97438 * 12 10 8 14 14 C 1.53949 * 86.11832 * 155.36196 * 13 12 10 15 15 O 1.42895 * 113.74125 * 269.15961 * 14 13 12 16 16 C 1.50697 * 113.74205 * 137.95145 * 14 13 12 17 17 H 1.08002 * 120.00296 * 5.00353 * 16 14 13 18 18 C 1.37878 * 119.99572 * 185.27153 * 16 14 13 19 19 N 1.31510 * 120.00541 * 6.63206 * 18 16 14 20 20 Si 1.86805 * 119.99630 * 186.63060 * 18 16 14 21 21 H 1.48506 * 109.46989 * 84.83534 * 20 18 16 22 22 H 1.48497 * 109.47011 * 204.83596 * 20 18 16 23 23 H 1.48498 * 109.46966 * 324.83620 * 20 18 16 24 24 C 1.47581 * 134.49186 * 0.02562 * 12 10 8 25 25 H 1.09005 * 109.46785 * 180.15515 * 1 2 3 26 26 H 1.08994 * 109.47785 * 300.15965 * 1 2 3 27 27 H 1.08998 * 109.47159 * 60.16361 * 1 2 3 28 28 H 1.08999 * 109.48124 * 297.50442 * 4 2 1 29 29 H 1.08999 * 109.47676 * 57.53720 * 4 2 1 30 30 H 1.08998 * 109.48183 * 181.14811 * 6 5 4 31 31 H 1.09003 * 109.48058 * 301.16911 * 6 5 4 32 32 H 1.09003 * 109.51969 * 182.48881 * 7 6 5 33 33 H 1.08999 * 109.52358 * 62.30359 * 7 6 5 34 34 H 1.09000 * 113.76849 * 41.06025 * 13 12 10 35 35 H 1.09001 * 113.77638 * 269.66357 * 13 12 10 36 36 H 0.96695 * 114.00123 * 162.46887 * 15 14 13 37 37 H 0.96993 * 120.00414 * 179.97438 * 19 18 16 38 38 H 1.08994 * 113.77271 * 90.33761 * 24 12 10 39 39 H 1.09007 * 113.76666 * 318.93403 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7247 1.2477 5 8 3.4694 -0.7740 1.2165 6 6 4.0044 -1.4814 0.0959 7 6 3.5717 -0.7870 -1.1980 8 6 2.0420 -0.7253 -1.2482 9 1 1.7267 -0.1834 -2.1399 10 6 1.4819 -2.1239 -1.2839 11 8 0.7457 -2.5051 -0.3986 12 7 1.7998 -2.9514 -2.2991 13 6 1.4489 -4.3416 -2.6488 14 6 1.7552 -3.9422 -4.1037 15 8 0.6178 -3.4544 -4.8180 16 6 2.5269 -4.9856 -4.8697 17 1 2.7408 -5.9414 -4.4147 18 6 2.9647 -4.7179 -6.1494 19 7 2.8246 -3.5113 -6.6535 20 14 3.7571 -6.0691 -7.1672 21 1 2.7003 -6.8633 -7.8439 22 1 4.6495 -5.4619 -8.1871 23 1 4.5511 -6.9562 -6.2798 24 6 2.6393 -2.8317 -3.5069 25 1 -0.3633 -1.0277 0.0028 26 1 -0.3634 0.5163 0.8885 27 1 -0.3633 0.5113 -0.8914 28 1 1.7158 -0.1883 2.1389 29 1 1.6432 -1.7391 1.2678 30 1 5.0926 -1.4901 0.1575 31 1 3.6318 -2.5057 0.1011 32 1 3.9418 -1.3501 -2.0548 33 1 3.9780 0.2241 -1.2223 34 1 0.4020 -4.5882 -2.4720 35 1 2.1364 -5.0837 -2.2429 36 1 0.8387 -2.9603 -5.6193 37 1 3.1330 -3.3229 -7.5536 38 1 3.6760 -3.1307 -3.3528 39 1 2.5431 -1.8723 -4.0155 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256345932.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:11 Heat of formation + Delta-G solvation = -119.332776 kcal Electronic energy + Delta-G solvation = -22124.339101 eV Core-core repulsion = 18839.316191 eV Total energy + Delta-G solvation = -3285.022910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.94025 -40.24775 -38.55397 -35.81825 -35.24610 -34.22536 -33.31787 -30.32724 -28.08289 -27.20386 -27.03693 -26.05847 -23.43219 -22.57522 -21.20600 -19.70136 -18.97826 -17.91140 -17.30790 -17.22105 -17.08786 -16.57245 -16.35054 -16.03239 -15.41355 -15.30126 -15.05781 -14.49662 -14.27531 -13.91848 -13.70242 -13.41196 -13.35943 -13.22576 -12.94310 -12.80259 -12.74423 -12.53580 -12.29397 -12.19485 -12.03433 -11.59554 -11.49023 -11.19073 -10.80465 -10.63948 -10.39767 -10.07026 -9.49297 -8.24780 -6.38456 1.46140 1.50472 1.57073 1.63088 1.96031 2.42106 2.90360 2.98259 3.38707 3.56778 3.71577 3.74993 3.92200 4.02153 4.15122 4.24785 4.39218 4.51653 4.54534 4.57425 4.66586 4.70728 4.73782 4.79616 4.83592 4.87346 4.94489 4.97519 5.04781 5.09713 5.18233 5.20860 5.51244 5.72855 6.02075 6.18385 6.64954 6.88245 7.18646 7.30505 7.36087 8.81845 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032298 B = 0.005269 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.706611 B = 5312.586536 C = 5597.287290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.096 4.096 3 H 0.102 0.898 4 C 0.054 3.946 5 O -0.393 6.393 6 C 0.059 3.941 7 C -0.143 4.143 8 C -0.101 4.101 9 H 0.102 0.898 10 C 0.528 3.472 11 O -0.578 6.578 12 N -0.633 5.633 13 C 0.112 3.888 14 C 0.219 3.781 15 O -0.579 6.579 16 C -0.558 4.558 17 H 0.066 0.934 18 C 0.040 3.960 19 N -0.908 5.908 20 Si 0.959 3.041 21 H -0.281 1.281 22 H -0.281 1.281 23 H -0.268 1.268 24 C 0.102 3.898 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.118 0.882 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.381 0.619 37 H 0.273 0.727 38 H 0.089 0.911 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.847 7.328 7.959 11.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.115 4.115 3 H 0.120 0.880 4 C -0.022 4.022 5 O -0.312 6.312 6 C -0.017 4.017 7 C -0.181 4.181 8 C -0.122 4.122 9 H 0.120 0.880 10 C 0.319 3.681 11 O -0.460 6.460 12 N -0.366 5.366 13 C -0.011 4.011 14 C 0.179 3.821 15 O -0.388 6.388 16 C -0.596 4.596 17 H 0.084 0.916 18 C -0.162 4.162 19 N -0.547 5.547 20 Si 0.785 3.215 21 H -0.207 1.207 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.021 4.021 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.068 0.932 30 H 0.136 0.864 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.249 7.171 9.046 11.761 hybrid contribution 0.278 -0.693 -1.522 1.695 sum 2.528 6.478 7.524 10.245 Atomic orbital electron populations 1.22015 0.94167 1.03354 1.02080 1.21534 0.96962 0.99831 0.93212 0.88020 1.22907 0.80115 1.00858 0.98322 1.87847 1.21154 1.76279 1.45897 1.22626 1.00153 0.93528 0.85426 1.22210 0.92655 1.04086 0.99101 1.21435 0.97476 0.91801 1.01497 0.87964 1.20818 0.80341 0.87787 0.79121 1.90497 1.39611 1.77957 1.37962 1.50274 1.48331 1.14406 1.23638 1.23366 1.00148 0.83958 0.93617 1.20122 0.83475 0.90920 0.87633 1.86111 1.34180 1.75895 1.42633 1.21630 1.35614 1.01577 1.00781 0.91561 1.25616 0.95012 0.97356 0.98225 1.69719 1.47308 1.20315 1.17309 0.85559 0.78141 0.79424 0.78400 1.20702 1.20658 1.19288 1.23987 0.95951 1.00828 0.81317 0.91994 0.91042 0.92746 0.87411 0.93235 0.86395 0.95638 0.90164 0.87768 0.92431 0.88433 0.76819 0.91800 0.89286 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 8.86 71.98 0.64 -3.60 16 2 C -0.10 -2.51 2.67 -10.70 -0.03 -2.54 16 3 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.05 1.51 5.86 72.01 0.42 1.93 16 5 O -0.39 -11.20 10.76 -148.98 -1.60 -12.81 16 6 C 0.06 1.58 6.62 72.01 0.48 2.06 16 7 C -0.14 -3.62 5.55 30.68 0.17 -3.45 16 8 C -0.10 -2.96 2.44 -11.42 -0.03 -2.98 16 9 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 10 C 0.53 19.80 5.76 87.66 0.50 20.30 16 11 O -0.58 -24.28 12.09 -3.04 -0.04 -24.31 16 12 N -0.63 -25.13 3.57 -840.15 -3.00 -28.13 16 13 C 0.11 4.74 8.22 86.48 0.71 5.45 16 14 C 0.22 10.10 1.26 -10.87 -0.01 10.08 16 15 O -0.58 -28.67 13.40 -148.98 -2.00 -30.66 16 16 C -0.56 -27.26 8.59 25.60 0.22 -27.04 16 17 H 0.07 3.19 7.82 -2.91 -0.02 3.17 16 18 C 0.04 1.92 5.38 84.66 0.46 2.38 16 19 N -0.91 -44.20 11.76 21.45 0.25 -43.95 16 20 Si 0.96 38.88 29.54 68.60 2.03 40.90 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 24 C 0.10 4.06 6.27 86.49 0.54 4.60 16 25 H 0.06 2.09 5.27 -2.38 -0.01 2.07 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.05 1.68 5.80 -2.39 -0.01 1.66 16 30 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.03 0.80 7.38 -2.39 -0.02 0.78 16 32 H 0.08 2.12 6.10 -2.39 -0.01 2.10 16 33 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.10 3.83 8.09 -2.39 -0.02 3.81 16 36 H 0.38 18.65 7.45 -74.06 -0.55 18.10 16 37 H 0.27 12.68 8.31 -92.71 -0.77 11.91 16 38 H 0.09 3.42 7.89 -2.39 -0.02 3.40 16 39 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 Total: -1.00 -55.87 307.30 0.22 -55.65 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.50 Total: 36.10 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 4.07 Total: 7.20 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -2.75 Total: -72.08 kcal Atomic # 8 Polarization: -64.15 SS G_CDS: -3.64 Total: -67.78 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.90 kcal Total: -55.87 0.22 -55.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256345932.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.679 kcal (2) G-P(sol) polarization free energy of solvation -55.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds