Wall clock time and date at job start Mon Mar 30 2020 01:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.57245 * 2 1 4 4 C 1.53090 * 109.51985 * 239.84877 * 2 1 3 5 5 O 1.42925 * 109.41879 * 297.69688 * 4 2 1 6 6 C 1.42900 * 114.08813 * 298.85197 * 5 4 2 7 7 C 1.53097 * 109.42163 * 61.14994 * 6 5 4 8 8 C 1.53176 * 109.16363 * 302.38360 * 7 6 5 9 9 H 1.08992 * 109.55015 * 297.11629 * 8 7 6 10 10 C 1.50703 * 109.54010 * 176.93379 * 8 7 6 11 11 O 1.21276 * 120.00448 * 333.92564 * 10 8 7 12 12 N 1.34776 * 119.99261 * 153.92546 * 10 8 7 13 13 C 1.47069 * 136.06479 * 4.62288 * 12 10 8 14 14 C 1.53233 * 88.08573 * 207.20996 * 13 12 10 15 15 O 1.42899 * 114.20166 * 87.72943 * 14 13 12 16 16 C 1.50704 * 114.32286 * 220.47440 * 14 13 12 17 17 H 1.07999 * 120.00578 * 93.75519 * 16 14 13 18 18 C 1.37880 * 119.99596 * 273.75666 * 16 14 13 19 19 N 1.31512 * 120.00086 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99782 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47262 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47345 * 120.00201 * 20 18 16 23 23 H 1.48504 * 109.46936 * 239.99628 * 20 18 16 24 24 C 1.47070 * 136.05554 * 184.99981 * 12 10 8 25 25 H 1.09009 * 109.46713 * 299.83706 * 1 2 3 26 26 H 1.08991 * 109.47363 * 59.84102 * 1 2 3 27 27 H 1.09003 * 109.46851 * 179.84798 * 1 2 3 28 28 H 1.08998 * 109.48925 * 57.68156 * 4 2 1 29 29 H 1.09004 * 109.48033 * 177.70974 * 4 2 1 30 30 H 1.09004 * 109.48392 * 301.16275 * 6 5 4 31 31 H 1.09001 * 109.48637 * 181.13671 * 6 5 4 32 32 H 1.08992 * 109.52076 * 62.29348 * 7 6 5 33 33 H 1.09002 * 109.52258 * 182.41926 * 7 6 5 34 34 H 1.09003 * 113.46639 * 321.94601 * 13 12 10 35 35 H 1.09004 * 113.46506 * 92.37693 * 13 12 10 36 36 H 0.96698 * 113.99704 * 86.30178 * 15 14 13 37 37 H 0.97004 * 119.99942 * 179.97438 * 19 18 16 38 38 H 1.08996 * 113.47023 * 267.62411 * 24 12 10 39 39 H 1.09009 * 113.46563 * 38.00001 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0415 -0.7248 -1.2477 5 8 1.6098 -2.0869 -1.2165 6 6 2.0971 -2.8277 -0.0959 7 6 1.5878 -2.1873 1.1981 8 6 2.0420 -0.7253 1.2483 9 1 3.1308 -0.6823 1.2740 10 6 1.4821 -0.0655 2.4821 11 8 0.4598 -0.4840 2.9826 12 7 2.1176 0.9896 3.0292 13 6 3.2861 1.8152 2.6888 14 6 3.4608 2.0940 4.1854 15 8 4.2556 1.1256 4.8728 16 6 3.8394 3.5157 4.5119 17 1 3.0726 4.2373 4.7518 18 6 5.1650 3.8951 4.5042 19 7 6.0988 3.0162 4.2125 20 14 5.6344 5.6571 4.9096 21 1 4.4077 6.4417 5.2008 22 1 6.5253 5.6712 6.0976 23 1 6.3435 6.2593 3.7520 24 6 1.9516 1.8180 4.2330 25 1 -0.3633 0.5114 0.8915 26 1 -0.3633 0.5162 -0.8885 27 1 -0.3633 -1.0277 -0.0027 28 1 1.6453 -0.2382 -2.1389 29 1 3.1308 -0.6890 -1.2679 30 1 3.1871 -2.8196 -0.1009 31 1 1.7410 -3.8560 -0.1571 32 1 0.4990 -2.2315 1.2223 33 1 1.9934 -2.7252 2.0550 34 1 4.1086 1.2457 2.2559 35 1 3.0359 2.7030 2.1080 36 1 5.2057 1.3025 4.8408 37 1 7.0313 3.2833 4.2067 38 1 1.3423 2.7065 4.0679 39 1 1.6406 1.2510 5.1106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256345933.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:14 Heat of formation + Delta-G solvation = -103.664009 kcal Electronic energy + Delta-G solvation = -21790.408323 eV Core-core repulsion = 18506.064861 eV Total energy + Delta-G solvation = -3284.343461 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35919 -39.01409 -37.30456 -34.13163 -34.03255 -32.23140 -31.77232 -29.01546 -27.04781 -26.02500 -25.15559 -24.63790 -22.96014 -20.57288 -19.16354 -18.14572 -17.44628 -16.51212 -16.31290 -15.91506 -15.37561 -15.21145 -15.07537 -14.43426 -14.18236 -13.99690 -13.53065 -13.06235 -12.78422 -12.49614 -12.43926 -11.93705 -11.86437 -11.64336 -11.60651 -11.32248 -11.22330 -11.10404 -10.98216 -10.51459 -10.48929 -10.31058 -10.21693 -9.78667 -9.48923 -9.08324 -8.79920 -8.41103 -7.86978 -6.44684 -4.54884 3.10316 3.15952 3.20235 3.23973 3.52164 3.85675 4.14629 4.71033 4.73316 4.77302 4.83612 4.97278 5.13259 5.29887 5.44560 5.48292 5.58714 5.59831 5.62103 5.69968 5.81559 5.90224 5.92164 6.12017 6.16335 6.17768 6.27341 6.37256 6.46261 6.50219 6.61729 6.66665 7.07331 7.15115 7.58927 7.76692 8.47726 8.51924 8.76905 9.16824 9.44632 10.62079 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029917 B = 0.004885 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.697979 B = 5730.337969 C = 5906.864118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.069 3.931 5 O -0.381 6.381 6 C 0.062 3.938 7 C -0.139 4.139 8 C -0.098 4.098 9 H 0.088 0.912 10 C 0.544 3.456 11 O -0.562 6.562 12 N -0.635 5.635 13 C 0.073 3.927 14 C 0.239 3.761 15 O -0.572 6.572 16 C -0.533 4.533 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.106 3.894 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.394 0.606 37 H 0.273 0.727 38 H 0.084 0.916 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.472 -5.006 -9.127 10.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.101 0.899 4 C -0.008 4.008 5 O -0.300 6.300 6 C -0.015 4.015 7 C -0.177 4.177 8 C -0.119 4.119 9 H 0.106 0.894 10 C 0.334 3.666 11 O -0.442 6.442 12 N -0.368 5.368 13 C -0.050 4.050 14 C 0.197 3.803 15 O -0.385 6.385 16 C -0.571 4.571 17 H 0.091 0.909 18 C -0.131 4.131 19 N -0.540 5.540 20 Si 0.736 3.264 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.016 4.016 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.250 0.750 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.602 -5.770 -8.994 11.635 hybrid contribution 1.199 1.373 0.267 1.842 sum -3.404 -4.397 -8.727 10.348 Atomic orbital electron populations 1.21795 0.93804 1.02783 1.01579 1.21661 0.97795 0.99949 0.93962 0.89870 1.22606 0.98418 0.82298 0.97503 1.87902 1.74257 1.22424 1.45390 1.22605 0.98012 0.95493 0.85349 1.22074 1.03468 0.93873 0.98261 1.21247 1.01395 0.95960 0.93309 0.89355 1.19830 0.83022 0.79493 0.84293 1.90619 1.24351 1.65129 1.64087 1.49760 1.31596 1.28826 1.26570 1.24134 0.85405 0.91987 1.03473 1.19505 0.86516 0.87856 0.86408 1.86044 1.24858 1.51191 1.76408 1.21480 0.93075 0.94195 1.48329 0.90886 1.25079 0.96103 0.98715 0.93156 1.69267 1.01359 1.34751 1.48590 0.86261 0.78738 0.83196 0.78235 1.19390 1.20584 1.20649 1.23316 0.99048 0.92441 0.86798 0.92265 0.92886 0.91644 0.88635 0.92952 0.93149 0.88703 0.89538 0.90685 0.91909 0.90127 0.74977 0.91616 0.89847 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.40 37.16 0.31 -1.69 16 2 C -0.11 -1.57 2.78 -90.48 -0.25 -1.82 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 4 C 0.07 0.80 6.25 37.20 0.23 1.03 16 5 O -0.38 -4.92 10.19 -35.23 -0.36 -5.28 16 6 C 0.06 0.73 6.84 37.21 0.25 0.98 16 7 C -0.14 -1.97 4.66 -26.59 -0.12 -2.09 16 8 C -0.10 -1.54 2.23 -91.59 -0.20 -1.75 16 9 H 0.09 1.38 7.99 -51.93 -0.41 0.97 16 10 C 0.54 10.88 6.12 -10.98 -0.07 10.81 16 11 O -0.56 -12.67 16.11 5.56 0.09 -12.58 16 12 N -0.63 -13.29 3.69 -185.39 -0.68 -13.97 16 13 C 0.07 1.53 7.78 -8.65 -0.07 1.47 16 14 C 0.24 5.65 1.57 -91.39 -0.14 5.51 16 15 O -0.57 -14.60 13.54 -35.23 -0.48 -15.07 16 16 C -0.53 -13.11 8.69 -34.44 -0.30 -13.41 16 17 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 18 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 19 N -0.90 -22.34 11.01 55.43 0.61 -21.73 16 20 Si 0.91 19.07 29.54 -169.99 -5.02 14.05 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 24 C 0.11 2.32 8.04 -8.52 -0.07 2.25 16 25 H 0.06 0.97 6.74 -51.92 -0.35 0.62 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.94 6.14 -51.93 -0.32 0.63 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 1.33 6.25 -51.93 -0.32 1.01 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 35 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 36 H 0.39 10.13 6.32 45.56 0.29 10.42 16 37 H 0.27 6.43 8.31 -40.82 -0.34 6.10 16 38 H 0.08 1.68 8.10 -51.93 -0.42 1.26 16 39 H 0.06 1.46 8.14 -51.92 -0.42 1.04 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -27.84 313.09 -6.95 -34.79 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.31 Total: 12.13 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.52 Total: 2.95 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.07 Total: -35.70 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.75 Total: -32.93 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.84 -6.95 -34.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256345933.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.875 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds