Wall clock time and date at job start Mon Mar 30 2020 01:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.57245 * 2 1 4 4 C 1.53090 * 109.51985 * 239.84877 * 2 1 3 5 5 O 1.42925 * 109.41879 * 297.69688 * 4 2 1 6 6 C 1.42900 * 114.08813 * 298.85197 * 5 4 2 7 7 C 1.53097 * 109.42163 * 61.14994 * 6 5 4 8 8 C 1.53176 * 109.16363 * 302.38360 * 7 6 5 9 9 H 1.08992 * 109.55015 * 297.11629 * 8 7 6 10 10 C 1.50703 * 109.54010 * 176.93379 * 8 7 6 11 11 O 1.21276 * 120.00448 * 333.92564 * 10 8 7 12 12 N 1.34776 * 119.99261 * 153.92546 * 10 8 7 13 13 C 1.47069 * 136.06479 * 4.62288 * 12 10 8 14 14 C 1.53233 * 88.08573 * 207.20996 * 13 12 10 15 15 O 1.42899 * 114.20166 * 87.72943 * 14 13 12 16 16 C 1.50704 * 114.32286 * 220.47440 * 14 13 12 17 17 H 1.07999 * 120.00578 * 93.75519 * 16 14 13 18 18 C 1.37880 * 119.99596 * 273.75666 * 16 14 13 19 19 N 1.31512 * 120.00086 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99782 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47262 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47345 * 120.00201 * 20 18 16 23 23 H 1.48504 * 109.46936 * 239.99628 * 20 18 16 24 24 C 1.47070 * 136.05554 * 184.99981 * 12 10 8 25 25 H 1.09009 * 109.46713 * 299.83706 * 1 2 3 26 26 H 1.08991 * 109.47363 * 59.84102 * 1 2 3 27 27 H 1.09003 * 109.46851 * 179.84798 * 1 2 3 28 28 H 1.08998 * 109.48925 * 57.68156 * 4 2 1 29 29 H 1.09004 * 109.48033 * 177.70974 * 4 2 1 30 30 H 1.09004 * 109.48392 * 301.16275 * 6 5 4 31 31 H 1.09001 * 109.48637 * 181.13671 * 6 5 4 32 32 H 1.08992 * 109.52076 * 62.29348 * 7 6 5 33 33 H 1.09002 * 109.52258 * 182.41926 * 7 6 5 34 34 H 1.09003 * 113.46639 * 321.94601 * 13 12 10 35 35 H 1.09004 * 113.46506 * 92.37693 * 13 12 10 36 36 H 0.96698 * 113.99704 * 86.30178 * 15 14 13 37 37 H 0.97004 * 119.99942 * 179.97438 * 19 18 16 38 38 H 1.08996 * 113.47023 * 267.62411 * 24 12 10 39 39 H 1.09009 * 113.46563 * 38.00001 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0415 -0.7248 -1.2477 5 8 1.6098 -2.0869 -1.2165 6 6 2.0971 -2.8277 -0.0959 7 6 1.5878 -2.1873 1.1981 8 6 2.0420 -0.7253 1.2483 9 1 3.1308 -0.6823 1.2740 10 6 1.4821 -0.0655 2.4821 11 8 0.4598 -0.4840 2.9826 12 7 2.1176 0.9896 3.0292 13 6 3.2861 1.8152 2.6888 14 6 3.4608 2.0940 4.1854 15 8 4.2556 1.1256 4.8728 16 6 3.8394 3.5157 4.5119 17 1 3.0726 4.2373 4.7518 18 6 5.1650 3.8951 4.5042 19 7 6.0988 3.0162 4.2125 20 14 5.6344 5.6571 4.9096 21 1 4.4077 6.4417 5.2008 22 1 6.5253 5.6712 6.0976 23 1 6.3435 6.2593 3.7520 24 6 1.9516 1.8180 4.2330 25 1 -0.3633 0.5114 0.8915 26 1 -0.3633 0.5162 -0.8885 27 1 -0.3633 -1.0277 -0.0027 28 1 1.6453 -0.2382 -2.1389 29 1 3.1308 -0.6890 -1.2679 30 1 3.1871 -2.8196 -0.1009 31 1 1.7410 -3.8560 -0.1571 32 1 0.4990 -2.2315 1.2223 33 1 1.9934 -2.7252 2.0550 34 1 4.1086 1.2457 2.2559 35 1 3.0359 2.7030 2.1080 36 1 5.2057 1.3025 4.8408 37 1 7.0313 3.2833 4.2067 38 1 1.3423 2.7065 4.0679 39 1 1.6406 1.2510 5.1106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256345933.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:13 Heat of formation + Delta-G solvation = -123.229018 kcal Electronic energy + Delta-G solvation = -21791.256725 eV Core-core repulsion = 18506.064861 eV Total energy + Delta-G solvation = -3285.191864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.76964 -40.43861 -38.87059 -35.90937 -35.29496 -34.13910 -32.83352 -30.69892 -28.30986 -27.44827 -26.88341 -26.03261 -24.02791 -22.18868 -20.54578 -19.74053 -19.16215 -18.01908 -17.63250 -17.11350 -16.97064 -16.67056 -16.28129 -16.00931 -15.65818 -15.49295 -14.80907 -14.63344 -14.27205 -14.03340 -13.87997 -13.55510 -13.43154 -13.02428 -12.82301 -12.78672 -12.64894 -12.46649 -12.25605 -12.24352 -12.13162 -11.62085 -11.43213 -11.27896 -10.92939 -10.70021 -10.45810 -10.17322 -9.60721 -8.29170 -6.46067 1.45259 1.50286 1.58616 1.60970 1.93448 2.39983 2.92398 2.94725 3.37737 3.60262 3.63354 3.73717 3.92239 4.07380 4.12845 4.19839 4.36869 4.43379 4.48513 4.54104 4.57842 4.68455 4.73655 4.74822 4.77643 4.84462 4.89149 4.93252 5.04982 5.11603 5.12503 5.22572 5.36914 5.71692 5.89385 6.22858 6.60023 6.86672 7.13331 7.28324 7.47232 8.77363 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029917 B = 0.004885 C = 0.004739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.697979 B = 5730.337969 C = 5906.864118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.085 0.915 4 C 0.071 3.929 5 O -0.390 6.390 6 C 0.067 3.933 7 C -0.136 4.136 8 C -0.094 4.094 9 H 0.092 0.908 10 C 0.538 3.462 11 O -0.592 6.592 12 N -0.638 5.638 13 C 0.090 3.910 14 C 0.219 3.781 15 O -0.587 6.587 16 C -0.552 4.552 17 H 0.073 0.927 18 C 0.034 3.966 19 N -0.917 5.917 20 Si 0.970 3.030 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.275 1.275 24 C 0.104 3.896 25 H 0.028 0.972 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.390 0.610 37 H 0.277 0.723 38 H 0.099 0.901 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 -4.642 -10.867 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.103 0.897 4 C -0.006 4.006 5 O -0.309 6.309 6 C -0.010 4.010 7 C -0.174 4.174 8 C -0.115 4.115 9 H 0.110 0.890 10 C 0.329 3.671 11 O -0.474 6.474 12 N -0.371 5.371 13 C -0.033 4.033 14 C 0.178 3.822 15 O -0.400 6.400 16 C -0.590 4.590 17 H 0.091 0.909 18 C -0.167 4.167 19 N -0.558 5.558 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.201 1.201 24 C -0.018 4.018 25 H 0.047 0.953 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.246 0.754 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.095 -5.413 -10.748 12.712 hybrid contribution 1.004 1.235 0.870 1.814 sum -3.091 -4.178 -9.878 11.162 Atomic orbital electron populations 1.21732 0.94246 1.02248 1.01167 1.21712 0.97354 1.00155 0.93920 0.89683 1.22713 0.99295 0.81633 0.96913 1.87902 1.74613 1.22925 1.45460 1.22672 0.98802 0.96030 0.83474 1.22074 1.02482 0.92995 0.99876 1.21326 1.01360 0.96787 0.92072 0.88951 1.20685 0.82532 0.78765 0.85083 1.90596 1.25812 1.65767 1.65267 1.49844 1.31727 1.29236 1.26273 1.23909 0.85311 0.92350 1.01715 1.19769 0.86975 0.87438 0.88066 1.86029 1.24765 1.52006 1.77172 1.21678 0.93572 0.94627 1.49106 0.90879 1.25749 0.95953 1.02087 0.92879 1.69320 1.01668 1.36112 1.48722 0.85312 0.78236 0.79055 0.77857 1.19179 1.20798 1.20060 1.23318 0.98351 0.93141 0.87019 0.95271 0.90574 0.92263 0.86419 0.91606 0.91722 0.86679 0.91125 0.91200 0.91839 0.88828 0.75437 0.91287 0.88268 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.40 71.98 0.60 -3.09 16 2 C -0.11 -2.86 2.78 -10.70 -0.03 -2.89 16 3 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.07 1.43 6.25 72.01 0.45 1.88 16 5 O -0.39 -8.92 10.19 -148.98 -1.52 -10.44 16 6 C 0.07 1.40 6.84 72.01 0.49 1.89 16 7 C -0.14 -3.74 4.66 30.69 0.14 -3.59 16 8 C -0.09 -2.88 2.23 -11.42 -0.03 -2.91 16 9 H 0.09 2.76 7.99 -2.39 -0.02 2.74 16 10 C 0.54 21.57 6.12 87.66 0.54 22.11 16 11 O -0.59 -27.25 16.11 -3.02 -0.05 -27.30 16 12 N -0.64 -26.73 3.69 -859.32 -3.17 -29.90 16 13 C 0.09 3.72 7.78 83.08 0.65 4.37 16 14 C 0.22 10.38 1.57 -11.29 -0.02 10.37 16 15 O -0.59 -30.38 13.54 -148.98 -2.02 -32.40 16 16 C -0.55 -27.00 8.69 25.60 0.22 -26.78 16 17 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 18 C 0.03 1.62 5.39 84.66 0.46 2.08 16 19 N -0.92 -45.14 11.01 21.45 0.24 -44.91 16 20 Si 0.97 38.39 29.54 68.60 2.03 40.42 16 21 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 22 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 23 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 24 C 0.10 4.61 8.04 83.17 0.67 5.28 16 25 H 0.03 0.94 6.74 -2.38 -0.02 0.93 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.66 6.14 -2.39 -0.01 1.65 16 28 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 1.18 8.14 -2.38 -0.02 1.17 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.16 6.25 -2.39 -0.01 2.15 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 34 H 0.06 2.60 8.05 -2.39 -0.02 2.58 16 35 H 0.09 3.61 8.10 -2.38 -0.02 3.59 16 36 H 0.39 20.35 6.32 -74.06 -0.47 19.88 16 37 H 0.28 12.84 8.31 -92.71 -0.77 12.07 16 38 H 0.10 3.99 8.10 -2.39 -0.02 3.97 16 39 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -58.96 313.09 0.24 -58.73 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.58 Total: 37.09 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 4.15 Total: 8.70 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -2.94 Total: -74.81 kcal Atomic # 8 Polarization: -66.55 SS G_CDS: -3.58 Total: -70.14 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -58.96 0.24 -58.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256345933.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.503 kcal (2) G-P(sol) polarization free energy of solvation -58.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds