Wall clock time and date at job start Mon Mar 30 2020 01:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 110.33089 * 2 1 4 4 C 1.54472 * 110.37284 * 237.63165 * 2 1 3 5 5 C 1.54510 * 104.06450 * 217.19024 * 4 2 1 6 6 H 1.09000 * 110.62673 * 118.70266 * 5 4 2 7 7 C 1.50699 * 110.51116 * 241.35676 * 5 4 2 8 8 O 1.21285 * 119.99879 * 114.64324 * 7 5 4 9 9 N 1.34775 * 120.00193 * 294.63708 * 7 5 4 10 10 C 1.47580 * 134.49629 * 180.02562 * 9 7 5 11 11 C 1.53946 * 86.24073 * 155.42618 * 10 9 7 12 12 O 1.42901 * 113.74303 * 269.20417 * 11 10 9 13 13 C 1.50706 * 113.73932 * 138.00220 * 11 10 9 14 14 H 1.07998 * 119.99834 * 0.02562 * 13 11 10 15 15 C 1.37874 * 119.99551 * 179.97438 * 13 11 10 16 16 N 1.31510 * 120.00667 * 0.02562 * 15 13 11 17 17 Si 1.86804 * 119.99431 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47520 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46999 * 120.00440 * 17 15 13 20 20 H 1.48501 * 109.46976 * 240.00106 * 17 15 13 21 21 C 1.47812 * 134.57995 * 359.95741 * 9 7 5 22 22 C 1.54481 * 104.06028 * 359.97438 * 5 4 2 23 23 H 1.08997 * 110.37347 * 265.03570 * 22 5 4 24 24 C 1.52999 * 110.37198 * 142.80898 * 22 5 4 25 25 O 1.44419 * 110.37301 * 122.24822 * 2 1 3 26 26 H 1.09002 * 109.47046 * 299.20452 * 1 2 3 27 27 H 1.09006 * 109.46991 * 59.20164 * 1 2 3 28 28 H 1.09000 * 109.47279 * 179.20262 * 1 2 3 29 29 H 1.09005 * 110.51422 * 98.54494 * 4 2 1 30 30 H 1.08997 * 110.51304 * 335.83676 * 4 2 1 31 31 H 1.09002 * 113.76914 * 41.06930 * 10 9 7 32 32 H 1.09000 * 113.77064 * 269.78402 * 10 9 7 33 33 H 0.96698 * 113.99808 * 179.97438 * 12 11 10 34 34 H 0.96999 * 120.00592 * 179.97438 * 16 15 13 35 35 H 1.08996 * 113.67199 * 90.26545 * 21 9 7 36 36 H 1.08996 * 113.93703 * 318.91196 * 21 9 7 37 37 H 1.09002 * 109.47087 * 59.99921 * 24 22 5 38 38 H 1.08999 * 109.47464 * 180.02562 * 24 22 5 39 39 H 1.09004 * 109.47254 * 300.00135 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7753 -1.2231 5 6 3.3178 -1.5064 -0.6843 6 1 3.1980 -2.5863 -0.7705 7 6 4.5526 -1.0530 -1.4197 8 8 5.4220 -0.4475 -0.8293 9 7 4.6909 -1.3206 -2.7334 10 6 5.7309 -1.0400 -3.7422 11 6 5.1810 -2.2613 -4.5011 12 8 5.8215 -3.4906 -4.1540 13 6 5.0759 -2.0534 -5.9901 14 1 5.3750 -1.1118 -6.4263 15 6 4.5990 -3.0658 -6.7954 16 7 4.2353 -4.2126 -6.2643 17 14 4.4694 -2.8084 -8.6411 18 1 4.9388 -1.4421 -8.9845 19 1 5.3118 -3.8112 -9.3410 20 1 3.0551 -2.9676 -9.0649 21 6 3.8640 -2.0136 -3.7437 22 6 3.3877 -1.0858 0.8005 23 1 4.0545 -0.2322 0.9221 24 6 3.8605 -2.2569 1.6641 25 8 2.0328 -0.7224 1.1450 26 1 -0.3633 0.5014 0.8970 27 1 -0.3633 0.5262 -0.8828 28 1 -0.3634 -1.0276 -0.0143 29 1 2.3430 -0.0860 -2.0215 30 1 1.3276 -1.4935 -1.5757 31 1 6.7480 -1.1733 -3.3734 32 1 5.5896 -0.0958 -4.2680 33 1 5.4786 -4.2603 -4.6284 34 1 3.8995 -4.9247 -6.8308 35 1 3.1721 -1.3554 -4.2691 36 1 3.3899 -2.9243 -3.3780 37 1 4.8512 -2.5726 1.3373 38 1 3.9040 -1.9446 2.7075 39 1 3.1625 -3.0880 1.5628 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261860238.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:34 Heat of formation + Delta-G solvation = -123.882904 kcal Electronic energy + Delta-G solvation = -21582.368018 eV Core-core repulsion = 18297.147800 eV Total energy + Delta-G solvation = -3285.220219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72783 -40.37425 -38.78714 -35.85873 -34.13577 -33.74839 -33.60231 -30.67465 -29.54754 -27.24629 -27.02008 -25.38845 -22.91157 -22.34144 -21.43464 -20.03280 -19.24291 -18.21623 -17.61864 -17.06132 -16.85338 -16.62738 -15.97281 -15.92101 -15.69448 -15.01263 -14.56400 -14.42711 -14.17118 -13.87568 -13.77788 -13.47195 -13.42655 -13.06805 -12.90423 -12.84186 -12.77942 -12.68434 -12.28184 -12.22365 -12.20177 -11.90019 -11.73521 -11.35788 -10.99470 -10.76584 -10.62122 -10.24856 -9.61776 -8.27498 -6.44520 1.45408 1.50541 1.53586 1.60606 1.86580 2.40477 2.70854 2.95240 3.37571 3.48174 3.54771 3.75599 3.87412 4.07269 4.13807 4.18471 4.32722 4.38021 4.45549 4.50595 4.58206 4.62544 4.74088 4.75986 4.82150 4.87705 4.93310 4.95849 5.03028 5.09241 5.15579 5.23679 5.28130 5.72730 5.82637 5.91363 6.61524 6.79443 7.06115 7.29606 7.46576 8.78600 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.004983 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.724780 B = 5617.727403 C = 6080.501885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 H 0.067 0.933 4 C -0.133 4.133 5 C -0.131 4.131 6 H 0.112 0.888 7 C 0.533 3.467 8 O -0.594 6.594 9 N -0.630 5.630 10 C 0.109 3.891 11 C 0.218 3.782 12 O -0.588 6.588 13 C -0.554 4.554 14 H 0.072 0.928 15 C 0.035 3.965 16 N -0.917 5.917 17 Si 0.968 3.032 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.276 1.276 21 C 0.096 3.904 22 C 0.088 3.912 23 H 0.068 0.932 24 C -0.140 4.140 25 O -0.376 6.376 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.389 0.611 34 H 0.276 0.724 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 4.200 7.261 11.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 H 0.085 0.915 4 C -0.171 4.171 5 C -0.153 4.153 6 H 0.130 0.870 7 C 0.324 3.676 8 O -0.476 6.476 9 N -0.363 5.363 10 C -0.013 4.013 11 C 0.177 3.823 12 O -0.401 6.401 13 C -0.592 4.592 14 H 0.090 0.910 15 C -0.166 4.166 16 N -0.557 5.557 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.201 1.201 21 C -0.026 4.026 22 C 0.030 3.970 23 H 0.085 0.915 24 C -0.197 4.197 25 O -0.296 6.296 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.244 0.756 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.749 4.704 8.315 12.301 hybrid contribution 0.109 -0.411 -1.518 1.577 sum -7.640 4.293 6.797 11.090 Atomic orbital electron populations 1.21801 0.90732 1.03506 1.03577 1.23131 0.97033 0.95048 0.83865 0.91514 1.22987 0.95334 1.00021 0.98770 1.22653 0.93093 1.03213 0.96318 0.87033 1.20494 0.88121 0.78283 0.80736 1.90604 1.44928 1.44643 1.67454 1.50216 1.23936 1.55567 1.06565 1.23480 0.92315 0.99354 0.86162 1.20124 0.88066 0.82251 0.91891 1.86043 1.65035 1.19352 1.69664 1.21749 1.44414 1.01262 0.91805 0.90974 1.25719 0.92965 0.94446 1.03476 1.69372 1.43638 1.05059 1.37662 0.85354 0.77848 0.78342 0.79158 1.19211 1.20919 1.20117 1.24138 0.97657 0.95224 0.85590 1.22796 0.84551 0.98530 0.91115 0.91452 1.21755 1.01236 0.96584 1.00104 1.89107 1.26812 1.74734 1.38930 0.91259 0.89343 0.91465 0.90647 0.87988 0.92440 0.87952 0.75598 0.91374 0.88688 0.91405 0.91771 0.90525 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.52 71.98 0.69 -1.76 16 2 C 0.07 1.59 3.92 31.10 0.12 1.71 16 3 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 4 C -0.13 -3.43 5.97 31.61 0.19 -3.24 16 5 C -0.13 -4.09 2.83 -10.52 -0.03 -4.12 16 6 H 0.11 3.36 7.87 -2.39 -0.02 3.34 16 7 C 0.53 21.04 7.17 87.66 0.63 21.67 16 8 O -0.59 -26.91 16.17 -3.05 -0.05 -26.96 16 9 N -0.63 -25.65 3.61 -836.79 -3.02 -28.67 16 10 C 0.11 4.68 8.22 86.48 0.71 5.39 16 11 C 0.22 10.14 1.45 -10.89 -0.02 10.12 16 12 O -0.59 -30.04 13.49 -148.98 -2.01 -32.05 16 13 C -0.55 -26.76 8.63 25.60 0.22 -26.54 16 14 H 0.07 3.40 7.81 -2.91 -0.02 3.37 16 15 C 0.03 1.64 5.39 84.65 0.46 2.10 16 16 N -0.92 -44.75 11.08 21.45 0.24 -44.51 16 17 Si 0.97 38.17 29.54 68.60 2.03 40.20 16 18 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 19 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.28 -10.60 7.11 99.48 0.71 -9.89 16 21 C 0.10 3.88 7.74 86.43 0.67 4.55 16 22 C 0.09 2.63 3.28 31.10 0.10 2.73 16 23 H 0.07 2.29 6.90 -2.39 -0.02 2.28 16 24 C -0.14 -3.60 9.52 71.98 0.68 -2.91 16 25 O -0.38 -10.56 11.04 -148.98 -1.64 -12.20 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 29 H 0.07 2.03 7.73 -2.38 -0.02 2.01 16 30 H 0.10 2.29 7.86 -2.39 -0.02 2.27 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.10 3.97 8.09 -2.39 -0.02 3.95 16 33 H 0.39 20.07 6.42 -74.06 -0.48 19.59 16 34 H 0.28 12.75 8.31 -92.71 -0.77 11.98 16 35 H 0.10 3.56 8.09 -2.39 -0.02 3.54 16 36 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -57.32 322.22 0.53 -56.80 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: 0.57 Total: 37.70 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 4.42 Total: 9.69 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -2.78 Total: -73.18 kcal Atomic # 8 Polarization: -67.50 SS G_CDS: -3.70 Total: -71.21 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -57.32 0.53 -56.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261860238.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.086 kcal (2) G-P(sol) polarization free energy of solvation -57.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds