Wall clock time and date at job start Mon Mar 30 2020 01:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.33263 * 2 1 4 4 C 1.54483 * 110.37312 * 237.63097 * 2 1 3 5 5 C 1.54799 * 104.08584 * 217.19726 * 4 2 1 6 6 H 1.08999 * 110.60620 * 241.37174 * 5 4 2 7 7 C 1.50706 * 110.55299 * 118.57202 * 5 4 2 8 8 O 1.21285 * 119.99469 * 327.66628 * 7 5 4 9 9 N 1.34768 * 120.00243 * 147.66303 * 7 5 4 10 10 C 1.47074 * 136.05740 * 359.63384 * 9 7 5 11 11 C 1.53243 * 88.08168 * 207.19983 * 10 9 7 12 12 O 1.42903 * 114.01593 * 87.71212 * 11 10 9 13 13 C 1.50697 * 114.32582 * 220.46970 * 11 10 9 14 14 H 1.07996 * 119.99938 * 93.75886 * 13 11 10 15 15 C 1.37876 * 119.99990 * 273.76112 * 13 11 10 16 16 N 1.31519 * 119.99951 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00144 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47512 * 120.00114 * 17 15 13 20 20 H 1.48506 * 109.47129 * 239.99579 * 17 15 13 21 21 C 1.47066 * 136.05942 * 179.97438 * 9 7 5 22 22 C 1.54475 * 103.92893 * 359.97438 * 5 4 2 23 23 H 1.08998 * 110.37598 * 265.11702 * 22 5 4 24 24 C 1.53001 * 110.37698 * 142.88886 * 22 5 4 25 25 O 1.44424 * 110.37476 * 122.24639 * 2 1 3 26 26 H 1.08997 * 109.46896 * 299.20928 * 1 2 3 27 27 H 1.08999 * 109.47018 * 59.20559 * 1 2 3 28 28 H 1.08994 * 109.46893 * 179.20601 * 1 2 3 29 29 H 1.09000 * 110.50889 * 335.83189 * 4 2 1 30 30 H 1.08996 * 110.51135 * 98.40603 * 4 2 1 31 31 H 1.09003 * 113.46427 * 321.93401 * 10 9 7 32 32 H 1.08995 * 113.46742 * 92.37251 * 10 9 7 33 33 H 0.96700 * 113.99795 * 86.38984 * 12 11 10 34 34 H 0.97003 * 120.00241 * 179.97438 * 16 15 13 35 35 H 1.09002 * 113.47348 * 267.63098 * 21 9 7 36 36 H 1.09008 * 113.46301 * 38.01427 * 21 9 7 37 37 H 1.09002 * 109.47256 * 298.18264 * 24 22 5 38 38 H 1.09003 * 109.46764 * 58.18092 * 24 22 5 39 39 H 1.08995 * 109.47656 * 178.17881 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7753 -1.2232 5 6 3.3202 -1.5082 -0.6838 6 1 4.2143 -1.1812 -1.2147 7 6 3.1511 -3.0011 -0.8012 8 8 2.0497 -3.4970 -0.6919 9 7 4.2236 -3.7850 -1.0277 10 6 5.6667 -3.5757 -1.2194 11 6 5.6912 -4.8643 -2.0485 12 8 5.4059 -4.6692 -3.4351 13 6 6.8936 -5.7385 -1.8017 14 1 6.8410 -6.5371 -1.0766 15 6 8.0610 -5.5188 -2.5017 16 7 8.1250 -4.5465 -3.3851 17 14 9.5513 -6.6028 -2.1964 18 1 9.2225 -7.6164 -1.1621 19 1 9.9322 -7.2875 -3.4578 20 1 10.6842 -5.7658 -1.7260 21 6 4.4653 -5.2257 -1.1980 22 6 3.3876 -1.0860 0.8006 23 1 4.0528 -0.2311 0.9221 24 6 3.8613 -2.2554 1.6660 25 8 2.0329 -0.7224 1.1451 26 1 -0.3633 0.5015 0.8970 27 1 -0.3633 0.5261 -0.8828 28 1 -0.3633 -1.0275 -0.0142 29 1 1.3276 -1.4936 -1.5756 30 1 2.3407 -0.0862 -2.0223 31 1 5.9027 -2.6835 -1.7994 32 1 6.2415 -3.6429 -0.2957 33 1 6.1802 -4.4417 -3.9678 34 1 8.9464 -4.3917 -3.8773 35 1 4.7171 -5.7365 -0.2686 36 1 3.6811 -5.7340 -1.7592 37 1 3.1479 -3.0760 1.5900 38 1 4.8391 -2.5907 1.3200 39 1 3.9345 -1.9326 2.7045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261860240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:39 Heat of formation + Delta-G solvation = -97.836923 kcal Electronic energy + Delta-G solvation = -21757.652407 eV Core-core repulsion = 18473.561626 eV Total energy + Delta-G solvation = -3284.090780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40498 -38.95203 -37.06193 -34.04319 -32.79707 -32.23697 -32.19200 -28.90975 -28.59684 -25.66320 -25.14474 -23.96934 -21.96913 -21.08268 -19.82405 -18.09527 -17.45576 -16.93350 -16.10043 -15.66499 -15.44338 -15.11288 -14.73067 -14.33294 -14.15727 -13.39666 -13.01044 -12.99034 -12.69068 -12.58969 -12.14229 -12.05768 -11.89844 -11.83247 -11.58689 -11.52567 -11.13734 -11.04016 -10.95223 -10.77758 -10.74874 -10.50025 -10.27886 -9.76368 -9.54618 -9.14333 -8.80448 -8.41238 -7.85970 -6.44155 -4.54432 3.10747 3.13597 3.20714 3.24396 3.51860 3.85691 4.15080 4.59408 4.73460 4.80626 4.91876 4.95544 5.13956 5.31883 5.40620 5.41927 5.49399 5.56495 5.62010 5.79507 5.82907 5.90814 5.98647 6.04343 6.11572 6.17743 6.25255 6.31181 6.38703 6.48699 6.61856 6.66739 6.96205 7.07949 7.59430 7.77241 8.48278 8.52580 8.78610 9.17377 9.45576 10.62546 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037477 B = 0.004684 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.943289 B = 5975.748980 C = 6116.768641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 H 0.066 0.934 4 C -0.137 4.137 5 C -0.137 4.137 6 H 0.099 0.901 7 C 0.551 3.449 8 O -0.557 6.557 9 N -0.634 5.634 10 C 0.072 3.928 11 C 0.240 3.760 12 O -0.572 6.572 13 C -0.533 4.533 14 H 0.073 0.927 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.909 3.091 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.281 1.281 21 C 0.106 3.894 22 C 0.092 3.908 23 H 0.076 0.924 24 C -0.155 4.155 25 O -0.364 6.364 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.394 0.606 34 H 0.273 0.727 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 8.645 5.045 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 H 0.084 0.916 4 C -0.175 4.175 5 C -0.159 4.159 6 H 0.118 0.882 7 C 0.340 3.660 8 O -0.437 6.437 9 N -0.367 5.367 10 C -0.051 4.051 11 C 0.198 3.802 12 O -0.385 6.385 13 C -0.571 4.571 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.539 5.539 17 Si 0.736 3.264 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.016 4.016 22 C 0.034 3.966 23 H 0.094 0.906 24 C -0.212 4.212 25 O -0.283 6.283 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.387 8.416 5.392 11.861 hybrid contribution 1.688 -0.162 -0.280 1.718 sum -4.699 8.254 5.112 10.786 Atomic orbital electron populations 1.21787 0.93216 1.03319 1.01926 1.22924 0.95480 0.94811 0.85183 0.91576 1.23044 0.96820 0.99530 0.98119 1.22719 1.00818 0.93924 0.98452 0.88225 1.19494 0.83071 0.87580 0.75868 1.90632 1.24934 1.75615 1.52511 1.49746 1.08159 1.09953 1.68808 1.24164 0.77596 1.03025 1.00353 1.19502 0.90484 0.89877 0.80368 1.86050 1.40805 1.92512 1.19133 1.21479 0.95389 1.16729 1.23496 0.90858 1.25077 0.99185 0.94752 0.94019 1.69271 1.28836 1.30419 1.25418 0.86263 0.81452 0.80260 0.78470 1.19385 1.20598 1.20653 1.23318 0.97798 0.81599 0.98869 1.22765 0.85007 0.97242 0.91581 0.90607 1.21933 1.02071 0.97522 0.99663 1.89158 1.26814 1.74478 1.37860 0.92121 0.91328 0.91328 0.88932 0.90294 0.91876 0.90112 0.74991 0.91623 0.89771 0.91645 0.91215 0.90618 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.52 37.16 0.35 -1.31 16 2 C 0.07 0.96 3.92 -25.95 -0.10 0.86 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.14 -1.97 6.14 -25.01 -0.15 -2.12 16 5 C -0.14 -2.22 3.34 -90.05 -0.30 -2.52 16 6 H 0.10 1.50 7.67 -51.93 -0.40 1.10 16 7 C 0.55 11.15 5.00 -10.99 -0.05 11.10 16 8 O -0.56 -12.95 16.50 5.55 0.09 -12.86 16 9 N -0.63 -13.14 3.50 -185.34 -0.65 -13.79 16 10 C 0.07 1.49 7.40 -8.63 -0.06 1.42 16 11 C 0.24 5.64 1.57 -91.38 -0.14 5.49 16 12 O -0.57 -14.60 13.53 -35.23 -0.48 -15.08 16 13 C -0.53 -13.06 8.69 -34.44 -0.30 -13.36 16 14 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 15 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 16 N -0.90 -22.27 11.01 55.43 0.61 -21.66 16 17 Si 0.91 19.02 29.54 -169.99 -5.02 14.00 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 C 0.11 2.31 8.04 -8.50 -0.07 2.24 16 22 C 0.09 1.36 3.83 -25.96 -0.10 1.26 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 C -0.15 -2.32 8.60 37.16 0.32 -2.00 16 25 O -0.36 -5.76 11.04 -35.23 -0.39 -6.15 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.91 8.12 -51.93 -0.42 0.48 16 29 H 0.09 1.52 6.71 -51.93 -0.35 1.17 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 32 H 0.08 1.57 8.04 -51.93 -0.42 1.15 16 33 H 0.39 10.12 6.33 45.56 0.29 10.41 16 34 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 36 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 37 H 0.07 1.23 7.01 -51.93 -0.36 0.87 16 38 H 0.07 1.11 7.69 -51.93 -0.40 0.72 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -28.37 318.62 -7.14 -35.51 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -5.40 Total: 12.52 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -0.71 Total: 2.72 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.04 Total: -35.46 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -0.77 Total: -34.09 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.37 -7.14 -35.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261860240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.325 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds