Wall clock time and date at job start Mon Mar 30 2020 01:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 110.33263 * 2 1 4 4 C 1.54483 * 110.37312 * 237.63097 * 2 1 3 5 5 C 1.54799 * 104.08584 * 217.19726 * 4 2 1 6 6 H 1.08999 * 110.60620 * 241.37174 * 5 4 2 7 7 C 1.50706 * 110.55299 * 118.57202 * 5 4 2 8 8 O 1.21285 * 119.99469 * 327.66628 * 7 5 4 9 9 N 1.34768 * 120.00243 * 147.66303 * 7 5 4 10 10 C 1.47074 * 136.05740 * 359.63384 * 9 7 5 11 11 C 1.53243 * 88.08168 * 207.19983 * 10 9 7 12 12 O 1.42903 * 114.01593 * 87.71212 * 11 10 9 13 13 C 1.50697 * 114.32582 * 220.46970 * 11 10 9 14 14 H 1.07996 * 119.99938 * 93.75886 * 13 11 10 15 15 C 1.37876 * 119.99990 * 273.76112 * 13 11 10 16 16 N 1.31519 * 119.99951 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00144 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47512 * 120.00114 * 17 15 13 20 20 H 1.48506 * 109.47129 * 239.99579 * 17 15 13 21 21 C 1.47066 * 136.05942 * 179.97438 * 9 7 5 22 22 C 1.54475 * 103.92893 * 359.97438 * 5 4 2 23 23 H 1.08998 * 110.37598 * 265.11702 * 22 5 4 24 24 C 1.53001 * 110.37698 * 142.88886 * 22 5 4 25 25 O 1.44424 * 110.37476 * 122.24639 * 2 1 3 26 26 H 1.08997 * 109.46896 * 299.20928 * 1 2 3 27 27 H 1.08999 * 109.47018 * 59.20559 * 1 2 3 28 28 H 1.08994 * 109.46893 * 179.20601 * 1 2 3 29 29 H 1.09000 * 110.50889 * 335.83189 * 4 2 1 30 30 H 1.08996 * 110.51135 * 98.40603 * 4 2 1 31 31 H 1.09003 * 113.46427 * 321.93401 * 10 9 7 32 32 H 1.08995 * 113.46742 * 92.37251 * 10 9 7 33 33 H 0.96700 * 113.99795 * 86.38984 * 12 11 10 34 34 H 0.97003 * 120.00241 * 179.97438 * 16 15 13 35 35 H 1.09002 * 113.47348 * 267.63098 * 21 9 7 36 36 H 1.09008 * 113.46301 * 38.01427 * 21 9 7 37 37 H 1.09002 * 109.47256 * 298.18264 * 24 22 5 38 38 H 1.09003 * 109.46764 * 58.18092 * 24 22 5 39 39 H 1.08995 * 109.47656 * 178.17881 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7753 -1.2232 5 6 3.3202 -1.5082 -0.6838 6 1 4.2143 -1.1812 -1.2147 7 6 3.1511 -3.0011 -0.8012 8 8 2.0497 -3.4970 -0.6919 9 7 4.2236 -3.7850 -1.0277 10 6 5.6667 -3.5757 -1.2194 11 6 5.6912 -4.8643 -2.0485 12 8 5.4059 -4.6692 -3.4351 13 6 6.8936 -5.7385 -1.8017 14 1 6.8410 -6.5371 -1.0766 15 6 8.0610 -5.5188 -2.5017 16 7 8.1250 -4.5465 -3.3851 17 14 9.5513 -6.6028 -2.1964 18 1 9.2225 -7.6164 -1.1621 19 1 9.9322 -7.2875 -3.4578 20 1 10.6842 -5.7658 -1.7260 21 6 4.4653 -5.2257 -1.1980 22 6 3.3876 -1.0860 0.8006 23 1 4.0528 -0.2311 0.9221 24 6 3.8613 -2.2554 1.6660 25 8 2.0329 -0.7224 1.1451 26 1 -0.3633 0.5015 0.8970 27 1 -0.3633 0.5261 -0.8828 28 1 -0.3633 -1.0275 -0.0142 29 1 1.3276 -1.4936 -1.5756 30 1 2.3407 -0.0862 -2.0223 31 1 5.9027 -2.6835 -1.7994 32 1 6.2415 -3.6429 -0.2957 33 1 6.1802 -4.4417 -3.9678 34 1 8.9464 -4.3917 -3.8773 35 1 4.7171 -5.7365 -0.2686 36 1 3.6811 -5.7340 -1.7592 37 1 3.1479 -3.0760 1.5900 38 1 4.8391 -2.5907 1.3200 39 1 3.9345 -1.9326 2.7045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261860240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:38 Heat of formation + Delta-G solvation = -117.991968 kcal Electronic energy + Delta-G solvation = -21758.526395 eV Core-core repulsion = 18473.561626 eV Total energy + Delta-G solvation = -3284.964768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82982 -40.44596 -38.68305 -35.90236 -34.13269 -33.91638 -33.40967 -30.43448 -29.86821 -27.39602 -26.85978 -25.19761 -23.29676 -22.19182 -21.45769 -19.76427 -19.19003 -18.32993 -17.45222 -17.25976 -16.88271 -16.56516 -16.26504 -15.93822 -15.65125 -14.92123 -14.53904 -14.28573 -14.19711 -13.90780 -13.69026 -13.42045 -13.31724 -13.22333 -12.87443 -12.80045 -12.74723 -12.63080 -12.27670 -12.22179 -12.12083 -11.91086 -11.77425 -11.35370 -10.96048 -10.72911 -10.59662 -10.21659 -9.58942 -8.27968 -6.44779 1.46078 1.51255 1.58114 1.61589 1.93145 2.40961 2.78186 2.94232 3.32384 3.49721 3.67551 3.78244 3.91153 4.09755 4.13661 4.22660 4.27927 4.36302 4.42297 4.47935 4.55452 4.61750 4.73378 4.75358 4.82347 4.86808 4.91542 4.95734 5.02202 5.10091 5.13666 5.24824 5.27770 5.72995 5.90265 5.91131 6.61416 6.88140 7.15453 7.29670 7.48881 8.78494 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037477 B = 0.004684 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.943289 B = 5975.748980 C = 6116.768641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 H 0.100 0.900 4 C -0.137 4.137 5 C -0.138 4.138 6 H 0.114 0.886 7 C 0.545 3.455 8 O -0.595 6.595 9 N -0.634 5.634 10 C 0.089 3.911 11 C 0.219 3.781 12 O -0.588 6.588 13 C -0.552 4.552 14 H 0.073 0.927 15 C 0.035 3.965 16 N -0.917 5.917 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.275 1.275 21 C 0.104 3.896 22 C 0.093 3.907 23 H 0.112 0.888 24 C -0.152 4.152 25 O -0.387 6.387 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.390 0.610 34 H 0.277 0.723 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 10.346 5.768 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.014 3.986 3 H 0.117 0.883 4 C -0.175 4.175 5 C -0.160 4.160 6 H 0.132 0.868 7 C 0.336 3.664 8 O -0.477 6.477 9 N -0.367 5.367 10 C -0.033 4.033 11 C 0.178 3.822 12 O -0.401 6.401 13 C -0.590 4.590 14 H 0.092 0.908 15 C -0.166 4.166 16 N -0.558 5.558 17 Si 0.795 3.205 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.200 1.200 21 C -0.019 4.019 22 C 0.035 3.965 23 H 0.130 0.870 24 C -0.209 4.209 25 O -0.308 6.308 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.380 10.128 6.121 13.000 hybrid contribution 1.317 -0.724 -0.536 1.596 sum -4.064 9.404 5.585 11.668 Atomic orbital electron populations 1.21812 0.92529 1.02084 1.03677 1.23187 0.96196 0.95739 0.83493 0.88263 1.23101 0.95299 0.99432 0.99686 1.22842 1.02338 0.90502 1.00296 0.86762 1.20326 0.82132 0.89340 0.74553 1.90608 1.26291 1.76732 1.54066 1.49796 1.08509 1.09440 1.68932 1.23945 0.77520 1.01524 1.00348 1.19774 0.91026 0.91698 0.79751 1.86036 1.40859 1.92733 1.20453 1.21678 0.96039 1.17249 1.24017 0.90845 1.25734 1.01371 0.95745 0.93740 1.69322 1.29521 1.31206 1.25732 0.85322 0.78476 0.78683 0.78038 1.19194 1.20883 1.20044 1.23329 0.96719 0.82633 0.99178 1.22930 0.85397 0.98130 0.90016 0.87043 1.21905 1.01032 0.96737 1.01239 1.89141 1.27439 1.75111 1.39067 0.91022 0.88917 0.94057 0.91790 0.87374 0.91672 0.88564 0.75440 0.91306 0.88101 0.93366 0.94675 0.90467 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.52 71.98 0.69 -2.38 16 2 C 0.07 1.67 3.92 31.10 0.12 1.79 16 3 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 4 C -0.14 -3.70 6.14 31.71 0.19 -3.50 16 5 C -0.14 -4.24 3.34 -10.42 -0.03 -4.28 16 6 H 0.11 3.15 7.67 -2.39 -0.02 3.13 16 7 C 0.54 22.13 5.00 87.66 0.44 22.57 16 8 O -0.59 -28.45 16.50 -3.05 -0.05 -28.50 16 9 N -0.63 -26.28 3.50 -859.17 -3.01 -29.29 16 10 C 0.09 3.62 7.40 83.09 0.61 4.24 16 11 C 0.22 10.32 1.57 -11.29 -0.02 10.30 16 12 O -0.59 -30.44 13.53 -148.98 -2.02 -32.45 16 13 C -0.55 -26.86 8.69 25.60 0.22 -26.63 16 14 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 15 C 0.03 1.65 5.40 84.65 0.46 2.11 16 16 N -0.92 -44.91 11.01 21.45 0.24 -44.68 16 17 Si 0.97 38.27 29.54 68.60 2.03 40.30 16 18 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 19 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 21 C 0.10 4.58 8.04 83.19 0.67 5.25 16 22 C 0.09 2.53 3.83 31.10 0.12 2.65 16 23 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 24 C -0.15 -4.36 8.60 71.98 0.62 -3.74 16 25 O -0.39 -11.55 11.04 -148.98 -1.64 -13.19 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.09 8.12 -2.39 -0.02 1.07 16 29 H 0.06 2.10 6.71 -2.39 -0.02 2.09 16 30 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 2.61 7.93 -2.39 -0.02 2.59 16 32 H 0.10 3.59 8.04 -2.39 -0.02 3.57 16 33 H 0.39 20.31 6.33 -74.06 -0.47 19.85 16 34 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 35 H 0.10 4.02 8.10 -2.39 -0.02 4.00 16 36 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.03 1.23 7.01 -2.39 -0.02 1.22 16 38 H 0.08 2.15 7.69 -2.39 -0.02 2.13 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -61.35 318.62 0.21 -61.15 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.58 Total: 38.30 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 4.09 Total: 8.37 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -2.77 Total: -73.97 kcal Atomic # 8 Polarization: -70.43 SS G_CDS: -3.71 Total: -74.14 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -61.35 0.21 -61.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261860240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.844 kcal (2) G-P(sol) polarization free energy of solvation -61.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds