Wall clock time and date at job start Mon Mar 30 2020 01:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47304 * 2 1 4 4 C 1.50706 * 109.46895 * 120.00175 * 2 1 3 5 5 H 1.08001 * 119.99946 * 120.00300 * 4 2 1 6 6 C 1.37878 * 119.99697 * 299.99237 * 4 2 1 7 7 N 1.31511 * 120.00262 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99694 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47384 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46908 * 120.00321 * 8 6 4 11 11 H 1.48501 * 109.47089 * 240.00315 * 8 6 4 12 12 N 1.46505 * 109.46908 * 239.99571 * 2 1 3 13 13 C 1.34776 * 119.99901 * 85.00125 * 12 2 1 14 14 O 1.21622 * 119.99857 * 359.97438 * 13 12 2 15 15 C 1.47097 * 120.00135 * 179.97438 * 13 12 2 16 16 C 1.32996 * 119.99976 * 180.02562 * 15 13 12 17 17 C 1.50699 * 119.99849 * 180.02562 * 16 15 13 18 18 H 1.08994 * 110.62138 * 356.92279 * 17 16 15 19 19 C 1.54919 * 110.69428 * 119.99981 * 17 16 15 20 20 O 1.44785 * 101.71938 * 154.13152 * 19 17 16 21 21 C 1.43755 * 104.81505 * 323.89401 * 20 19 17 22 22 C 1.52998 * 109.63140 * 144.19504 * 21 20 19 23 23 C 1.53005 * 109.63090 * 264.43518 * 21 20 19 24 24 O 1.43369 * 108.79329 * 24.31482 * 21 20 19 25 25 H 1.08993 * 109.46947 * 59.99906 * 1 2 3 26 26 H 1.09007 * 109.47292 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47146 * 300.00203 * 1 2 3 28 28 H 0.96996 * 119.99836 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00035 * 265.00233 * 12 2 1 30 30 H 1.07997 * 119.99895 * 0.02562 * 15 13 12 31 31 H 1.08004 * 120.00062 * 359.97438 * 16 15 13 32 32 H 1.09000 * 110.98033 * 36.02154 * 19 17 16 33 33 H 1.09003 * 110.97418 * 272.23315 * 19 17 16 34 34 H 1.09004 * 109.47007 * 61.45467 * 22 21 20 35 35 H 1.09005 * 109.47164 * 181.45498 * 22 21 20 36 36 H 1.08995 * 109.47013 * 301.45542 * 22 21 20 37 37 H 1.09005 * 109.46925 * 58.55117 * 23 21 20 38 38 H 1.08996 * 109.47020 * 178.54551 * 23 21 20 39 39 H 1.08996 * 109.47136 * 298.54810 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1482 -2.2857 3.6038 10 1 3.1473 -0.1858 4.8160 11 1 1.1677 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3572 14 8 1.8574 1.1615 -2.4119 15 6 2.6378 -0.7118 -3.5581 16 6 2.7653 -0.0482 -4.7036 17 6 3.2676 -0.7587 -5.9340 18 1 3.5302 -1.7906 -5.7011 19 6 2.2120 -0.7047 -7.0666 20 8 3.0411 -0.8252 -8.2474 21 6 4.2410 -0.1001 -7.9295 22 6 5.4470 -0.8014 -8.5577 23 6 4.1390 1.3263 -8.4735 24 8 4.3941 -0.0624 -6.5045 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7084 1.1609 3.4844 29 1 2.2489 -1.6319 -1.1526 30 1 2.8946 -1.7596 -3.5095 31 1 2.5081 0.9996 -4.7522 32 1 1.6796 0.2464 -7.0589 33 1 1.5161 -1.5404 -6.9916 34 1 5.3349 -0.8156 -9.6419 35 1 6.3579 -0.2641 -8.2936 36 1 5.5073 -1.8239 -8.1852 37 1 3.2680 1.8187 -8.0409 38 1 5.0389 1.8814 -8.2087 39 1 4.0373 1.2951 -9.5582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293256275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:26 Heat of formation + Delta-G solvation = -117.645074 kcal Electronic energy + Delta-G solvation = -20270.302096 eV Core-core repulsion = 16985.352370 eV Total energy + Delta-G solvation = -3284.949726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87010 -38.90145 -35.51944 -34.93121 -34.22558 -32.43718 -32.10996 -29.25007 -28.09916 -27.63679 -25.28151 -24.28861 -21.90251 -21.40639 -20.06141 -19.35282 -17.97636 -16.99457 -16.57340 -16.05181 -15.33879 -15.28133 -14.81037 -14.48837 -14.07727 -13.89818 -13.65110 -13.26758 -12.99475 -12.88491 -12.50653 -12.43861 -12.42073 -12.12578 -11.86827 -11.79585 -11.52185 -11.10504 -10.98733 -10.77152 -10.51010 -10.32126 -10.25494 -9.93571 -9.44505 -9.17186 -9.05128 -8.57158 -7.93044 -6.13761 -4.23125 1.44146 3.15034 3.23040 3.30840 3.33621 3.66259 3.90929 4.04769 4.30455 4.38429 4.53011 4.58298 4.71634 4.83637 5.03783 5.15806 5.18805 5.27048 5.29735 5.40187 5.42785 5.47439 5.59255 5.74210 5.79918 5.89584 6.36540 6.42016 6.81449 6.86046 6.94668 7.13153 7.42812 7.54855 7.68365 7.90005 8.13182 8.63713 8.76211 9.08815 9.44499 10.92368 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043973 B = 0.003053 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.594571 B = 9167.882905 C = 9378.447591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.262 3.738 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.700 5.700 13 C 0.527 3.473 14 O -0.556 6.556 15 C -0.167 4.167 16 C -0.098 4.098 17 C 0.082 3.918 18 H 0.094 0.906 19 C 0.025 3.975 20 O -0.373 6.373 21 C 0.247 3.753 22 C -0.153 4.153 23 C -0.172 4.172 24 O -0.366 6.366 25 H 0.015 0.985 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.264 0.736 29 H 0.390 0.610 30 H 0.125 0.875 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 -4.942 -19.972 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.347 5.347 13 C 0.313 3.687 14 O -0.436 6.436 15 C -0.188 4.188 16 C -0.118 4.118 17 C 0.024 3.976 18 H 0.111 0.889 19 C -0.051 4.051 20 O -0.294 6.294 21 C 0.170 3.830 22 C -0.211 4.211 23 C -0.230 4.230 24 O -0.288 6.288 25 H 0.034 0.966 26 H 0.046 0.954 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.223 0.777 30 H 0.142 0.858 31 H 0.152 0.848 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.659 -3.993 -19.904 20.828 hybrid contribution 0.286 -0.924 1.017 1.403 sum 4.945 -4.916 -18.887 20.133 Atomic orbital electron populations 1.22077 0.98345 0.99160 1.00963 1.18786 0.91109 0.94072 0.79982 0.93263 1.21261 1.32433 1.13248 0.90308 0.91969 1.24897 0.94802 0.94958 0.99108 1.69911 1.35886 1.22477 1.23810 0.86378 0.78603 0.79521 0.82508 1.19718 1.20857 1.20857 1.46480 1.64133 1.13548 1.10514 1.18425 0.79239 0.87038 0.83985 1.90753 1.51689 1.15839 1.85362 1.22971 1.01610 1.00603 0.93621 1.23294 0.95637 1.01007 0.91888 1.22776 0.85666 0.96356 0.92767 0.88868 1.24392 0.94204 1.04220 0.82327 1.89245 1.28455 1.74644 1.37034 1.23428 0.86280 0.92222 0.81044 1.22069 0.96393 1.01432 1.01183 1.22386 1.03653 0.95175 1.01749 1.88990 1.44413 1.77238 1.18158 0.96618 0.95419 0.89082 0.92600 0.77737 0.85757 0.84761 0.90025 0.86889 0.90739 0.90371 0.91420 0.91629 0.90583 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.72 2.56 -69.08 -0.18 6.54 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.95 11.32 55.43 0.63 -24.32 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.70 -14.65 5.07 -56.11 -0.28 -14.93 16 13 C 0.53 10.63 7.73 -12.67 -0.10 10.53 16 14 O -0.56 -13.47 15.88 5.26 0.08 -13.39 16 15 C -0.17 -2.44 9.65 -37.81 -0.36 -2.80 16 16 C -0.10 -1.33 8.82 -36.13 -0.32 -1.64 16 17 C 0.08 0.91 4.04 -26.87 -0.11 0.80 16 18 H 0.09 0.91 7.88 -51.93 -0.41 0.50 16 19 C 0.02 0.24 7.35 38.17 0.28 0.52 16 20 O -0.37 -4.09 11.01 -59.04 -0.65 -4.74 16 21 C 0.25 2.59 1.47 -26.73 -0.04 2.55 16 22 C -0.15 -1.30 9.24 37.16 0.34 -0.95 16 23 C -0.17 -1.55 9.19 37.16 0.34 -1.21 16 24 O -0.37 -4.61 10.56 -59.04 -0.62 -5.23 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 6.94 8.52 -40.82 -0.35 6.60 16 30 H 0.12 1.40 7.90 -52.49 -0.41 0.98 16 31 H 0.13 2.02 7.49 -52.48 -0.39 1.63 16 32 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -31.75 330.83 -7.11 -38.86 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.04 Total: 4.96 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.19 Total: -1.80 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.34 Total: -39.25 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -1.19 Total: -23.36 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.75 -7.11 -38.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293256275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.786 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds