Wall clock time and date at job start Mon Mar 30 2020 01:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47304 * 2 1 4 4 C 1.50706 * 109.46895 * 120.00175 * 2 1 3 5 5 H 1.08001 * 119.99946 * 120.00300 * 4 2 1 6 6 C 1.37878 * 119.99697 * 299.99237 * 4 2 1 7 7 N 1.31511 * 120.00262 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99694 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47384 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46908 * 120.00321 * 8 6 4 11 11 H 1.48501 * 109.47089 * 240.00315 * 8 6 4 12 12 N 1.46505 * 109.46908 * 239.99571 * 2 1 3 13 13 C 1.34776 * 119.99901 * 85.00125 * 12 2 1 14 14 O 1.21622 * 119.99857 * 359.97438 * 13 12 2 15 15 C 1.47097 * 120.00135 * 179.97438 * 13 12 2 16 16 C 1.32996 * 119.99976 * 180.02562 * 15 13 12 17 17 C 1.50699 * 119.99849 * 180.02562 * 16 15 13 18 18 H 1.08994 * 110.62138 * 356.92279 * 17 16 15 19 19 C 1.54919 * 110.69428 * 119.99981 * 17 16 15 20 20 O 1.44785 * 101.71938 * 154.13152 * 19 17 16 21 21 C 1.43755 * 104.81505 * 323.89401 * 20 19 17 22 22 C 1.52998 * 109.63140 * 144.19504 * 21 20 19 23 23 C 1.53005 * 109.63090 * 264.43518 * 21 20 19 24 24 O 1.43369 * 108.79329 * 24.31482 * 21 20 19 25 25 H 1.08993 * 109.46947 * 59.99906 * 1 2 3 26 26 H 1.09007 * 109.47292 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47146 * 300.00203 * 1 2 3 28 28 H 0.96996 * 119.99836 * 179.97438 * 7 6 4 29 29 H 0.96996 * 120.00035 * 265.00233 * 12 2 1 30 30 H 1.07997 * 119.99895 * 0.02562 * 15 13 12 31 31 H 1.08004 * 120.00062 * 359.97438 * 16 15 13 32 32 H 1.09000 * 110.98033 * 36.02154 * 19 17 16 33 33 H 1.09003 * 110.97418 * 272.23315 * 19 17 16 34 34 H 1.09004 * 109.47007 * 61.45467 * 22 21 20 35 35 H 1.09005 * 109.47164 * 181.45498 * 22 21 20 36 36 H 1.08995 * 109.47013 * 301.45542 * 22 21 20 37 37 H 1.09005 * 109.46925 * 58.55117 * 23 21 20 38 38 H 1.08996 * 109.47020 * 178.54551 * 23 21 20 39 39 H 1.08996 * 109.47136 * 298.54810 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1482 -2.2857 3.6038 10 1 3.1473 -0.1858 4.8160 11 1 1.1677 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3572 14 8 1.8574 1.1615 -2.4119 15 6 2.6378 -0.7118 -3.5581 16 6 2.7653 -0.0482 -4.7036 17 6 3.2676 -0.7587 -5.9340 18 1 3.5302 -1.7906 -5.7011 19 6 2.2120 -0.7047 -7.0666 20 8 3.0411 -0.8252 -8.2474 21 6 4.2410 -0.1001 -7.9295 22 6 5.4470 -0.8014 -8.5577 23 6 4.1390 1.3263 -8.4735 24 8 4.3941 -0.0624 -6.5045 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7084 1.1609 3.4844 29 1 2.2489 -1.6319 -1.1526 30 1 2.8946 -1.7596 -3.5095 31 1 2.5081 0.9996 -4.7522 32 1 1.6796 0.2464 -7.0589 33 1 1.5161 -1.5404 -6.9916 34 1 5.3349 -0.8156 -9.6419 35 1 6.3579 -0.2641 -8.2936 36 1 5.5073 -1.8239 -8.1852 37 1 3.2680 1.8187 -8.0409 38 1 5.0389 1.8814 -8.2087 39 1 4.0373 1.2951 -9.5582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293256275.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:26 Heat of formation + Delta-G solvation = -139.668402 kcal Electronic energy + Delta-G solvation = -20271.257099 eV Core-core repulsion = 16985.352370 eV Total energy + Delta-G solvation = -3285.904729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.69713 -40.57011 -36.89716 -36.29041 -35.27068 -34.33965 -33.10982 -31.01663 -29.13457 -28.33508 -27.35952 -25.42563 -23.35877 -22.17419 -21.68691 -20.81782 -19.31162 -18.19924 -17.81670 -17.23124 -17.14557 -16.33276 -16.13760 -15.86072 -15.58742 -15.05753 -14.69460 -14.52734 -14.36353 -13.93395 -13.77792 -13.63809 -13.25841 -13.09732 -13.01351 -12.98287 -12.90657 -12.75243 -12.65813 -12.46521 -12.29390 -12.12352 -11.35770 -11.11587 -10.90329 -10.72293 -10.61567 -10.58921 -9.76181 -8.18832 -6.36603 0.22738 1.44498 1.45467 1.57723 2.18491 2.36785 2.45486 2.64947 2.98672 3.11888 3.45750 3.63780 3.77447 3.92675 3.94160 4.17874 4.21537 4.37018 4.52441 4.66501 4.72840 4.72956 4.74607 4.77428 4.90644 4.92147 5.07226 5.13662 5.21397 5.25569 5.29032 5.43905 5.59038 5.68201 5.90161 6.06316 6.08139 6.71394 6.93445 7.30746 7.51458 8.87928 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.043973 B = 0.003053 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.594571 B = 9167.882905 C = 9378.447591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.267 3.733 3 H -0.003 1.003 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.696 5.696 13 C 0.521 3.479 14 O -0.607 6.607 15 C -0.171 4.171 16 C -0.077 4.077 17 C 0.083 3.917 18 H 0.117 0.883 19 C 0.025 3.975 20 O -0.380 6.380 21 C 0.236 3.764 22 C -0.151 4.151 23 C -0.173 4.173 24 O -0.388 6.388 25 H 0.012 0.988 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.266 0.734 29 H 0.408 0.592 30 H 0.168 0.832 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -7.346 -20.977 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.015 0.985 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.182 1.182 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.344 5.344 13 C 0.311 3.689 14 O -0.491 6.491 15 C -0.192 4.192 16 C -0.097 4.097 17 C 0.026 3.974 18 H 0.135 0.865 19 C -0.051 4.051 20 O -0.301 6.301 21 C 0.160 3.840 22 C -0.209 4.209 23 C -0.230 4.230 24 O -0.310 6.310 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.244 0.756 30 H 0.186 0.814 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.156 0.844 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.607 -6.439 -20.938 22.612 hybrid contribution -0.006 -0.080 1.235 1.238 sum 5.601 -6.519 -19.703 21.496 Atomic orbital electron populations 1.21897 0.98097 0.99648 0.99605 1.18388 0.91304 0.91925 0.81989 0.98508 1.21590 1.32605 1.13611 0.90732 0.90656 1.25834 0.94858 0.95592 1.02445 1.70061 1.37017 1.23994 1.24607 0.85257 0.78098 0.78502 0.78230 1.18228 1.21058 1.20342 1.46206 1.64247 1.14309 1.09602 1.19289 0.77977 0.86572 0.85105 1.90728 1.53798 1.18318 1.86229 1.22784 1.03039 1.02310 0.91032 1.23374 0.93513 1.00025 0.92785 1.22860 0.85984 0.96747 0.91838 0.86505 1.24503 0.93977 1.05325 0.81343 1.89240 1.28743 1.74738 1.37409 1.23729 0.86934 0.93089 0.80206 1.22083 0.95684 1.01165 1.01923 1.22412 1.03393 0.94540 1.02664 1.88969 1.44835 1.77710 1.19523 0.96908 0.93794 0.91459 0.92517 0.75600 0.81415 0.87066 0.90248 0.84380 0.89320 0.89815 0.91497 0.92598 0.90245 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 9.26 71.98 0.67 -6.15 16 2 C 0.27 14.03 2.56 44.25 0.11 14.14 16 3 H 0.00 -0.19 7.58 -2.39 -0.02 -0.20 16 4 C -0.55 -29.03 8.73 25.60 0.22 -28.80 16 5 H 0.08 3.71 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -52.96 11.32 21.45 0.24 -52.71 16 8 Si 0.97 41.91 29.54 68.60 2.03 43.94 16 9 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 12 N -0.70 -28.95 5.07 -449.69 -2.28 -31.23 16 13 C 0.52 21.11 7.73 86.57 0.67 21.78 16 14 O -0.61 -30.56 15.88 -4.10 -0.07 -30.62 16 15 C -0.17 -4.68 9.65 23.43 0.23 -4.46 16 16 C -0.08 -1.97 8.82 24.52 0.22 -1.75 16 17 C 0.08 1.65 4.04 30.50 0.12 1.77 16 18 H 0.12 1.84 7.88 -2.39 -0.02 1.82 16 19 C 0.02 0.42 7.35 72.64 0.53 0.95 16 20 O -0.38 -7.48 11.01 -126.22 -1.39 -8.86 16 21 C 0.24 4.53 1.47 30.60 0.04 4.57 16 22 C -0.15 -2.22 9.24 71.98 0.66 -1.56 16 23 C -0.17 -2.89 9.19 71.98 0.66 -2.23 16 24 O -0.39 -9.12 10.56 -126.22 -1.33 -10.46 16 25 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 27 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 28 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.41 13.85 8.52 -92.71 -0.79 13.06 16 30 H 0.17 3.11 7.90 -2.91 -0.02 3.08 16 31 H 0.11 3.41 7.49 -2.91 -0.02 3.38 16 32 H 0.08 1.38 8.04 -2.39 -0.02 1.36 16 33 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.54 330.83 2.04 -68.50 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.25 Total: 22.06 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.59 Total: -0.61 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.04 Total: -83.94 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -2.79 Total: -49.95 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -70.54 2.04 -68.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293256275.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.172 kcal (2) G-P(sol) polarization free energy of solvation -70.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds