Wall clock time and date at job start Mon Mar 30 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47122 * 2 1 4 4 C 1.50705 * 109.46604 * 119.99969 * 2 1 3 5 5 H 1.08001 * 119.99538 * 120.00235 * 4 2 1 6 6 C 1.37877 * 120.00282 * 299.71788 * 4 2 1 7 7 N 1.31515 * 119.99836 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00061 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46856 * 90.00697 * 8 6 4 10 10 H 1.48504 * 109.46811 * 210.00085 * 8 6 4 11 11 H 1.48497 * 109.47177 * 330.00246 * 8 6 4 12 12 N 1.46498 * 109.46831 * 239.99627 * 2 1 3 13 13 C 1.34776 * 119.99976 * 85.00929 * 12 2 1 14 14 O 1.21613 * 119.99763 * 359.97438 * 13 12 2 15 15 C 1.47101 * 119.99983 * 180.02562 * 13 12 2 16 16 C 1.32995 * 119.99671 * 170.99365 * 15 13 12 17 17 C 1.50697 * 120.00473 * 351.03079 * 16 15 13 18 18 H 1.09001 * 110.61685 * 336.84838 * 17 16 15 19 19 C 1.54913 * 110.69522 * 100.10662 * 17 16 15 20 20 O 1.44791 * 101.72098 * 153.96001 * 19 17 16 21 21 C 1.43752 * 104.81347 * 323.89920 * 20 19 17 22 22 C 1.52995 * 109.63310 * 264.43212 * 21 20 19 23 23 C 1.52996 * 109.62902 * 144.19151 * 21 20 19 24 24 O 1.43366 * 108.79198 * 24.31437 * 21 20 19 25 25 H 1.08996 * 109.47122 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47056 * 300.00349 * 1 2 3 27 27 H 1.09000 * 109.47012 * 59.99871 * 1 2 3 28 28 H 0.96995 * 120.00264 * 179.97438 * 7 6 4 29 29 H 0.97004 * 119.99989 * 264.99778 * 12 2 1 30 30 H 1.08004 * 119.99951 * 350.98985 * 15 13 12 31 31 H 1.08004 * 119.99453 * 171.02890 * 16 15 13 32 32 H 1.08997 * 110.98304 * 272.07115 * 19 17 16 33 33 H 1.09000 * 110.97843 * 35.85611 * 19 17 16 34 34 H 1.09001 * 109.47589 * 179.36530 * 22 21 20 35 35 H 1.08998 * 109.47164 * 299.36978 * 22 21 20 36 36 H 1.08999 * 109.47050 * 59.36222 * 22 21 20 37 37 H 1.09002 * 109.47343 * 300.63018 * 23 21 20 38 38 H 1.09000 * 109.47543 * 60.63494 * 23 21 20 39 39 H 1.09003 * 109.46960 * 180.63746 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.7040 -0.2360 2.4828 7 7 0.9521 0.8362 2.6034 8 14 2.3271 -1.1163 4.0080 9 1 3.6382 -0.5452 4.4081 10 1 1.3522 -0.9399 5.1143 11 1 2.4861 -2.5632 3.7143 12 7 2.0183 -0.6907 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8577 1.1615 -2.4118 15 6 2.6369 -0.7120 -3.5583 16 6 2.5958 -0.1040 -4.7404 17 6 1.8678 1.2071 -4.8886 18 1 1.1169 1.3196 -4.1066 19 6 2.8653 2.3923 -4.8695 20 8 2.1442 3.3957 -5.6242 21 6 1.4475 2.6590 -6.6432 22 6 2.2693 2.6635 -7.9337 23 6 0.0848 3.3042 -6.9031 24 8 1.2638 1.3100 -6.1938 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7207 1.1698 3.4843 29 1 2.2490 -1.6319 -1.1525 30 1 3.0299 -1.7150 -3.4802 31 1 3.0842 -0.5500 -5.5942 32 1 3.0510 2.7296 -3.8498 33 1 3.7979 2.1255 -5.3666 34 1 1.7441 2.0948 -8.7010 35 1 2.4074 3.6901 -8.2729 36 1 3.2422 2.2089 -7.7465 37 1 -0.4981 3.3057 -5.9820 38 1 0.2274 4.3295 -7.2445 39 1 -0.4458 2.7371 -7.6678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293256282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:31 Heat of formation + Delta-G solvation = -109.724151 kcal Electronic energy + Delta-G solvation = -20998.549896 eV Core-core repulsion = 17713.943647 eV Total energy + Delta-G solvation = -3284.606249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59038 -39.02994 -35.35005 -34.84095 -33.79451 -32.48945 -31.98134 -29.19133 -27.78365 -27.36056 -25.28689 -23.98111 -22.15973 -21.10682 -20.13091 -19.28916 -17.47547 -17.10037 -16.27412 -15.79677 -15.37462 -15.01396 -14.55295 -14.43641 -13.90629 -13.75405 -13.39642 -13.05617 -12.88692 -12.60901 -12.44183 -12.34781 -12.24628 -12.14421 -11.79237 -11.71765 -11.30137 -11.09862 -11.01036 -10.80674 -10.34096 -10.27180 -10.10894 -9.69584 -9.34369 -9.08999 -8.89745 -8.55303 -7.93365 -6.14937 -4.24459 1.49385 3.22953 3.29748 3.31446 3.44599 3.82787 4.04480 4.08269 4.36833 4.68178 4.77551 4.89312 5.00739 5.14225 5.17672 5.29130 5.43366 5.48905 5.52711 5.60086 5.63742 5.77538 5.88962 5.99984 6.09103 6.16568 6.28509 6.55206 6.80680 6.93927 7.11675 7.20808 7.40751 7.52487 7.66526 7.87982 8.11568 8.60669 8.73518 9.04400 9.43072 10.91103 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040570 B = 0.003766 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.000099 B = 7433.423278 C = 7679.959863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.262 3.738 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.699 5.699 13 C 0.523 3.477 14 O -0.553 6.553 15 C -0.185 4.185 16 C -0.087 4.087 17 C 0.068 3.932 18 H 0.133 0.867 19 C 0.037 3.963 20 O -0.372 6.372 21 C 0.248 3.752 22 C -0.169 4.169 23 C -0.154 4.154 24 O -0.382 6.382 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.390 0.610 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -0.562 -16.992 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.345 5.345 13 C 0.310 3.690 14 O -0.435 6.435 15 C -0.206 4.206 16 C -0.107 4.107 17 C 0.012 3.988 18 H 0.150 0.850 19 C -0.039 4.039 20 O -0.293 6.293 21 C 0.171 3.829 22 C -0.227 4.227 23 C -0.211 4.211 24 O -0.304 6.304 25 H 0.045 0.955 26 H 0.108 0.892 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.223 0.777 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.272 0.464 -16.903 17.061 hybrid contribution 0.633 -1.161 0.918 1.609 sum 2.905 -0.697 -15.986 16.262 Atomic orbital electron populations 1.22069 0.98340 0.99151 1.00931 1.18784 0.91097 0.94055 0.79977 0.93170 1.21214 1.32634 1.13209 0.90339 0.92068 1.24889 0.94783 0.94938 0.99076 1.69901 1.35940 1.22228 1.23940 0.86443 0.78617 0.79833 0.82174 1.20549 1.21051 1.19843 1.46499 1.63860 1.13544 1.10559 1.18587 0.79064 0.87128 0.84174 1.90645 1.52233 1.16025 1.84618 1.22970 1.03577 1.00414 0.93618 1.23348 0.94942 0.95082 0.97357 1.23400 0.96503 0.93222 0.85647 0.84987 1.24240 0.94289 0.86859 0.98484 1.89246 1.63863 1.30695 1.45497 1.23306 0.92430 0.78655 0.88521 1.22374 1.00522 1.02911 0.96889 1.22057 0.94984 1.00868 1.03197 1.88857 1.78954 1.28550 1.34074 0.95456 0.89163 0.96602 0.92536 0.77707 0.85035 0.85455 0.86115 0.91571 0.90957 0.90872 0.92033 0.91208 0.90951 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.55 2.56 -69.08 -0.18 6.38 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -14.00 8.72 -34.44 -0.30 -14.30 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.67 11.34 55.43 0.63 -24.04 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.70 -14.10 5.07 -56.12 -0.28 -14.38 16 13 C 0.52 9.94 7.53 -12.67 -0.10 9.84 16 14 O -0.55 -12.09 11.97 5.27 0.06 -12.03 16 15 C -0.18 -2.60 10.02 -37.81 -0.38 -2.98 16 16 C -0.09 -1.16 9.31 -36.13 -0.34 -1.50 16 17 C 0.07 1.06 3.03 -26.88 -0.08 0.98 16 18 H 0.13 2.49 5.52 -51.93 -0.29 2.20 16 19 C 0.04 0.56 7.13 38.17 0.27 0.83 16 20 O -0.37 -5.77 11.01 -59.04 -0.65 -6.42 16 21 C 0.25 3.34 1.47 -26.74 -0.04 3.30 16 22 C -0.17 -1.77 9.19 37.16 0.34 -1.43 16 23 C -0.15 -1.79 9.24 37.16 0.34 -1.45 16 24 O -0.38 -5.76 10.56 -59.04 -0.62 -6.38 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 2.42 6.09 -51.93 -0.32 2.10 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.39 6.78 8.52 -40.82 -0.35 6.43 16 30 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 32 H 0.12 1.96 7.31 -51.93 -0.38 1.58 16 33 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 323.90 15.07 4.88 4.88 Total: -1.00 -29.91 323.90 -7.12 -37.03 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.91 Total: 7.83 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -0.20 Total: -1.90 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.34 Total: -38.42 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -1.21 Total: -24.84 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.91 -7.12 -37.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293256282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.693 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds