Wall clock time and date at job start Mon Mar 30 2020 01:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47122 * 2 1 4 4 C 1.50705 * 109.46604 * 119.99969 * 2 1 3 5 5 H 1.08001 * 119.99538 * 120.00235 * 4 2 1 6 6 C 1.37877 * 120.00282 * 299.71788 * 4 2 1 7 7 N 1.31515 * 119.99836 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00061 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46856 * 90.00697 * 8 6 4 10 10 H 1.48504 * 109.46811 * 210.00085 * 8 6 4 11 11 H 1.48497 * 109.47177 * 330.00246 * 8 6 4 12 12 N 1.46498 * 109.46831 * 239.99627 * 2 1 3 13 13 C 1.34776 * 119.99976 * 85.00929 * 12 2 1 14 14 O 1.21613 * 119.99763 * 359.97438 * 13 12 2 15 15 C 1.47101 * 119.99983 * 180.02562 * 13 12 2 16 16 C 1.32995 * 119.99671 * 170.99365 * 15 13 12 17 17 C 1.50697 * 120.00473 * 351.03079 * 16 15 13 18 18 H 1.09001 * 110.61685 * 336.84838 * 17 16 15 19 19 C 1.54913 * 110.69522 * 100.10662 * 17 16 15 20 20 O 1.44791 * 101.72098 * 153.96001 * 19 17 16 21 21 C 1.43752 * 104.81347 * 323.89920 * 20 19 17 22 22 C 1.52995 * 109.63310 * 264.43212 * 21 20 19 23 23 C 1.52996 * 109.62902 * 144.19151 * 21 20 19 24 24 O 1.43366 * 108.79198 * 24.31437 * 21 20 19 25 25 H 1.08996 * 109.47122 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47056 * 300.00349 * 1 2 3 27 27 H 1.09000 * 109.47012 * 59.99871 * 1 2 3 28 28 H 0.96995 * 120.00264 * 179.97438 * 7 6 4 29 29 H 0.97004 * 119.99989 * 264.99778 * 12 2 1 30 30 H 1.08004 * 119.99951 * 350.98985 * 15 13 12 31 31 H 1.08004 * 119.99453 * 171.02890 * 16 15 13 32 32 H 1.08997 * 110.98304 * 272.07115 * 19 17 16 33 33 H 1.09000 * 110.97843 * 35.85611 * 19 17 16 34 34 H 1.09001 * 109.47589 * 179.36530 * 22 21 20 35 35 H 1.08998 * 109.47164 * 299.36978 * 22 21 20 36 36 H 1.08999 * 109.47050 * 59.36222 * 22 21 20 37 37 H 1.09002 * 109.47343 * 300.63018 * 23 21 20 38 38 H 1.09000 * 109.47543 * 60.63494 * 23 21 20 39 39 H 1.09003 * 109.46960 * 180.63746 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.7040 -0.2360 2.4828 7 7 0.9521 0.8362 2.6034 8 14 2.3271 -1.1163 4.0080 9 1 3.6382 -0.5452 4.4081 10 1 1.3522 -0.9399 5.1143 11 1 2.4861 -2.5632 3.7143 12 7 2.0183 -0.6907 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8577 1.1615 -2.4118 15 6 2.6369 -0.7120 -3.5583 16 6 2.5958 -0.1040 -4.7404 17 6 1.8678 1.2071 -4.8886 18 1 1.1169 1.3196 -4.1066 19 6 2.8653 2.3923 -4.8695 20 8 2.1442 3.3957 -5.6242 21 6 1.4475 2.6590 -6.6432 22 6 2.2693 2.6635 -7.9337 23 6 0.0848 3.3042 -6.9031 24 8 1.2638 1.3100 -6.1938 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7207 1.1698 3.4843 29 1 2.2490 -1.6319 -1.1525 30 1 3.0299 -1.7150 -3.4802 31 1 3.0842 -0.5500 -5.5942 32 1 3.0510 2.7296 -3.8498 33 1 3.7979 2.1255 -5.3666 34 1 1.7441 2.0948 -8.7010 35 1 2.4074 3.6901 -8.2729 36 1 3.2422 2.2089 -7.7465 37 1 -0.4981 3.3057 -5.9820 38 1 0.2274 4.3295 -7.2445 39 1 -0.4458 2.7371 -7.6678 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293256282.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:30 Heat of formation + Delta-G solvation = -130.225801 kcal Electronic energy + Delta-G solvation = -20999.438914 eV Core-core repulsion = 17713.943647 eV Total energy + Delta-G solvation = -3285.495267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.74408 -40.54722 -36.98618 -36.14699 -35.01791 -34.33789 -33.09778 -30.99333 -28.93968 -28.31713 -27.34592 -25.30108 -23.63433 -22.13936 -21.84321 -20.80020 -18.72420 -18.58073 -17.71578 -17.24065 -17.04383 -16.32519 -16.08129 -15.64559 -15.40107 -15.11893 -14.49982 -14.48140 -14.29324 -14.05678 -13.69508 -13.65177 -13.42398 -13.14886 -13.08209 -12.97654 -12.88529 -12.76864 -12.67748 -12.38447 -12.27497 -12.12383 -11.38175 -11.11851 -10.82489 -10.63018 -10.50937 -10.29482 -9.65737 -8.17893 -6.35393 0.32449 1.45307 1.45522 1.56417 2.21988 2.36391 2.52733 2.70390 2.97809 3.12959 3.56886 3.76599 3.86688 3.97424 4.00324 4.09324 4.41051 4.46958 4.58249 4.66215 4.72698 4.75398 4.76935 4.83765 4.91328 4.99704 5.08405 5.12072 5.15591 5.23948 5.36755 5.50664 5.62599 5.69438 5.91625 6.09272 6.10780 6.72847 6.97581 7.32358 7.55300 8.88479 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040570 B = 0.003766 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.000099 B = 7433.423278 C = 7679.959863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H 0.001 0.999 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.698 5.698 13 C 0.514 3.486 14 O -0.589 6.589 15 C -0.185 4.185 16 C -0.068 4.068 17 C 0.064 3.936 18 H 0.091 0.909 19 C 0.040 3.960 20 O -0.393 6.393 21 C 0.232 3.768 22 C -0.162 4.162 23 C -0.155 4.155 24 O -0.388 6.388 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.010 0.990 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.176 0.824 31 H 0.171 0.829 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.065 -2.621 -18.722 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.019 0.981 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.183 1.183 12 N -0.346 5.346 13 C 0.304 3.696 14 O -0.474 6.474 15 C -0.206 4.206 16 C -0.087 4.087 17 C 0.007 3.993 18 H 0.109 0.891 19 C -0.036 4.036 20 O -0.315 6.315 21 C 0.156 3.844 22 C -0.220 4.220 23 C -0.212 4.212 24 O -0.310 6.310 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.029 0.971 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.193 0.807 31 H 0.188 0.812 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.658 -1.626 -18.665 19.090 hybrid contribution 0.144 -0.406 1.367 1.434 sum 3.801 -2.032 -17.298 17.827 Atomic orbital electron populations 1.21887 0.98473 0.99358 0.99422 1.18336 0.90962 0.92049 0.82042 0.98141 1.21565 1.32629 1.13524 0.90800 0.90731 1.25813 0.94881 0.95573 1.02390 1.70057 1.37198 1.23801 1.24595 0.85339 0.77740 0.79239 0.77984 1.20346 1.21087 1.18276 1.46222 1.64442 1.14222 1.09728 1.19482 0.78076 0.86917 0.85170 1.90658 1.53408 1.17997 1.85301 1.22944 1.04494 1.01987 0.91141 1.23616 0.93426 0.93287 0.98410 1.23165 0.95940 0.95120 0.85039 0.89120 1.24184 0.95272 0.86468 0.97677 1.89218 1.64327 1.31548 1.46364 1.23796 0.93592 0.77915 0.89141 1.22337 1.00219 1.04132 0.95270 1.22119 0.94207 1.02159 1.02729 1.88833 1.79303 1.29521 1.33361 0.94166 0.91661 0.97051 0.92593 0.75815 0.80712 0.81150 0.88634 0.88670 0.89344 0.89632 0.91643 0.93439 0.89384 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.76 9.26 71.98 0.67 -6.10 16 2 C 0.27 13.89 2.56 44.25 0.11 14.01 16 3 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 4 C -0.55 -28.71 8.72 25.60 0.22 -28.49 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -52.78 11.34 21.45 0.24 -52.54 16 8 Si 0.97 41.75 29.54 68.60 2.03 43.77 16 9 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 12 N -0.70 -28.22 5.07 -449.70 -2.28 -30.49 16 13 C 0.51 19.61 7.53 86.57 0.65 20.26 16 14 O -0.59 -27.09 11.97 -4.07 -0.05 -27.14 16 15 C -0.19 -4.75 10.02 23.43 0.23 -4.52 16 16 C -0.07 -1.62 9.31 24.52 0.23 -1.39 16 17 C 0.06 1.97 3.03 30.50 0.09 2.06 16 18 H 0.09 3.60 5.52 -2.39 -0.01 3.59 16 19 C 0.04 1.19 7.13 72.64 0.52 1.71 16 20 O -0.39 -12.21 11.01 -126.22 -1.39 -13.60 16 21 C 0.23 5.96 1.47 30.59 0.04 6.01 16 22 C -0.16 -2.94 9.19 71.98 0.66 -2.28 16 23 C -0.15 -3.49 9.24 71.98 0.66 -2.83 16 24 O -0.39 -11.21 10.56 -126.22 -1.33 -12.54 16 25 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.06 3.65 6.09 -2.39 -0.01 3.64 16 27 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.41 13.56 8.52 -92.71 -0.79 12.77 16 30 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.10 3.29 7.31 -2.39 -0.02 3.27 16 33 H 0.10 2.23 8.04 -2.39 -0.02 2.21 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.10 323.90 2.02 -66.08 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.25 Total: 26.84 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 4.55 Total: -0.38 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -2.03 Total: -83.03 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -2.77 Total: -53.28 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -68.10 2.02 -66.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293256282.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.150 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds