Wall clock time and date at job start Mon Mar 30 2020 01:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.49478 * 2 1 4 4 C 1.53094 * 109.48107 * 239.96955 * 2 1 3 5 5 C 1.53180 * 109.16458 * 182.41248 * 4 2 1 6 6 H 1.09003 * 109.54137 * 297.02097 * 5 4 2 7 7 C 1.50697 * 109.54037 * 176.85173 * 5 4 2 8 8 O 1.21284 * 120.00498 * 359.97438 * 7 5 4 9 9 N 1.34783 * 119.99791 * 180.02562 * 7 5 4 10 10 C 1.47579 * 134.49277 * 179.97438 * 9 7 5 11 11 C 1.53950 * 86.11702 * 155.35219 * 10 9 7 12 12 O 1.42898 * 113.74209 * 269.15554 * 11 10 9 13 13 C 1.50695 * 113.73904 * 137.95109 * 11 10 9 14 14 H 1.08002 * 120.00005 * 17.19385 * 13 11 10 15 15 C 1.37882 * 119.99717 * 197.19268 * 13 11 10 16 16 N 1.31517 * 119.99594 * 194.35793 * 15 13 11 17 17 Si 1.86793 * 120.00089 * 14.35797 * 15 13 11 18 18 H 1.48507 * 109.47119 * 180.02562 * 17 15 13 19 19 H 1.48504 * 109.47246 * 299.99960 * 17 15 13 20 20 H 1.48497 * 109.47190 * 59.99857 * 17 15 13 21 21 C 1.47809 * 134.45575 * 359.85897 * 9 7 5 22 22 C 1.53171 * 109.03570 * 56.98058 * 5 4 2 23 23 C 1.53085 * 109.16546 * 303.01735 * 22 5 4 24 24 O 1.42905 * 109.47842 * 120.03184 * 2 1 3 25 25 H 1.09002 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47278 * 300.02778 * 1 2 3 27 27 H 1.09000 * 109.47115 * 60.02448 * 1 2 3 28 28 H 1.08996 * 109.52183 * 62.50226 * 4 2 1 29 29 H 1.09003 * 109.57330 * 302.35133 * 4 2 1 30 30 H 1.09006 * 113.76705 * 41.05021 * 10 9 7 31 31 H 1.08994 * 113.77186 * 269.65422 * 10 9 7 32 32 H 0.96695 * 114.00276 * 174.15046 * 12 11 10 33 33 H 0.97001 * 119.99943 * 354.86478 * 16 15 13 34 34 H 1.08998 * 113.76817 * 90.38175 * 21 9 7 35 35 H 1.09003 * 113.83162 * 318.92017 * 21 9 7 36 36 H 1.08997 * 109.52800 * 62.92890 * 22 5 4 37 37 H 1.09008 * 109.52203 * 183.11552 * 22 5 4 38 38 H 1.08999 * 109.48420 * 297.62993 * 23 22 5 39 39 H 1.09006 * 109.49404 * 177.60051 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5711 -0.7710 -1.2121 6 1 3.9690 0.2433 -1.2424 7 6 4.0798 -1.5477 -2.3991 8 8 3.2968 -2.0173 -3.1974 9 7 5.4051 -1.7213 -2.5730 10 6 6.2348 -2.4031 -3.5852 11 6 7.3551 -1.4329 -3.1684 12 8 7.3829 -0.2246 -3.9307 13 6 8.7088 -2.0843 -3.0501 14 1 8.8869 -3.0465 -3.5072 15 6 9.7201 -1.4519 -2.3584 16 7 10.9622 -1.8650 -2.4859 17 14 9.3259 -0.0083 -1.2403 18 1 10.5779 0.4915 -0.6173 19 1 8.7017 1.0786 -2.0367 20 1 8.3850 -0.4471 -0.1786 21 6 6.6106 -1.3030 -1.8270 22 6 4.0175 -1.4602 0.0809 23 6 3.4307 -0.7094 1.2790 24 8 2.0065 -0.6743 1.1664 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5143 0.8898 27 1 -0.3633 0.5135 -0.8902 28 1 1.7148 -0.1844 -2.1398 29 1 1.6442 -1.7375 -1.2721 30 1 5.8867 -2.2590 -4.6081 31 1 6.4466 -3.4460 -3.3497 32 1 8.0261 0.4248 -3.6152 33 1 11.1580 -2.6595 -3.0067 34 1 6.9329 -2.0223 -1.0742 35 1 6.5621 -0.2820 -1.4485 36 1 3.6612 -2.4903 0.0865 37 1 5.1058 -1.4500 0.1421 38 1 3.8192 0.3088 1.2958 39 1 3.7099 -1.2202 2.2006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321088240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:43 Heat of formation + Delta-G solvation = -126.299830 kcal Electronic energy + Delta-G solvation = -21702.461072 eV Core-core repulsion = 18417.136048 eV Total energy + Delta-G solvation = -3285.325024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72650 -40.36983 -39.03322 -36.04052 -34.75272 -34.65416 -33.72776 -30.59799 -28.86191 -27.70044 -26.87888 -25.21272 -23.62939 -21.96028 -21.25262 -20.14686 -19.87868 -18.19166 -17.67646 -17.28919 -16.98587 -16.85959 -16.19478 -16.01164 -15.51293 -15.27804 -15.00236 -14.79509 -14.55141 -14.15542 -13.85054 -13.73220 -13.54170 -13.17517 -12.95782 -12.83119 -12.53148 -12.36779 -12.17039 -12.10400 -11.80610 -11.70704 -11.49516 -11.28641 -11.02835 -10.89618 -10.52827 -10.26510 -9.72824 -8.83816 -6.60581 1.41995 1.50073 1.51230 1.63448 1.84011 2.44228 2.83771 2.90019 3.17212 3.46519 3.59068 3.70847 3.72670 3.91132 4.09780 4.19420 4.27612 4.30700 4.38432 4.43611 4.49628 4.54599 4.59414 4.69136 4.72617 4.79077 4.83506 4.97737 5.00908 5.01546 5.05842 5.23050 5.31976 5.61064 5.89920 6.28944 6.38821 6.69726 6.93826 7.03120 7.26670 8.51330 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027520 B = 0.005576 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.184471 B = 5020.448338 C = 5608.209302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.076 0.924 4 C -0.123 4.123 5 C -0.100 4.100 6 H 0.114 0.886 7 C 0.529 3.471 8 O -0.594 6.594 9 N -0.631 5.631 10 C 0.120 3.880 11 C 0.191 3.809 12 O -0.574 6.574 13 C -0.625 4.625 14 H 0.029 0.971 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 1.068 2.932 18 H -0.289 1.289 19 H -0.245 1.245 20 H -0.228 1.228 21 C 0.072 3.928 22 C -0.147 4.147 23 C 0.066 3.934 24 O -0.395 6.395 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.375 0.625 33 H 0.257 0.743 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.873 7.285 10.156 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.094 0.906 4 C -0.161 4.161 5 C -0.120 4.120 6 H 0.132 0.868 7 C 0.321 3.679 8 O -0.476 6.476 9 N -0.364 5.364 10 C -0.002 4.002 11 C 0.150 3.850 12 O -0.383 6.383 13 C -0.663 4.663 14 H 0.048 0.952 15 C -0.208 4.208 16 N -0.555 5.555 17 Si 0.886 3.114 18 H -0.215 1.215 19 H -0.169 1.169 20 H -0.152 1.152 21 C -0.050 4.050 22 C -0.185 4.185 23 C -0.011 4.011 24 O -0.315 6.315 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.225 0.775 33 H 0.066 0.934 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.400 7.790 10.523 20.214 hybrid contribution 0.652 -1.716 -1.724 2.518 sum -14.748 6.074 8.799 18.216 Atomic orbital electron populations 1.21770 0.91793 1.02875 1.03514 1.22222 0.96156 0.95200 0.83433 0.90600 1.22026 0.92419 1.02092 0.99603 1.21372 0.97826 1.00579 0.92273 0.86798 1.20984 0.79792 0.80074 0.87057 1.90623 1.55529 1.53382 1.48041 1.50153 1.04076 1.53807 1.28353 1.23177 0.86886 0.97225 0.92958 1.20367 0.92501 0.83878 0.88237 1.86361 1.63828 1.28768 1.59347 1.22297 0.97982 1.07278 1.38709 0.95249 1.27402 0.91540 1.04500 0.97374 1.70958 1.20157 1.23617 1.40741 0.83922 0.77386 0.73262 0.76782 1.21515 1.16931 1.15156 1.24555 0.81110 1.01394 0.97917 1.22240 1.02429 1.00205 0.93593 1.22691 0.80116 1.00638 0.97609 1.87916 1.21918 1.78391 1.43266 0.92630 0.90777 0.89734 0.90569 0.92365 0.91987 0.88913 0.77466 0.93377 0.87774 0.88671 0.91980 0.89411 0.90949 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.56 71.98 0.69 -1.61 16 2 C 0.09 1.70 3.26 30.62 0.10 1.80 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.12 -3.06 4.02 30.69 0.12 -2.93 16 5 C -0.10 -2.65 2.44 -11.42 -0.03 -2.67 16 6 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 7 C 0.53 19.41 7.39 87.65 0.65 20.05 16 8 O -0.59 -26.03 16.69 -3.04 -0.05 -26.08 16 9 N -0.63 -23.84 3.57 -839.55 -3.00 -26.84 16 10 C 0.12 5.07 8.23 86.49 0.71 5.78 16 11 C 0.19 8.31 1.07 -10.87 -0.01 8.30 16 12 O -0.57 -25.04 13.47 -148.98 -2.01 -27.05 16 13 C -0.62 -32.16 9.04 25.60 0.23 -31.93 16 14 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 15 C -0.01 -0.38 5.44 84.66 0.46 0.08 16 16 N -0.92 -52.54 13.70 21.45 0.29 -52.25 16 17 Si 1.07 39.99 24.56 68.60 1.68 41.67 16 18 H -0.29 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.24 -7.77 5.81 99.48 0.58 -7.19 16 20 H -0.23 -6.95 6.48 99.48 0.64 -6.30 16 21 C 0.07 2.56 3.72 86.45 0.32 2.88 16 22 C -0.15 -3.36 5.26 30.68 0.16 -3.20 16 23 C 0.07 1.19 6.84 72.01 0.49 1.68 16 24 O -0.40 -8.62 10.41 -148.98 -1.55 -10.17 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.68 8.02 -2.39 -0.02 1.66 16 30 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 31 H 0.09 3.80 8.09 -2.39 -0.02 3.78 16 32 H 0.37 14.62 6.07 -74.06 -0.45 14.17 16 33 H 0.26 15.06 8.73 -92.71 -0.81 14.25 16 34 H 0.10 3.52 7.85 -2.39 -0.02 3.50 16 35 H 0.10 2.83 6.87 -2.39 -0.02 2.81 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.93 6.32 -2.38 -0.02 1.91 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -66.84 309.48 -0.37 -67.20 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.36 Total: 35.29 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 3.90 Total: -1.77 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -2.71 Total: -79.09 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -3.61 Total: -63.30 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.68 Total: 41.67 kcal Total: -66.84 -0.37 -67.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321088240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.095 kcal (2) G-P(sol) polarization free energy of solvation -66.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds