Wall clock time and date at job start Mon Mar 30 2020 01:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.48219 * 2 1 4 4 C 1.53093 * 109.47794 * 120.03818 * 2 1 3 5 5 C 1.53180 * 109.16207 * 177.58907 * 4 2 1 6 6 H 1.08996 * 109.54301 * 183.15160 * 5 4 2 7 7 C 1.50702 * 109.54504 * 62.96901 * 5 4 2 8 8 O 1.21282 * 119.99757 * 0.02562 * 7 5 4 9 9 N 1.34768 * 119.99956 * 180.02562 * 7 5 4 10 10 C 1.47066 * 136.05785 * 359.62854 * 9 7 5 11 11 C 1.53242 * 88.08520 * 207.20601 * 10 9 7 12 12 O 1.42897 * 114.01487 * 87.71630 * 11 10 9 13 13 C 1.50695 * 114.50707 * 220.45997 * 11 10 9 14 14 H 1.07996 * 120.00191 * 93.84961 * 13 11 10 15 15 C 1.37880 * 119.99977 * 273.84236 * 13 11 10 16 16 N 1.31509 * 119.99892 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99874 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47330 * 60.00386 * 17 15 13 19 19 H 1.48502 * 109.47179 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47191 * 300.00252 * 17 15 13 21 21 C 1.47071 * 136.05524 * 180.02562 * 9 7 5 22 22 C 1.53180 * 109.03380 * 303.01706 * 5 4 2 23 23 C 1.53096 * 109.16300 * 56.98167 * 22 5 4 24 24 O 1.42905 * 109.47459 * 239.97526 * 2 1 3 25 25 H 1.08997 * 109.47519 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46984 * 300.02356 * 1 2 3 27 27 H 1.08998 * 109.46773 * 60.01722 * 1 2 3 28 28 H 1.09000 * 109.52171 * 297.49519 * 4 2 1 29 29 H 1.08994 * 109.52452 * 57.68283 * 4 2 1 30 30 H 1.09001 * 113.47469 * 321.94067 * 10 9 7 31 31 H 1.09008 * 113.46480 * 92.38220 * 10 9 7 32 32 H 0.96701 * 113.99882 * 86.39336 * 12 11 10 33 33 H 0.97004 * 119.99652 * 179.97438 * 16 15 13 34 34 H 1.09007 * 113.46018 * 267.61777 * 21 9 7 35 35 H 1.08993 * 113.47040 * 37.99841 * 21 9 7 36 36 H 1.09001 * 109.52400 * 297.07495 * 22 5 4 37 37 H 1.09004 * 109.52264 * 176.88591 * 22 5 4 38 38 H 1.09005 * 109.47867 * 182.40583 * 23 22 5 39 39 H 1.09001 * 109.48124 * 62.37304 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7225 1.2495 5 6 3.5711 -0.7712 1.2121 6 1 3.9391 -1.3331 2.0704 7 6 4.1213 0.6312 1.2539 8 8 3.3651 1.5778 1.3088 9 7 5.4535 0.8333 1.2304 10 6 6.6527 -0.0163 1.1754 11 6 7.4147 1.1014 1.8955 12 8 7.3419 1.0301 3.3208 13 6 8.8115 1.3373 1.3814 14 1 8.9892 2.0883 0.6260 15 6 9.8627 0.5944 1.8756 16 7 9.6462 -0.3204 2.7953 17 14 11.5942 0.8874 1.2389 18 1 11.9898 2.2928 1.5093 19 1 12.5362 -0.0332 1.9247 20 1 11.6329 0.6349 -0.2240 21 6 6.3481 2.0004 1.2554 22 6 4.0175 -1.4603 -0.0811 23 6 3.4306 -0.7093 -1.2792 24 8 2.0065 -0.6741 -1.1665 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3633 0.5136 -0.8901 28 1 1.7148 -0.1846 2.1398 29 1 1.6442 -1.7376 1.2707 30 1 6.5653 -0.9293 1.7644 31 1 7.0080 -0.2005 0.1615 32 1 8.0152 0.4630 3.7211 33 1 10.3857 -0.8433 3.1427 34 1 6.6214 2.3591 0.2629 35 1 6.0016 2.7990 1.9113 36 1 3.6612 -2.4904 -0.0867 37 1 5.1058 -1.4500 -0.1423 38 1 3.7099 -1.2202 -2.2007 39 1 3.8193 0.3090 -1.2958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321088243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:47 Heat of formation + Delta-G solvation = -102.738702 kcal Electronic energy + Delta-G solvation = -21861.227105 eV Core-core repulsion = 18576.923768 eV Total energy + Delta-G solvation = -3284.303337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41954 -38.83962 -37.09792 -34.12216 -33.46814 -32.63277 -32.23482 -28.77473 -27.77575 -25.71867 -25.20153 -23.95911 -22.45711 -21.20740 -19.66872 -18.09915 -17.35070 -16.30853 -16.14437 -15.92182 -15.46485 -15.06616 -14.94950 -14.36543 -14.05765 -13.74179 -13.44879 -12.90501 -12.82578 -12.43395 -12.32315 -12.22481 -11.89761 -11.80448 -11.69662 -11.59690 -11.08532 -11.06136 -10.97955 -10.60722 -10.53761 -10.33419 -10.26140 -9.64945 -9.37074 -9.00368 -8.79342 -8.41528 -7.89519 -6.44948 -4.55592 3.12578 3.13065 3.19130 3.21313 3.51524 3.90436 4.14203 4.71546 4.76381 4.83911 4.92183 5.02992 5.18894 5.34689 5.46655 5.53542 5.61123 5.69406 5.75131 5.78418 5.85057 5.93131 6.01551 6.06813 6.07931 6.18083 6.23162 6.32646 6.37052 6.46075 6.59409 6.64384 7.05827 7.38899 7.58227 7.75788 8.45568 8.49557 8.71922 9.16095 9.44083 10.61710 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037766 B = 0.004769 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.222767 B = 5869.752130 C = 6069.558275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.074 3.926 3 H 0.085 0.915 4 C -0.125 4.125 5 C -0.106 4.106 6 H 0.097 0.903 7 C 0.539 3.461 8 O -0.562 6.562 9 N -0.632 5.632 10 C 0.072 3.928 11 C 0.240 3.760 12 O -0.572 6.572 13 C -0.535 4.535 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.899 5.899 17 Si 0.909 3.091 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.105 3.895 22 C -0.147 4.147 23 C 0.063 3.937 24 O -0.385 6.385 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.394 0.606 33 H 0.275 0.725 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.970 -3.891 -4.685 10.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 H 0.103 0.897 4 C -0.163 4.163 5 C -0.127 4.127 6 H 0.115 0.885 7 C 0.328 3.672 8 O -0.443 6.443 9 N -0.364 5.364 10 C -0.051 4.051 11 C 0.198 3.802 12 O -0.385 6.385 13 C -0.573 4.573 14 H 0.090 0.910 15 C -0.130 4.130 16 N -0.539 5.539 17 Si 0.736 3.264 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.017 4.017 22 C -0.185 4.185 23 C -0.014 4.014 24 O -0.305 6.305 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.250 0.750 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.113 -3.262 -4.749 11.639 hybrid contribution 1.707 -0.392 0.037 1.752 sum -8.405 -3.654 -4.712 10.306 Atomic orbital electron populations 1.21725 0.93573 1.02202 1.02211 1.22377 0.94579 0.97163 0.84236 0.89699 1.21974 0.93237 1.01326 0.99735 1.21297 0.96809 0.94458 1.00157 0.88455 1.19966 0.80270 0.90739 0.76175 1.90578 1.56729 1.44333 1.52672 1.49716 1.03383 1.13183 1.70146 1.24156 0.81730 0.97993 1.01186 1.19489 0.91335 0.89051 0.80297 1.86047 1.60252 1.73112 1.19123 1.21394 0.91178 1.21279 1.23464 0.90980 1.25073 1.00049 0.93669 0.94171 1.69252 1.33290 1.22778 1.28575 0.86363 0.82405 0.78503 0.79125 1.19799 1.20955 1.19845 1.23332 0.87352 0.90951 1.00063 1.22194 1.02161 1.00131 0.94015 1.22510 0.81291 0.99670 0.97949 1.87844 1.20684 1.78317 1.43608 0.92339 0.91197 0.92184 0.90328 0.90910 0.91760 0.90108 0.74965 0.91483 0.89779 0.91603 0.90241 0.89874 0.88811 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.56 37.16 0.36 -1.32 16 2 C 0.07 1.10 2.98 -26.68 -0.08 1.02 16 3 H 0.09 1.50 5.81 -51.93 -0.30 1.20 16 4 C -0.12 -1.79 4.56 -26.59 -0.12 -1.91 16 5 C -0.11 -1.67 2.91 -91.58 -0.27 -1.94 16 6 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 7 C 0.54 10.62 6.08 -10.99 -0.07 10.55 16 8 O -0.56 -12.39 14.62 5.56 0.08 -12.31 16 9 N -0.63 -12.97 3.64 -185.35 -0.67 -13.65 16 10 C 0.07 1.49 6.16 -8.63 -0.05 1.44 16 11 C 0.24 5.63 1.57 -91.40 -0.14 5.49 16 12 O -0.57 -14.58 13.53 -35.23 -0.48 -15.06 16 13 C -0.54 -13.08 8.70 -34.44 -0.30 -13.38 16 14 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 16 N -0.90 -22.24 11.01 55.43 0.61 -21.63 16 17 Si 0.91 18.98 29.54 -169.99 -5.02 13.96 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 21 C 0.11 2.26 8.03 -8.50 -0.07 2.20 16 22 C -0.15 -2.05 5.56 -26.59 -0.15 -2.19 16 23 C 0.06 0.90 6.62 37.21 0.25 1.14 16 24 O -0.39 -5.91 10.41 -35.23 -0.37 -6.27 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.15 8.02 -51.93 -0.42 0.73 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.57 8.03 -51.92 -0.42 1.15 16 32 H 0.39 10.11 6.32 45.56 0.29 10.40 16 33 H 0.27 6.48 8.31 -40.82 -0.34 6.15 16 34 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 35 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.18 6.31 -51.93 -0.33 0.85 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.78 7.38 -51.93 -0.38 0.40 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -27.39 311.57 -7.22 -34.61 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.33 Total: 12.88 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.74 Total: 2.77 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.06 Total: -35.27 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.76 Total: -33.64 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.39 -7.22 -34.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321088243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.132 kcal (2) G-P(sol) polarization free energy of solvation -27.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds